Ccna2 (cyclin A2) - Rat Genome Database

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Gene: Ccna2 (cyclin A2) Ictidomys tridecemlineatus
Analyze
Symbol: Ccna2
Name: cyclin A2
RGD ID: 12459028
Description: ENCODES a protein that exhibits cyclin-dependent protein serine/threonine kinase regulator activity (inferred); protein domain specific binding (inferred); protein kinase binding (inferred); INVOLVED IN animal organ regeneration (ortholog); cellular response to cocaine (ortholog); cellular response to estradiol stimulus (ortholog); PARTICIPATES IN G1/S transition pathway; p53 signaling pathway; ASSOCIATED WITH Carotid Artery Injuries (ortholog); congestive heart failure (ortholog); COVID-19 (ortholog); FOUND IN cyclin A2-CDK2 complex (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cyclin-A2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530166,040,643 - 66,046,184 (+)NCBI
SpeTri2.0NW_0049366621,073,460 - 1,079,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Ccna2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530166,040,643 - 66,046,184 (+)NCBI
SpeTri2.0NW_0049366621,073,460 - 1,079,136 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4121,816,444 - 121,823,883 (-)EnsemblGRCh38hg38GRCh38
GRCh384121,816,444 - 121,823,883 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh374122,737,599 - 122,745,038 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364122,957,975 - 122,964,342 (-)NCBINCBI36hg18NCBI36
Build 344123,096,129 - 123,102,485NCBI
Celera4120,123,415 - 120,130,904 (-)NCBI
Cytogenetic Map4q27NCBI
HuRef4118,464,283 - 118,471,772 (-)NCBIHuRef
CHM1_14122,714,067 - 122,721,556 (-)NCBICHM1_1
Ccna2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39336,619,014 - 36,627,187 (-)NCBIGRCm39mm39
GRCm39 Ensembl336,619,014 - 36,626,299 (-)Ensembl
GRCm38336,564,865 - 36,573,038 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl336,564,865 - 36,572,150 (-)EnsemblGRCm38mm10GRCm38
MGSCv37336,463,787 - 36,470,918 (-)NCBIGRCm37mm9NCBIm37
MGSCv36336,756,414 - 36,763,490 (-)NCBImm8
Celera336,449,044 - 36,457,213 (-)NCBICelera
Cytogenetic Map3BNCBI
cM Map317.67NCBI
Ccna2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22119,427,239 - 119,433,645 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2119,426,089 - 119,433,577 (-)Ensembl
Rnor_6.02123,274,727 - 123,282,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2123,275,881 - 123,282,214 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02142,890,984 - 142,897,322 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,062,752 - 123,069,085 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12123,009,712 - 123,013,946 (-)NCBI
Celera2114,385,123 - 114,391,456 (-)NCBICelera
Cytogenetic Map2q25NCBI
Ccna2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542818,726,062 - 18,732,211 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542818,725,969 - 18,732,478 (+)NCBIChiLan1.0ChiLan1.0
CCNA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14125,153,810 - 125,161,370 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4125,153,810 - 125,161,302 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04114,016,917 - 114,024,816 (-)NCBIMhudiblu_PPA_v0panPan3
CCNA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11918,317,866 - 18,324,592 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1918,318,004 - 18,323,691 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1918,534,627 - 18,544,698 (+)NCBI
ROS_Cfam_1.01918,436,112 - 18,446,091 (+)NCBI
ROS_Cfam_1.0 Ensembl1918,436,169 - 18,442,776 (+)Ensembl
UMICH_Zoey_3.11918,387,227 - 18,397,254 (+)NCBI
UNSW_CanFamBas_1.01918,668,909 - 18,678,936 (+)NCBI
UU_Cfam_GSD_1.01919,144,640 - 19,154,711 (+)NCBI
CCNA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.18102,260,346 - 102,266,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28109,455,845 - 109,461,772 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,092,410 - 69,100,191 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl769,093,543 - 69,099,497 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603748,053,566 - 48,060,924 (-)NCBIVero_WHO_p1.0
Ccna2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247772,097,002 - 2,104,244 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013363435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013363435   ⟹   XP_013218889
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530166,040,643 - 66,046,184 (+)NCBI
SpeTri2.0NW_0049366621,073,460 - 1,079,136 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013218889 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3276247 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013218889   ⟸   XM_013363435
- UniProtKB: I3MAU6 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Cyclin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008011 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000007167 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008007 UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-A_N UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
NCBI Gene Ccna2 ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
  Cyclin_N2 UniProtKB/TrEMBL
PIRSF Cyclin_A_B_D_E UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt I3MAU6 ENTREZGENE, UniProtKB/TrEMBL