Bco2 (beta-carotene oxygenase 2) - Rat Genome Database

Name: Bco2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Bco2 (beta-carotene oxygenase 2) Ictidomys tridecemlineatus

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Symbol:

Bco2

Name:

beta-carotene oxygenase 2

RGD ID:

12458146

Description:

ENCODES a protein that exhibits beta,beta-carotene-9',10'-cleaving oxygenase activity (inferred); beta-carotene 15,15'-dioxygenase activity (inferred); carotenoid dioxygenase activity (inferred); INVOLVED IN retinal metabolic process (ortholog); xanthophyll metabolic process (ortholog); ASSOCIATED WITH BH4-deficient hyperphenylalaninemia A (ortholog); chromosome 11 partial duplication syndrome (ortholog); hepatocellular carcinoma (ortholog); FOUND IN mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

beta,beta-carotene 9',10'-oxygenase; beta-carotene oxygenase 2, transcript variant X1; beta-carotene oxygenase 2, transcript variant X2; beta-carotene oxygenase 2, transcript variant X3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	94,411,396 - 94,443,419 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936612	2,262,066 - 2,294,255 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936612	2,262,115 - 2,294,287 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

BH4-deficient hyperphenylalaninemia A (ISO)

chromosome 11 partial duplication syndrome (ISO)

hepatocellular carcinoma (ISO)

intellectual disability (ISO)

Pyruvate Dehydrogenase E2 Deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carotene catabolic process (IEA)

carotene metabolic process (IEA)

carotenoid metabolic process (IEA)

lipid metabolic process (IEA)

regulation of mitochondrial membrane potential (IEA)

regulation of reactive oxygen species metabolic process (IEA)

retinal metabolic process (IEA,ISO)

xanthophyll catabolic process (IEA)

xanthophyll metabolic process (IEA,ISO)

Cellular Component

mitochondrion (IEA)

Molecular Function

beta,beta-carotene-9',10'-cleaving oxygenase activity (IEA)

beta-carotene 15,15'-dioxygenase activity (IEA)

carotenoid dioxygenase activity (IEA)

dioxygenase activity (IEA)

metal ion binding (IEA)

oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Bco2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	94,411,396 - 94,443,419 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936612	2,262,066 - 2,294,255 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936612	2,262,115 - 2,294,287 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BCO2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	112,175,512 - 112,218,946 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	112,175,510 - 112,224,699 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	112,046,235 - 112,089,669 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	111,551,418 - 111,594,862 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	111,551,567 - 111,594,072	NCBI
Celera	11	109,199,441 - 109,242,886 (+)	NCBI		Celera
Cytogenetic Map	11	q23.1	NCBI
HuRef	11	107,970,380 - 108,015,210 (+)	NCBI		HuRef
CHM1_1	11	111,929,662 - 111,973,106 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	112,185,841 - 112,229,285 (+)	NCBI		T2T-CHM13v2.0

Bco2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	50,444,387 - 50,466,513 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	50,444,387 - 50,466,481 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	50,533,087 - 50,555,214 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	50,533,087 - 50,555,181 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	50,341,192 - 50,363,243 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	50,285,381 - 50,302,932 (-)	NCBI		MGSCv36	mm8
Celera	9	47,822,891 - 47,850,079 (-)	NCBI		Celera
Cytogenetic Map	9	A5.3	NCBI
cM Map	9	27.74	NCBI

Bco2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	59,778,571 - 59,803,597 (-)	NCBI		GRCr8
mRatBN7.2	8	50,882,174 - 50,907,676 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	50,882,181 - 50,915,467 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	56,387,689 - 56,412,994 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	54,666,588 - 54,691,892 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	52,530,858 - 52,556,168 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	54,965,577 - 54,990,604 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	54,965,583 - 54,998,864 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	53,562,900 - 53,587,926 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	53,892,017 - 53,917,522 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	53,911,481 - 53,932,108 (-)	NCBI
Celera	8	50,430,781 - 50,455,782 (-)	NCBI		Celera
Cytogenetic Map	8	q23	NCBI

Bco2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	13,837,782 - 13,872,886 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	13,838,260 - 13,872,886 (+)	NCBI	ChiLan1.0	ChiLan1.0

BCO2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	112,920,417 - 112,971,307 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	114,015,150 - 114,065,619 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	107,056,525 - 107,105,358 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	110,899,703 - 110,942,556 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	110,899,703 - 110,942,547 (+)	Ensembl	panpan1.1		panPan2

BCO2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	20,914,658 - 20,969,847 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	20,915,647 - 20,964,177 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	20,838,144 - 20,892,509 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	20,937,599 - 20,992,072 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	20,919,161 - 20,987,893 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	21,000,542 - 21,054,904 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	20,900,812 - 20,955,168 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	20,948,956 - 20,998,527 (-)	NCBI		UU_Cfam_GSD_1.0

BCO2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	39,872,645 - 39,917,263 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	39,864,136 - 39,916,491 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	44,716,295 - 44,767,961 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103248467
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	103,511,730 - 103,566,526 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	103,521,658 - 103,565,659 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	22,419,766 - 22,475,321 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bco2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	7,334,472 - 7,353,802 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624784	7,324,312 - 7,353,733 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005334216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005334218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021732395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040285207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000011700 ⟹ ENSSTOP00000010498

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936612	2,262,066 - 2,294,255 (-)	Ensembl

RefSeq Acc Id:

XM_005334216 ⟹ XP_005334273

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	94,411,436 - 94,443,419 (+)	NCBI
SpeTri2.0	NW_004936612	2,262,115 - 2,294,126 (-)	NCBI

Sequence:

show sequence

ATGTGTTTTCAAATCTTTCTCCATTTTGTCAGGAATCGTTCTACCACTGCAGTAGGTTTTCTTT
CTGTGGCAGTGTACCGGCTCCCAGTTTTGAAGACATACATGGAAAATACTCATCAGAAAAAAAC
CCTCTTGGGGCAGCGGCAGAATCTGCCATGTATTGCACCACTGCTGACCACGGTGGAGGAGACT
GTGCAGAACATCTCTGCTCAAGTCAAGGGACACATTCCTGAGTGGCTCCATGGCTATCTACTTC
GAGTTGGACCTGGAAAATTCGAATTTGGGAAGGATAAGTACAGTCACTGGTTTGATGGAATGGC
TTTGCTTCATCAGTTCAGGATGGAGAAAGGCACAGTGACATATAGGAGCAAGTTTCTACAGAGT
GACACATATAAGACCAACAGTGTTGGAAATCGAATTGTGATCTCAGAATTTGGCACACTGGCTT
TTCCTGATCCATGCAAAAATATTTTTGAACGTTTCTTGTCAAAGTTTGAACAGCCTGCCATGAC
AGACAATACCAATGTCAACTATGTGCAGTACAAAGGTGATTACTACATGAGCACTGAGACCAAT
TTTATGAATAAAGTGGACATTGAAACTCTGGAGAAAATAGAAAAGGTGGATTGGAGCAAATTTA
TTGCTGTAAATGGAGCAACTGCACATCCTCATTATGATCCAGATGGAACAGCATACAATATGGG
GAACTCCTATGGACCACAAGGTTCCTGCTATAATATTATTCGGGTTCCTCCAGAGAAGGTGGAC
CTTGGGGAAACAATACATGGAGCCCAGGTGATATGTTCTATTTCTTCTGAAGAGAAAATGAAAC
CTTCTTACTACCACAGCTTTGGAATGACAAAGAACTATATAATCTTCATTGAACAGCCTCTAAA
GATGAACCTGTGGAAATTTGTCACTTCTAAAATTCGAGGAAAGGCCTTTTCAGATGGGATAAGC
TGGGAACCTCAGTATAATACCCGATTTTATGTGGTGGATAAACACACTGGACAGCTTCTTCCAG
GGATGTACTACAGCAAACCTTTTATTACTTTTCATCAAATCAATGCCTTTGAGGATGAGGGCTG
TATTATAATTGATATGTGCTGTCAAGATAATGGAAGAAACCTAGATATTTACCAACTACAGAAT
CTCAGGAAATCTGGGGAAGGGCTCGATCAGGTCTATAATTCGGCAGCCCTATCTTTCCCTCGAA
GGTTTGTGTTGCCCTTACATATCAGTGAGAATGACCCTGCAGGAGAGAACCTCAGTCCATTGTC
CTATTCTTCAGCCAGTGCTGTGAAACAGAGTGATGGGAAGATCTGGTGCTCTCATGAAAATCTA
CATTATGAGGACCTAGAGGAAGAAGGAGGCATTGAATTTCCTCAGATCAACTATGGCCAGTTCA
GTGGCAAAAAATATAATTTCTTCTATGGCTGTGGCTTTCGGCATTTGGTGGGGGATTCTCTGAT
GAAGGTTGATGTGATAAACAAGTCACTGAAGTTTTGGAGAGAAGATGGCTTTTATCCCTCAGAA
CCTATTTTTGTTCCAGTACCAGGAGCTAAAGAAGAAGATGATGGAATTATTCTTTCTGTGGTGA
TCACTCCCAAGCAGAATGAAAACAATTTTCTCCTTGTCTTGGATGCCAGGAACTTTGAAGAACT
AGGCCGAGCAGAGGTACCTGTGCAAATGCCTTATGGGTTCCACGGCACATTTGTACCTATCTGA
TGGGATAACTTCAAGGTCTGGGAACTAGATTTAAAGTGAGTGTACTCTGTGGAAAAGAGAGAAG
AAGGCATCTTACTTCCCAAACCACAGGCATTTGGTTTTAAGTCCTATTAAAAACAGAATTTGTA
AGAAAATTATGGTTTTATATTTTCTTAGGGATTGTCCTTGAAATCATTAAGCAAGGGTAATATA
GCCTTTTGAGAAGAGTT

hide sequence

RefSeq Acc Id:

XM_005334218 ⟹ XP_005334275

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	94,411,396 - 94,443,419 (+)	NCBI
SpeTri2.0	NW_004936612	2,262,324 - 2,294,287 (-)	NCBI

Sequence:

show sequence

TCACTGAGCCAGGGACAACCCTGGAGAGTCAGGGACAACCCAGGAAGTTCTGTGAGCGTTTATT
GTTTAGCGTTTATTGTTTAGCGTTTCTTCCAACTGTGACTGCCGTTTTGAAGACATACATGGAA
AATACTCATCAGAAAAAAACCCTCTTGGGGCAGCGGCAGAATCTGCCATGTATTGCACCACTGC
TGACCACGGTGGAGGAGACTGTGCAGAACATCTCTGCTCAAGTCAAGGGACACATTCCTGAGTG
GCTCCATGGCTATCTACTTCGAGTTGGACCTGGAAAATTCGAATTTGGGAAGGATAAGTACAGT
CACTGGTTTGATGGAATGGCTTTGCTTCATCAGTTCAGGATGGAGAAAGGCACAGTGACATATA
GGAGCAAGTTTCTACAGAGTGACACATATAAGACCAACAGTGTTGGAAATCGAATTGTGATCTC
AGAATTTGGCACACTGGCTTTTCCTGATCCATGCAAAAATATTTTTGAACGTTTCTTGTCAAAG
TTTGAACAGCCTGCCATGACAGACAATACCAATGTCAACTATGTGCAGTACAAAGGTGATTACT
ACATGAGCACTGAGACCAATTTTATGAATAAAGTGGACATTGAAACTCTGGAGAAAATAGAAAA
GGTGGATTGGAGCAAATTTATTGCTGTAAATGGAGCAACTGCACATCCTCATTATGATCCAGAT
GGAACAGCATACAATATGGGGAACTCCTATGGACCACAAGGTTCCTGCTATAATATTATTCGGG
TTCCTCCAGAGAAGGTGGACCTTGGGGAAACAATACATGGAGCCCAGGTGATATGTTCTATTTC
TTCTGAAGAGAAAATGAAACCTTCTTACTACCACAGCTTTGGAATGACAAAGAACTATATAATC
TTCATTGAACAGCCTCTAAAGATGAACCTGTGGAAATTTGTCACTTCTAAAATTCGAGGAAAGG
CCTTTTCAGATGGGATAAGCTGGGAACCTCAGTATAATACCCGATTTTATGTGGTGGATAAACA
CACTGGACAGCTTCTTCCAGGGATGTACTACAGCAAACCTTTTATTACTTTTCATCAAATCAAT
GCCTTTGAGGATGAGGGCTGTATTATAATTGATATGTGCTGTCAAGATAATGGAAGAAACCTAG
ATATTTACCAACTACAGAATCTCAGGAAATCTGGGGAAGGGCTCGATCAGGTCTATAATTCGGC
AGCCCTATCTTTCCCTCGAAGGTTTGTGTTGCCCTTACATATCAGTGAGAATGACCCTGCAGGA
GAGAACCTCAGTCCATTGTCCTATTCTTCAGCCAGTGCTGTGAAACAGAGTGATGGGAAGATCT
GGTGCTCTCATGAAAATCTACATTATGAGGACCTAGAGGAAGAAGGAGGCATTGAATTTCCTCA
GATCAACTATGGCCAGTTCAGTGGCAAAAAATATAATTTCTTCTATGGCTGTGGCTTTCGGCAT
TTGGTGGGGGATTCTCTGATGAAGGTTGATGTGATAAACAAGTCACTGAAGTTTTGGAGAGAAG
ATGGCTTTTATCCCTCAGAACCTATTTTTGTTCCAGTACCAGGAGCTAAAGAAGAAGATGATGG
AATTATTCTTTCTGTGGTGATCACTCCCAAGCAGAATGAAAACAATTTTCTCCTTGTCTTGGAT
GCCAGGAACTTTGAAGAACTAGGCCGAGCAGAGGTACCTGTGCAAATGCCTTATGGGTTCCACG
GCACATTTGTACCTATCTGA

hide sequence

RefSeq Acc Id:

XM_021732395 ⟹ XP_021588070

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	94,411,436 - 94,443,419 (+)	NCBI
SpeTri2.0	NW_004936612	2,262,361 - 2,294,287 (-)	NCBI

Sequence:

show sequence

TCACTGAGCCAGGGACAACCCTGGAGAGTCAGGGACAACCCAGGAAGTTCTGTGAGCGTTTATT
GTTTAGCGTTTATTGTTTAGCGTTTCTTCCAACTGTGACTGCCGGTGAGTGTAAGCATTTGAAA
TCACAGGATCTGCAGCTACTGAACAAATTAAAAATGTGTTTTCAAATCTTTCTCCATTTTGTCA
GGAATCGTTCTACCACTGCAGTAGGTTTTCTTTCTGTGGCAGTGTACCGGCTCCCAGTTTTGAA
GACATACATGGAAAATACTCATCAGAAAAAAACCCTCTTGGGGCAGCGGCAGAATCTGCCATGT
ATTGCACCACTGCTGACCACGGTGGAGGAGACTGTGCAGAACATCTCTGCTCAAGTCAAGGGAC
ACATTCCTGAGTGGCTCCATGGCTATCTACTTCGAGTTGGACCTGGAAAATTCGAATTTGGGAA
GGATAAGTACAGTCACTGGTTTGATGGAATGGCTTTGCTTCATCAGTTCAGGATGGAGAAAGGC
ACAGTGACATATAGGAGCAAGTTTCTACAGAGTGACACATATAAGACCAACAGTGTTGGAAATC
GAATTGTGATCTCAGAATTTGGCACACTGGCTTTTCCTGATCCATGCAAAAATATTTTTGAACG
TTTCTTGTCAAAGTTTGAACAGCCTGCCATGACAGACAATACCAATGTCAACTATGTGCAGTAC
AAAGGTGATTACTACATGAGCACTGAGACCAATTTTATGAATAAAGTGGACATTGAAACTCTGG
AGAAAATAGAAAAGGTGGATTGGAGCAAATTTATTGCTGTAAATGGAGCAACTGCACATCCTCA
TTATGATCCAGATGGAACAGCATACAATATGGGGAACTCCTATGGACCACAAGGTTCCTGCTAT
AATATTATTCGGGTTCCTCCAGAGAAGGTGGACCTTGGGGAAACAATACATGGAGCCCAGGTGA
TATGTTCTATTTCTTCTGAAGAGAAAATGAAACCTTCTTACTACCACAGCTTTGGAATGACAAA
GAACTATATAATCTTCATTGAACAGCCTCTAAAGATGAACCTGTGGAAATTTGTCACTTCTAAA
ATTCGAGGAAAGGCCTTTTCAGATGGGATAAGCTGGGAACCTCAGTATAATACCCGATTTTATG
TGGTGGATAAACACACTGGACAGCTTCTTCCAGGGATGTACTACAGCAAACCTTTTATTACTTT
TCATCAAATCAATGCCTTTGAGGATGAGGGCTGTATTATAATTGATATGTGCTGTCAAGATAAT
GGAAGAAACCTAGATATTTACCAACTACAGAATCTCAGGAAATCTGGGGAAGGGCTCGATCAGG
TCTATAATTCGGCAGCCCTATCTTTCCCTCGAAGGTTTGTGTTGCCCTTACATATCAGTGAGAA
TGACCCTGCAGGAGAGAACCTCAGTCCATTGTCCTATTCTTCAGCCAGTGCTGTGAAACAGAGT
GATGGGAAGATCTGGTGCTCTCATGAAAATCTACATTATGAGGACCTAGAGGAAGAAGGAGGCA
TTGAATTTCCTCAGATCAACTATGGCCAGTTCAGTGGCAAAAAATATAATTTCTTCTATGGCTG
TGGCTTTCGGCATTTGGTGGGGGATTCTCTGATGAAGGTTGATGTGATAAACAAGTCACTGAAG
TACCAGGAGCTAAAGAAGAAGATGATGGAATTATTCTTTCTGTGGTGATCACTCCCAAGCAGAA
TGAAAACAATTTTCTCCTTGTCTTGGATGCCAGGAACTTTGAAGAACTAGGCCGAGCAGAGGTA
CCTGTGCAAAT

hide sequence

RefSeq Acc Id:

XM_040285205 ⟹ XP_040141139

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	94,411,396 - 94,443,419 (+)	NCBI

RefSeq Acc Id:

XM_040285206 ⟹ XP_040141140

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	94,411,436 - 94,443,419 (+)	NCBI

RefSeq Acc Id:

XM_040285207 ⟹ XP_040141141

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	94,411,436 - 94,443,419 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005334273	(Get FASTA)	NCBI Sequence Viewer
	XP_005334275	(Get FASTA)	NCBI Sequence Viewer
	XP_021588070	(Get FASTA)	NCBI Sequence Viewer
	XP_040141139	(Get FASTA)	NCBI Sequence Viewer
	XP_040141140	(Get FASTA)	NCBI Sequence Viewer
	XP_040141141	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000010498.3
GenBank Protein	KAG3286541	(Get FASTA)	NCBI Sequence Viewer
	KAG3286542	(Get FASTA)	NCBI Sequence Viewer
	KAG3286543	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005334275 ⟸ XM_005334218

- Peptide Label:

isoform X2

- Sequence:

show sequence

MENTHQKKTLLGQRQNLPCIAPLLTTVEETVQNISAQVKGHIPEWLHGYLLRVGPGKFEFGKDK
YSHWFDGMALLHQFRMEKGTVTYRSKFLQSDTYKTNSVGNRIVISEFGTLAFPDPCKNIFERFL
SKFEQPAMTDNTNVNYVQYKGDYYMSTETNFMNKVDIETLEKIEKVDWSKFIAVNGATAHPHYD
PDGTAYNMGNSYGPQGSCYNIIRVPPEKVDLGETIHGAQVICSISSEEKMKPSYYHSFGMTKNY
IIFIEQPLKMNLWKFVTSKIRGKAFSDGISWEPQYNTRFYVVDKHTGQLLPGMYYSKPFITFHQ
INAFEDEGCIIIDMCCQDNGRNLDIYQLQNLRKSGEGLDQVYNSAALSFPRRFVLPLHISENDP
AGENLSPLSYSSASAVKQSDGKIWCSHENLHYEDLEEEGGIEFPQINYGQFSGKKYNFFYGCGF
RHLVGDSLMKVDVINKSLKFWREDGFYPSEPIFVPVPGAKEEDDGIILSVVITPKQNENNFLLV
LDARNFEELGRAEVPVQMPYGFHGTFVPI

hide sequence

RefSeq Acc Id:	XP_005334273 ⟸ XM_005334216
- Peptide Label:	isoform X1
- UniProtKB:	I3MHU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCFQIFLHFVRNRSTTAVGFLSVAVYRLPVLKTYMENTHQKKTLLGQRQNLPCIAPLLTTVEET VQNISAQVKGHIPEWLHGYLLRVGPGKFEFGKDKYSHWFDGMALLHQFRMEKGTVTYRSKFLQS DTYKTNSVGNRIVISEFGTLAFPDPCKNIFERFLSKFEQPAMTDNTNVNYVQYKGDYYMSTETN FMNKVDIETLEKIEKVDWSKFIAVNGATAHPHYDPDGTAYNMGNSYGPQGSCYNIIRVPPEKVD LGETIHGAQVICSISSEEKMKPSYYHSFGMTKNYIIFIEQPLKMNLWKFVTSKIRGKAFSDGIS WEPQYNTRFYVVDKHTGQLLPGMYYSKPFITFHQINAFEDEGCIIIDMCCQDNGRNLDIYQLQN LRKSGEGLDQVYNSAALSFPRRFVLPLHISENDPAGENLSPLSYSSASAVKQSDGKIWCSHENL HYEDLEEEGGIEFPQINYGQFSGKKYNFFYGCGFRHLVGDSLMKVDVINKSLKFWREDGFYPSE PIFVPVPGAKEEDDGIILSVVITPKQNENNFLLVLDARNFEELGRAEVPVQMPYGFHGTFVPI hide sequence

RefSeq Acc Id:

XP_021588070 ⟸ XM_021732395

- Peptide Label:

isoform X4

- Sequence:

show sequence

MCFQIFLHFVRNRSTTAVGFLSVAVYRLPVLKTYMENTHQKKTLLGQRQNLPCIAPLLTTVEET
VQNISAQVKGHIPEWLHGYLLRVGPGKFEFGKDKYSHWFDGMALLHQFRMEKGTVTYRSKFLQS
DTYKTNSVGNRIVISEFGTLAFPDPCKNIFERFLSKFEQPAMTDNTNVNYVQYKGDYYMSTETN
FMNKVDIETLEKIEKVDWSKFIAVNGATAHPHYDPDGTAYNMGNSYGPQGSCYNIIRVPPEKVD
LGETIHGAQVICSISSEEKMKPSYYHSFGMTKNYIIFIEQPLKMNLWKFVTSKIRGKAFSDGIS
WEPQYNTRFYVVDKHTGQLLPGMYYSKPFITFHQINAFEDEGCIIIDMCCQDNGRNLDIYQLQN
LRKSGEGLDQVYNSAALSFPRRFVLPLHISENDPAGENLSPLSYSSASAVKQSDGKIWCSHENL
HYEDLEEEGGIEFPQINYGQFSGKKYNFFYGCGFRHLVGDSLMKVDVINKSLKYQELKKKMMEL
FFLW

hide sequence

RefSeq Acc Id:	XP_040141139 ⟸ XM_040285205
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040141140 ⟸ XM_040285206
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040141141 ⟸ XM_040285207
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSSTOP00000010498 ⟸ ENSSTOT00000011700

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000011700	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000011700.3	UniProtKB/TrEMBL
InterPro	Carotenoid_Oase	UniProtKB/TrEMBL
NCBI Gene	Bco2	ENTREZGENE
PANTHER	BETA,BETA-CAROTENE 9',10'-OXYGENASE	UniProtKB/TrEMBL
	PTHR10543	UniProtKB/TrEMBL
Pfam	RPE65	UniProtKB/TrEMBL
UniProt	I3MHU7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD