Trpc3 (transient receptor potential cation channel subfamily C member 3) - Rat Genome Database

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Gene: Trpc3 (transient receptor potential cation channel subfamily C member 3) Ictidomys tridecemlineatus
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Symbol: Trpc3
Name: transient receptor potential cation channel subfamily C member 3
RGD ID: 12460360
Description: ENCODES a protein that exhibits calcium activated cation channel activity (ortholog); inositol 1,4,5 trisphosphate binding (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); positive regulation of calcium ion transport into cytosol (ortholog); positive regulation of cardiac muscle hypertrophy in response to stress (ortholog); ASSOCIATED WITH Albuminuria (ortholog); bipolar disorder (ortholog); cerebellar ataxia type 41 (ortholog); FOUND IN integral component of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: short transient receptor potential channel 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530165,875,569 - 65,989,487 (+)NCBI
SpeTri2.0NW_0049366621,130,555 - 1,171,352 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Trpc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530165,875,569 - 65,989,487 (+)NCBI
SpeTri2.0NW_0049366621,130,555 - 1,171,352 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4121,874,481 - 121,952,060 (-)EnsemblGRCh38hg38GRCh38
GRCh384121,874,481 - 121,952,060 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh374122,795,636 - 122,873,215 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364123,019,882 - 123,074,061 (-)NCBINCBI36hg18NCBI36
Build 344123,158,037 - 123,212,216NCBI
Celera4120,186,020 - 120,258,701 (-)NCBI
Cytogenetic Map4q27NCBI
HuRef4118,526,892 - 118,599,598 (-)NCBIHuRef
CHM1_14122,776,636 - 122,849,349 (-)NCBICHM1_1
Trpc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,674,631 - 36,744,577 (-)NCBIGRCm39mm39
GRCm39 Ensembl336,674,631 - 36,744,316 (-)Ensembl
GRCm38336,620,482 - 36,690,429 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,620,482 - 36,690,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,519,404 - 36,589,089 (-)NCBIGRCm37mm9NCBIm37
MGSCv36336,812,122 - 36,863,152 (-)NCBImm8
Celera336,505,427 - 36,575,273 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.93NCBI
Trpc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22119,481,313 - 119,619,333 (-)NCBI
Rnor_6.0 Ensembl2123,329,875 - 123,407,496 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02123,329,954 - 123,467,574 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02142,945,309 - 143,022,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,117,180 - 123,184,016 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12123,062,239 - 123,110,364 (-)NCBI
Celera2114,439,430 - 114,505,661 (-)NCBICelera
Cytogenetic Map2q25NCBI
Trpc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542818,628,890 - 18,678,906 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542818,628,951 - 18,678,525 (+)NCBIChiLan1.0ChiLan1.0
TRPC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14125,217,086 - 125,288,918 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4125,217,086 - 125,289,014 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04114,079,395 - 114,153,014 (-)NCBIMhudiblu_PPA_v0panPan3
TRPC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11918,207,565 - 18,272,551 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1918,207,417 - 18,271,828 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1918,424,474 - 18,489,427 (+)NCBI
ROS_Cfam_1.01918,325,131 - 18,390,132 (+)NCBI
UMICH_Zoey_3.11918,276,335 - 18,341,249 (+)NCBI
UNSW_CanFamBas_1.01918,557,985 - 18,622,931 (+)NCBI
UU_Cfam_GSD_1.01919,033,797 - 19,098,726 (+)NCBI
TRPC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8102,129,457 - 102,206,951 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18102,129,539 - 102,206,512 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28109,324,967 - 109,402,046 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,160,569 - 69,233,322 (-)NCBI
ChlSab1.1 Ensembl769,158,867 - 69,231,858 (-)Ensembl
Vero_WHO_p1.0NW_02366603748,122,249 - 48,196,700 (-)NCBI
Trpc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247772,154,887 - 2,232,476 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005336510   ⟹   XP_005336567
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530165,875,572 - 65,989,487 (+)NCBI
SpeTri2.0NW_0049366621,130,555 - 1,171,352 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040293348   ⟹   XP_040149282
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530165,941,626 - 65,989,487 (+)NCBI
RefSeq Acc Id: XM_040293349   ⟹   XP_040149283
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530165,875,569 - 65,989,487 (+)NCBI
RefSeq Acc Id: XR_005737399
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530165,875,570 - 65,988,641 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005336567 (Get FASTA)   NCBI Sequence Viewer  
  XP_040149282 (Get FASTA)   NCBI Sequence Viewer  
  XP_040149283 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3276244 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005336567   ⟸   XM_005336510
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040149283   ⟸   XM_040293349
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040149282   ⟸   XM_040293348
- Peptide Label: isoform X1
Protein Domains
ANK_REP_REGION


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014731 ENTREZGENE
Ensembl Protein ENSSTOP00000013198 ENTREZGENE
NCBI Gene Trpc3 ENTREZGENE