Rcbtb1 (RCC1 and BTB domain containing protein 1) - Rat Genome Database

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Gene: Rcbtb1 (RCC1 and BTB domain containing protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Rcbtb1
Name: RCC1 and BTB domain containing protein 1
RGD ID: 12458026
Description: ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); Coats disease (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RCC1 and BTB domain containing protein 1, transcript variant X1; RCC1 and BTB domain containing protein 1, transcript variant X2; RCC1 and BTB domain containing protein 1, transcript variant X3; RCC1 and BTB domain containing protein 1, transcript variant X4; RCC1 and BTB domain containing protein 1, transcript variant X5; RCC1 and BTB domain containing protein 1, transcript variant X6; RCC1 and BTB domain containing protein 1, transcript variant X7; RCC1 and BTB domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945159,124,744 - 159,165,954 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365652,608,792 - 2,650,604 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365652,608,788 - 2,649,992 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Rcbtb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945159,124,744 - 159,165,954 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365652,608,792 - 2,650,604 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365652,608,788 - 2,649,992 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCBTB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381349,531,946 - 49,585,558 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1349,531,946 - 49,585,558 (-)EnsemblGRCh38hg38GRCh38
GRCh371350,106,082 - 50,159,694 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361349,004,083 - 49,057,720 (-)NCBINCBI36Build 36hg18NCBI36
Build 341349,004,082 - 49,057,720NCBI
Celera1331,161,034 - 31,214,651 (-)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1330,899,391 - 30,952,987 (-)NCBIHuRef
CHM1_11350,073,621 - 50,127,254 (-)NCBICHM1_1
T2T-CHM13v2.01348,750,484 - 48,804,060 (-)NCBIT2T-CHM13v2.0
Rcbtb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391459,438,471 - 59,474,716 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1459,438,658 - 59,474,714 (+)EnsemblGRCm39 Ensembl
GRCm381459,201,018 - 59,237,267 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1459,201,209 - 59,237,265 (+)EnsemblGRCm38mm10GRCm38
MGSCv371459,820,065 - 59,856,102 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361458,155,352 - 58,191,375 (+)NCBIMGSCv36mm8
Celera1457,005,111 - 57,041,136 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1431.47NCBI
Rcbtb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81537,430,453 - 37,477,920 (+)NCBIGRCr8
mRatBN7.21533,319,586 - 33,362,421 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1533,319,586 - 33,365,302 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1535,310,617 - 35,354,224 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01536,461,276 - 36,504,898 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01534,719,682 - 34,762,068 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01539,622,572 - 39,665,335 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1539,638,510 - 39,669,473 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01543,439,885 - 43,483,414 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41538,291,075 - 38,371,308 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11538,306,774 - 38,385,804 (+)NCBI
Celera1533,014,669 - 33,057,028 (+)NCBICelera
Cytogenetic Map15p12NCBI
Rcbtb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,976,283 - 3,080,405 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554312,976,283 - 3,080,665 (-)NCBIChiLan1.0ChiLan1.0
RCBTB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21450,972,898 - 51,028,372 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11349,624,567 - 49,678,910 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01330,673,230 - 30,727,480 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11349,422,283 - 49,475,551 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1349,422,283 - 49,475,857 (-)Ensemblpanpan1.1panPan2
RCBTB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,183,089 - 2,230,748 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,198,185 - 2,229,485 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha222,211,982 - 2,260,039 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0222,173,787 - 2,222,203 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,173,776 - 2,222,202 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,082,595 - 2,130,648 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,131,900 - 2,179,940 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,150,250 - 2,198,317 (+)NCBIUU_Cfam_GSD_1.0
RCBTB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,114,767 - 18,197,747 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,132,013 - 18,197,759 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,446,178 - 18,512,529 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RCBTB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1327,451,687 - 27,505,866 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl327,451,182 - 27,506,013 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605716,378,639 - 16,432,914 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rcbtb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247485,097,982 - 5,147,011 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247485,097,274 - 5,147,014 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000029132   ⟹   ENSSTOP00000023770
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365652,610,866 - 2,650,604 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000037288   ⟹   ENSSTOP00000026620
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365652,608,792 - 2,650,604 (-)Ensembl
RefSeq Acc Id: XM_005330208   ⟹   XP_005330265
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945159,124,744 - 159,165,952 (-)NCBI
SpeTri2.0NW_0049365652,608,788 - 2,649,990 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021729764   ⟹   XP_021585439
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945159,124,744 - 159,165,953 (-)NCBI
SpeTri2.0NW_0049365652,608,788 - 2,649,990 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021729765   ⟹   XP_021585440
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945159,124,744 - 159,165,781 (-)NCBI
SpeTri2.0NW_0049365652,608,788 - 2,649,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021729766   ⟹   XP_021585441
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945159,124,744 - 159,165,953 (-)NCBI
SpeTri2.0NW_0049365652,608,788 - 2,649,991 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021729767   ⟹   XP_021585442
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945159,129,135 - 159,165,954 (-)NCBI
SpeTri2.0NW_0049365652,613,508 - 2,649,992 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040281545   ⟹   XP_040137479
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945159,124,744 - 159,165,952 (-)NCBI
RefSeq Acc Id: XM_040281546   ⟹   XP_040137480
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945159,124,744 - 159,165,781 (-)NCBI
RefSeq Acc Id: XM_040281547   ⟹   XP_040137481
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945159,124,744 - 159,165,954 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005330265   ⟸   XM_005330208
- Peptide Label: isoform X1
- UniProtKB: I3NHC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021585441   ⟸   XM_021729766
- Peptide Label: isoform X1
- UniProtKB: I3NHC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021585439   ⟸   XM_021729764
- Peptide Label: isoform X1
- UniProtKB: I3NHC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021585440   ⟸   XM_021729765
- Peptide Label: isoform X1
- UniProtKB: I3NHC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021585442   ⟸   XM_021729767
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040137481   ⟸   XM_040281547
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040137479   ⟸   XM_040281545
- Peptide Label: isoform X1
- UniProtKB: I3NHC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040137480   ⟸   XM_040281546
- Peptide Label: isoform X1
- UniProtKB: I3NHC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000026620   ⟸   ENSSTOT00000037288
RefSeq Acc Id: ENSSTOP00000023770   ⟸   ENSSTOT00000029132
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028110 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029132.2 UniProtKB/TrEMBL
  ENSSTOT00000037288.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.30 UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  RCBTB1_BTB_POZ UniProtKB/TrEMBL
  RCC1/BLIP-II UniProtKB/TrEMBL
  Reg_chr_condens UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene Rcbtb1 ENTREZGENE
PANTHER BTB_POZ DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  BTK-BINDING PROTEIN-RELATED UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  RCC1 UniProtKB/TrEMBL
PRINTS RCCNDNSATION UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  RCC1_2 UniProtKB/TrEMBL
  RCC1_3 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF50985 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
UniProt I3NHC3 ENTREZGENE, UniProtKB/TrEMBL