Mrpl52 (mitochondrial ribosomal protein L52) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Mrpl52 (mitochondrial ribosomal protein L52) Ictidomys tridecemlineatus
Analyze
Symbol: Mrpl52
Name: mitochondrial ribosomal protein L52
RGD ID: 12459464
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN mitochondrial translation (inferred); translation (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); lysinuric protein intolerance (ortholog); FOUND IN mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L52, mitochondrial; mitochondrial ribosomal protein L52, transcript variant X1; mitochondrial ribosomal protein L52, transcript variant X2; mitochondrial ribosomal protein L52, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864034,924,695 - 34,929,727 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,459,241 - 1,465,114 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,459,263 - 1,464,208 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mrpl52
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864034,924,695 - 34,929,727 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,459,241 - 1,465,114 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,459,263 - 1,464,208 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL52
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,829,887 - 22,835,037 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,829,879 - 22,835,037 (+)EnsemblGRCh38hg38GRCh38
GRCh371423,299,096 - 23,304,246 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,368,936 - 22,374,086 (+)NCBINCBI36Build 36hg18NCBI36
Celera143,161,975 - 3,167,132 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,416,305 - 3,421,426 (+)NCBIHuRef
CHM1_11423,297,766 - 23,302,922 (+)NCBICHM1_1
T2T-CHM13v2.01417,027,950 - 17,033,103 (+)NCBIT2T-CHM13v2.0
Mrpl52
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,664,366 - 54,667,207 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,664,366 - 54,667,213 (+)EnsemblGRCm39 Ensembl
GRCm381454,426,909 - 54,429,750 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,426,909 - 54,429,756 (+)EnsemblGRCm38mm10GRCm38
MGSCv371455,045,746 - 55,048,587 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,381,114 - 53,383,955 (+)NCBIMGSCv36mm8
Celera1452,218,914 - 52,221,792 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.78NCBI
Mrpl52
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81531,852,927 - 31,856,160 (+)NCBIGRCr8
mRatBN7.21527,882,777 - 27,886,131 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1527,882,829 - 27,886,799 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1529,722,182 - 29,725,407 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01530,869,399 - 30,872,624 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,119,762 - 29,122,985 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,069,479 - 33,072,777 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,069,382 - 33,072,777 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01536,955,364 - 36,958,618 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,488,908 - 32,491,857 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11532,497,380 - 32,507,284 (+)NCBI
Celera1527,465,973 - 27,469,197 (+)NCBICelera
Cytogenetic Map15p13NCBI
Mrpl52
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,452,998 - 37,456,770 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540937,452,998 - 37,457,014 (-)NCBIChiLan1.0ChiLan1.0
MRPL52
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,259,597 - 24,264,147 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,476,103 - 23,480,635 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,647,387 - 3,651,940 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11421,746,643 - 21,751,108 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1421,746,646 - 21,751,108 (+)Ensemblpanpan1.1panPan2
MRPL52
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,177,010 - 3,181,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,177,093 - 3,181,518 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,113,497 - 3,125,472 (+)NCBIDog10K_Boxer_Tasha
Dog10K_Boxer_Tasha83,125,605 - 3,130,089 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,272,386 - 3,289,341 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,284,885 - 3,289,333 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.182,964,218 - 2,980,813 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,026,006 - 3,042,591 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,287,980 - 3,304,559 (+)NCBIUU_Cfam_GSD_1.0
MRPL52
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl776,187,446 - 76,191,901 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1776,187,447 - 76,191,647 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2781,426,700 - 81,430,910 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL52
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,194,380 - 23,198,960 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605923,223,441 - 23,227,614 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl52
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,679,541 - 9,683,106 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,679,172 - 9,683,445 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000010313   ⟹   ENSSTOP00000009254
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367221,459,265 - 1,464,178 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000040564   ⟹   ENSSTOP00000030177
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367221,459,241 - 1,465,114 (-)Ensembl
RefSeq Acc Id: XM_005338791   ⟹   XP_005338848
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864034,924,709 - 34,929,727 (+)NCBI
SpeTri2.0NW_0049367221,459,263 - 1,464,208 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005338792   ⟹   XP_005338849
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864034,924,762 - 34,929,727 (+)NCBI
SpeTri2.0NW_0049367221,459,263 - 1,464,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005338793   ⟹   XP_005338850
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864034,924,709 - 34,929,727 (+)NCBI
SpeTri2.0NW_0049367221,459,263 - 1,464,208 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040276324   ⟹   XP_040132258
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864034,924,695 - 34,929,727 (+)NCBI
RefSeq Acc Id: XM_040276325   ⟹   XP_040132259
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864034,924,774 - 34,929,727 (+)NCBI
RefSeq Acc Id: XP_005338849   ⟸   XM_005338792
- Peptide Label: isoform X4
- UniProtKB: I3MF91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005338848   ⟸   XM_005338791
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005338850   ⟸   XM_005338793
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040132258   ⟸   XM_040276324
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040132259   ⟸   XM_040276325
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000030177   ⟸   ENSSTOT00000040564
RefSeq Acc Id: ENSSTOP00000009254   ⟸   ENSSTOT00000010313


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010317 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010313.3 UniProtKB/TrEMBL
  ENSSTOT00000040564.1 UniProtKB/TrEMBL
InterPro MRPL52 UniProtKB/TrEMBL
NCBI Gene Mrpl52 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L52, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR34090 UniProtKB/TrEMBL
Pfam MRPL52 UniProtKB/TrEMBL
UniProt A0A287D9D5_ICTTR UniProtKB/TrEMBL
  I3MF91 ENTREZGENE, UniProtKB/TrEMBL