Vps13c (vacuolar protein sorting 13 homolog C) - Rat Genome Database

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Gene: Vps13c (vacuolar protein sorting 13 homolog C) Ictidomys tridecemlineatus
Analyze
Symbol: Vps13c
Name: vacuolar protein sorting 13 homolog C
RGD ID: 12459205
Description: INVOLVED IN mitochondrion organization (ortholog); negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization (ortholog); response to insulin (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Bloom syndrome (ortholog); colon cancer (ortholog); FOUND IN cytosol (ortholog); dense core granule membrane (ortholog); mitochondrial outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: vacuolar protein sorting-associated protein 13C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640104,813,396 - 104,994,087 (-)NCBI
SpeTri2.0NW_00493647122,661,899 - 22,842,144 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Vps13c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640104,813,396 - 104,994,087 (-)NCBI
SpeTri2.0NW_00493647122,661,899 - 22,842,144 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS13C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1561,852,389 - 62,060,473 (-)EnsemblGRCh38hg38GRCh38
GRCh381561,852,389 - 62,060,447 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371562,144,588 - 62,352,646 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361559,931,880 - 60,139,939 (-)NCBINCBI36hg18NCBI36
Build 341559,931,879 - 60,139,939NCBI
Celera1539,034,037 - 39,241,888 (-)NCBI
Cytogenetic Map15q22.2NCBI
HuRef1538,966,908 - 39,175,239 (-)NCBIHuRef
CHM1_11562,264,112 - 62,472,186 (-)NCBICHM1_1
Vps13c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39967,747,594 - 67,905,026 (+)NCBIGRCm39mm39
GRCm39 Ensembl967,747,678 - 67,902,920 (+)Ensembl
GRCm38967,840,316 - 67,997,744 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl967,840,396 - 67,995,638 (+)EnsemblGRCm38mm10GRCm38
MGSCv37967,688,203 - 67,843,441 (+)NCBIGRCm37mm9NCBIm37
MGSCv36967,639,567 - 67,796,023 (+)NCBImm8
MGSCv36968,440,120 - 68,593,896 (+)NCBImm8
Celera965,070,042 - 65,224,890 (+)NCBICelera
Cytogenetic Map9CNCBI
Vps13c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2868,478,366 - 68,651,893 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl868,478,395 - 68,651,895 (+)Ensembl
Rnor_6.0873,682,814 - 73,843,290 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl873,682,887 - 73,842,928 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0878,012,179 - 78,174,887 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4872,196,264 - 72,365,531 (+)NCBIRGSC3.4rn4RGSC3.4
Celera873,070,323 - 73,229,973 (-)NCBICelera
Cytogenetic Map8q24NCBI
Vps13c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545013,016,950 - 13,174,990 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545013,016,933 - 13,178,797 (+)NCBIChiLan1.0ChiLan1.0
VPS13C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11559,116,946 - 59,319,705 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1559,119,001 - 59,319,619 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01540,819,512 - 41,020,644 (-)NCBIMhudiblu_PPA_v0panPan3
VPS13C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13026,600,181 - 26,776,347 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3026,601,513 - 26,776,763 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3026,516,146 - 26,692,465 (-)NCBI
ROS_Cfam_1.03026,777,160 - 26,946,615 (-)NCBI
UMICH_Zoey_3.13026,714,979 - 26,884,285 (-)NCBI
UNSW_CanFamBas_1.03026,773,728 - 26,944,232 (-)NCBI
UU_Cfam_GSD_1.03027,018,883 - 27,188,026 (-)NCBI
VPS13C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1109,931,264 - 110,104,241 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11109,931,269 - 110,105,519 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21121,361,178 - 121,530,405 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VPS13C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12621,463,393 - 21,647,944 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2621,463,657 - 21,648,603 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048119,739,546 - 119,924,207 (-)NCBIVero_WHO_p1.0
Vps13c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478110,259,971 - 10,414,421 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005316639   ⟹   XP_005316696
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640104,813,396 - 104,994,087 (-)NCBI
SpeTri2.0NW_00493647122,661,899 - 22,842,144 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005316641   ⟹   XP_005316698
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640104,829,003 - 104,994,081 (-)NCBI
SpeTri2.0NW_00493647122,677,066 - 22,842,144 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021727149   ⟹   XP_021582824
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640104,813,396 - 104,994,087 (-)NCBI
SpeTri2.0NW_00493647122,661,899 - 22,842,144 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021727159   ⟹   XP_021582834
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640104,825,584 - 104,994,081 (-)NCBI
SpeTri2.0NW_00493647122,676,304 - 22,842,144 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275775   ⟹   XP_040131709
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640104,813,396 - 104,994,081 (-)NCBI
RefSeq Acc Id: XM_040275776   ⟹   XP_040131710
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640104,813,396 - 104,982,387 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005316696   ⟸   XM_005316639
- Peptide Label: isoform X3
- UniProtKB: A0A287D1V1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005316698   ⟸   XM_005316641
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_021582824   ⟸   XM_021727149
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021582834   ⟸   XM_021727159
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_040131709   ⟸   XM_040275775
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040131710   ⟸   XM_040275776
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003166 ENTREZGENE
Ensembl Protein ENSSTOP00000002920 ENTREZGENE
  ENSSTOP00000026169 ENTREZGENE
  ENSSTOP00000027533 ENTREZGENE
NCBI Gene Vps13c ENTREZGENE
UniProt A0A287D1V1 ENTREZGENE