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Gene: Grin3a (glutamate ionotropic receptor NMDA type subunit 3A) Ictidomys tridecemlineatus

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Symbol:

Grin3a

Name:

glutamate ionotropic receptor NMDA type subunit 3A

RGD ID:

12457966

Description:

ENCODES a protein that exhibits glutamate-gated receptor activity (ortholog); NMDA glutamate receptor activity (ortholog); protein phosphatase 2A binding (ortholog); INVOLVED IN calcium ion transport (ortholog); dendrite development (ortholog); ionotropic glutamate receptor signaling pathway (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH fructose-1,6-bisphosphatase deficiency (ortholog); hereditary fructose intolerance syndrome (ortholog); impotence (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); monoatomic ion channel complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

glutamate ionotropic receptor NMDA type subunit 3A, transcript variant X1; glutamate ionotropic receptor NMDA type subunit 3A, transcript variant X2; glutamate receptor ionotropic, NMDA 3A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	173,173,201 - 173,337,402 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	9,720,767 - 9,885,120 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	9,720,777 - 9,884,984 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

fructose-1,6-bisphosphatase deficiency (ISO)

hereditary fructose intolerance syndrome (ISO)

impotence (ISO)

intellectual disability (ISO)

myoepithelioma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion transmembrane transport (IEA)

calcium ion transport (IEA,ISO)

dendrite development (IEA,ISO)

ionotropic glutamate receptor signaling pathway (IEA,ISO)

monoatomic cation transmembrane transport (ISO)

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (IEA)

negative regulation of dendritic spine development (ISO)

neuron development (ISO)

prepulse inhibition (IEA,ISO)

presynaptic modulation of chemical synaptic transmission (IEA)

regulation of postsynaptic membrane potential (IEA)

regulation of synaptic plasticity (ISO)

response to ethanol (IEA)

rhythmic process (ISO)

Cellular Component

cytoplasm (ISO)

glutamatergic synapse (IEA,ISO)

membrane (IEA)

monoatomic ion channel complex (ISO)

neuron projection (IEA)

neuronal cell body (IEA)

neurotransmitter receptor complex (ISO)

NMDA selective glutamate receptor complex (IEA,ISO)

plasma membrane (IEA)

postsynaptic density membrane (IEA,ISO)

postsynaptic membrane (IEA,ISO)

presynapse (IEA)

synapse (IEA)

Molecular Function

calcium channel activity (IEA)

glutamate-gated receptor activity (ISO)

glycine binding (IEA)

identical protein binding (IEA)

ligand-gated monoatomic ion channel activity (IEA)

NMDA glutamate receptor activity (IEA,ISO)

protein binding (ISO)

protein phosphatase 2A binding (ISO)

serine binding (ISO)

signaling receptor activity (IEA)

transmitter-gated monoatomic ion channel activity (ISO)

transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

alfentanil pharmacodynamics pathway (ISO)

bupivacaine pharmacodynamics pathway (ISO)

buprenorphine pharmacodynamics pathway (ISO)

chloroprocaine pharmacodynamics pathway (ISO)

citalopram pharmacodynamics pathway (ISO)

cocaine pharmacodynamics pathway (ISO)

codeine and morphine pharmacodynamics pathway (ISO)

desipramine pharmacodynamics pathway (ISO)

diphenoxylate pharmacodynamics pathway (ISO)

escitalopram pharmacodynamics pathway (ISO)

ethylmorphine pharmacodynamics pathway (ISO)

excitatory synaptic transmission pathway (ISO)

fentanyl pharmacodynamics pathway (ISO)

fluoxetine pharmacodynamics pathway (ISO)

heroin pharmacodynamics pathway (ISO)

hydrocodone pharmacodynamics pathway (ISO)

hydromorphone pharmacodynamics pathway (ISO)

imipramine pharmacodynamics pathway (ISO)

levacetylmethadol pharmacodynamics pathway (ISO)

levobupivacaine phgarmacodynamics pathway (ISO)

levorphanol pharmacodynamics pathway (ISO)

lidocaine pharmacodynamics pathway (ISO)

mepivacaine pharmacodynamics pathway (ISO)

methadone pharmacodynamics pathway (ISO)

methadone pharmacokinetics pathway (ISO)

nalbuphine pharmacodynamics pathway (ISO)

naloxone pharmacodynamics pathway (ISO)

naltrexone pharmacodynamics pathway (ISO)

nicotine pharmacodynamics pathway (ISO)

oxybuprocaine pharmacodynamics pathway (ISO)

oxycodone pharmacodynamics pathway (ISO)

oxymorphone pharmacodynamics pathway (ISO)

pentazocine pharmacodynamics pathway (ISO)

prilocaine pharmacodynamics pathway (ISO)

procaine pharmacodynamics pathway (ISO)

remifentanil pharmacodynamics pathway (ISO)

ropivacaine pharmacodynamics pathway (ISO)

tramadol pharmacodynamics pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Grin3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	173,173,201 - 173,337,402 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	9,720,767 - 9,885,120 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	9,720,777 - 9,884,984 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GRIN3A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	101,569,352 - 101,738,647 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	101,569,352 - 101,738,647 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	104,331,634 - 104,500,929 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	103,371,456 - 103,540,683 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	101,411,189 - 101,580,417	NCBI
Celera	9	74,845,889 - 75,014,334 (-)	NCBI		Celera
Cytogenetic Map	9	q31.1	NCBI
HuRef	9	73,932,382 - 74,100,688 (-)	NCBI		HuRef
CHM1_1	9	104,478,039 - 104,647,164 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	113,744,124 - 113,912,649 (-)	NCBI		T2T-CHM13v2.0

Grin3a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	49,661,611 - 49,846,023 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	49,661,611 - 49,845,744 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	49,661,611 - 49,846,023 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	49,661,611 - 49,845,744 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	49,678,098 - 49,857,953 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	4	49,693,525 - 49,874,264 (-)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	26.72	NCBI

Grin3a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	68,802,333 - 69,001,880 (-)	NCBI		GRCr8
mRatBN7.2	5	64,006,847 - 64,206,408 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	64,009,980 - 64,206,085 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	65,943,276 - 66,142,503 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	67,762,618 - 67,961,860 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	67,731,985 - 67,931,195 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	64,928,620 - 65,073,012 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	64,928,620 - 65,073,012 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	69,420,058 - 69,564,696 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	66,406,451 - 66,602,353 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	66,411,563 - 66,607,247 (-)	NCBI
Celera	5	63,404,358 - 63,599,048 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

Grin3a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	24,104,820 - 24,273,113 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	24,105,360 - 24,272,533 (+)	NCBI	ChiLan1.0	ChiLan1.0

GRIN3A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	37,628,485 - 37,797,704 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	37,630,856 - 37,800,076 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	72,773,866 - 72,943,790 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	100,767,715 - 100,936,352 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	100,767,715 - 100,941,323 (-)	Ensembl	panpan1.1		panPan2

GRIN3A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	58,271,808 - 58,421,887 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	58,273,377 - 58,421,761 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	56,716,312 - 56,866,073 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	59,411,203 - 59,557,777 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	59,411,203 - 59,557,626 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	57,917,161 - 58,067,281 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	57,930,109 - 58,080,617 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	58,627,851 - 58,778,332 (-)	NCBI		UU_Cfam_GSD_1.0

GRIN3A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	243,259,495 - 243,415,590 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	243,263,202 - 243,416,739 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	271,873,962 - 272,030,759 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GRIN3A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	37,700,311 - 37,865,390 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	37,701,039 - 37,867,041 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	4,693,852 - 4,858,752 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Grin3a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	9,579,752 - 9,756,525 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	9,579,750 - 9,756,396 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005326338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040286112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000002472 ⟹ ENSSTOP00000002210

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936524	9,720,767 - 9,885,120 (-)	Ensembl

RefSeq Acc Id:

XM_005326338 ⟹ XP_005326395

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	173,173,201 - 173,337,395 (-)	NCBI
SpeTri2.0	NW_004936524	9,720,777 - 9,884,979 (-)	NCBI

Sequence:

show sequence

AACCACCCTTTGCTGGCCAGTCGTGTCGCTCCTCCGAGGAAGCAAGCGGCGTTGGCGACTGGGA
GGAAAGAAAACGGAAGAAAGGAAGAGAGGAAGTAGCTGGGCAAGGAGGAAAATGAAGCCAGCGC
TAGGGGATCTGCGGGAGGGTGGCCGATAGTGGAGCAGGGCGGATTTGGCTGCTTCCCCGCATCC
CGGGTGTGAACGCCCTCTCCAACGCGACCTTAGGAAATAAGTGAGTCTTGCCTGGGCGGAAAAG
GAAAAGAAACCAAGTGAGAGCATTGCTCTTCTCTCACCTCTGCTCCCTCGGAACTCCGACTGCT
TCTCAGCCCAGCCGTCTCGCCGGGCCGGACGCAGTGCCCTAGGCGCCCTGCAGATGGGGCGGTC
AGGGAACCGGCGCCCAAGCCGCGGGTGACAGGCGCTGGCCCGCCCGCCTGCCCCGCTCGGCGGA
CGGACCCGGCGGGCAGAGGATGCAAGACAGAGGAACCCGGGAGTAGGATCTGAGACTGCTGAAA
TACGCGCTAGACTCCAACTTGGATGGCCCAGAGACCGCTCTAGCCCCTGGGACAGCTTCACCGC
GTCCAGTGAAGCTGCGCTCGGGACCCGGAGGCGGAGACCTTAGGCGGCGGCTGCAGAGGGGCGA
GCCGGGCGCAGGAGGGGGCGCGCTTTCTCCCTGCGGGTCTCAGTAATGAGGAGACTGAGTTTGT
GGTGGCTGCTAAGCAGGGTCTGTCTGCTGCTGCCGCCGCCCTGCGCGCTGGTGCTGGCCGGGGT
ACCCGGCTCCTCCTCGCACCCGCAGCCCTGCCAGATCCTCAAGCGCATCGGGCACGCGGTGAGG
GTGGGCGCCGTTCACTTGCAGCCCTGGACCACAGCCCCACGCCTAACTAGCCGCACTCTGGACG
GCAACAGGGCAGGTGCCCAGAGGGATGAGCCAGAGCCAGGGACTTGGCGGCCGCCGGCGCCCTC
GCAGGGCGCACGCTGGTTGGGGAGCACTTTGCATGGCCGGGGACCGCCGAGCGCCCGAAAGCCA
GGGGAGGGCGCCGGGGCCGAGACCCTGTGGCCGCGGGACGCCCTCCTGTTCGCCGTGGACAACC
TGAACCGCGTGGAAGGTCTGCTGCCCTACAACCTGTCTTTGGAAGTAGTGATGGCCATCGAGGC
GGGCCTGGGCGATCTGCCGCTTTTGCCCTTCTCCTCCCCTAGCTCGCCATGGAGCAGTGACCCT
TTCTCCTTTCTGCAGAGCGTGTGCCACACTGTGGTGGTGCAAGGGGTATCAGCGCTGCTGGCCT
TTCCCCAGAGCCAGGGCGAGATGATGGAGCTCGACTTGGTCAGCTCCGTCCTGCACATTCCAGT
GATCAGCATCGTCCGCCACGAGTTTCCACGGGAGAGTCAGAATCCCCTTCACCTACAACTGAGT
TTAGAAAATTCATTAAGTTCTGATGCTGATGTCACTGTCTCAATCCTGACCATGAACAACTGGT
ACAATTTTAGCTTGTTGCTGTGCCAGGAAGACTGGAACATCACCGACTTCCTCCTCCTCACCCA
GAACAATTCCAAGTTCCACCTCGGGTCTATCATCAACATCACCGCTAACCTCTCCTCCACCAAG
GACCTCTTGAGCTTCCTGCAGGTCCAACTCGAGAGCGTTAAGAACAGCACCCCCACCATGGTGA
TGTTTGGCTGCGACATGGAGAGTATCCGGCAGATATTTGAAATTACCACCCAGTTCGGGGTAAC
ACCCCTTGAGCTTCATTGGGTGCTGGGAGATTCCCAGAATGTGGAGGAACTGAGGACAGAAGGT
CTACCCTTAGGGCTCATTGCTCATGGAAAAACTACACAGTCGGTGTTTGAGCACTACGTGCAAG
ATGCCATGGAACTGGTCGCCAGAGCAGTAGCCACCGCCACCATGATCCAGCCAGAACTTGCTCT
CCTTCCCAGCACGATGAACTGCATGGAAGTGAAAACTACGAATCTCACTTCAGGACAATATTTA
TCAAGGTTTCTAGCCAACACCACGTTCAGAGGCCTCAGTGGTTCCATCAAAGTAAAAGGTTCCA
CCATCATCAGCTCAGAAAACAACTTTTTCATCTGGAATCTGCAACATGACCCTATGGAAAAGCC
AATGTGGACCCGCTTGGGCAGCTGGCAGGGCGGGAAGATTGTCATGGACTATGGAATATGGCCA
GAACAGGCCCAGAGGCATAAAACCCACTTCCAGCACCCAAGTAAGCTACACTTAAGAGTGGTCA
CCCTGATTGAACACCCATTTGTCTTCACAAGGGAAGTAGATGATGAAGGCTTGTGCCCTGCTGG
CCAACTCTGTCTAGACCCTATGACTAATGACTCCTCCTTATTGGACGGCCTATTTAGTAGCCTC
CATAGCAGTAATGATACAGTGCCAATCAAATTCAAGAAGTGTTGCTATGGATACTGCATTGATC
TGCTGGAAAAGCTAGCAGAAGACATGAACTTTGACTTTGACCTCTATATTGTTGGGGATGGAAA
GTATGGAGCTTGGAAAAATGGGCACTGGACTGGGCTGGTGGGTGATCTCTTGAGTGGGACTGCC
CACATGGCGGTCACTTCCTTCAGCATCAACACTGCACGGAGCCAGGTGATTGATTTCACTAGCC
CTTTCTTCTCCACCAGCTTGGGCATTTTAGTGAGGACCCGAGATACAGCAGCTCCCATTGGAGC
CTTCATGTGGCCACTCCACTGGACTATGTGGCTGGGGATTTTTGTGGCTCTGCATATCACTGCC
ATCTTTCTCACTCTGTATGAATGGAAAAGTCCATTTGGTATGACTCCCAAGGGGCGGAACAGAA
ATAAAGTCTTCTCCTTCTCTTCAGCCTTGAATGTCTGTTATGCCCTCTTGTTTGGTAGAACAGC
AGCCATCAAACCCCCAAAATGCTGGACTGGAAGATTTCTAATGAACCTTTGGGCCATTTTCTGT
ATGTTTTGCCTTTCTACGTATACAGCAAACTTGGCTGCTGTCATGGTAGGTGAGAAGATCTATG
AAGAGCTTTCTGGAATACATGACCCTAAGCTGCACCATCCGTCCCAAGGCTTCCGGTTTGGAAC
TGTCCGGGAGAGCAGTGCTGAAGATTATGTGAGGCAAAGCTTCCCAGAGATGCATGAGTATATG
AGGAGGTACAATGTTCCAGCCACCCCTGATGGAGTGCAGTACCTCAAGAATGATCCAGAGAAAC
TAGACGCCTTCATCATGGACAAAGCCCTTCTGGATTATGAAGTGTCAATAGATGCTGACTGTAA
ACTTCTAACCGTGGGGAAGCCGTTTGCCATAGAAGGATATGGCATTGGTCTCCCACCCAACTCT
CCACTGACCTCCAATATATCTGAGCTAATCAGCCAATATAAGTCACATGGGTTTATGGACGTGC
TACATGACAAGTGGTACAAGATGGTTCCCTGTGGCAAGAGAACTTTCGCTGTCACTGAGACTTT
GCAAATGGGCATCAAACATTTCTCTGGACTCTTCGTGCTGCTGTGCATTGGATTTGGTCTGTCC
ATCTTGACAACCATTGGAGAGCACATAGTGTACAGGCTGCTGTTACCACGAATCAAAAACAAAT
CCAAACTGCAATATTGGCTGCACACCAGTCAGAGATTTCATCGAGCATTAAACACATCATTTGT
AGAAGAAAAGCAACAGCGTTTCAAGACCAAACGTGTGGAAAAGAGGTCCAACATAGGACCCCAT
CAACTCATGGTGTGGAATACTTCCAATATGAGTCATGACAACCAACGAAAATACATCTTTAGTG
ATGAGGGAGGACAAAACCAGCTGGGCATTCGGACCCACCAAGACATCCCTCTCCCTCCAAGGAG
AAGAGAGCTCCCTGCCTCACTGACCACCAATGGGAAAGCCGACAACCTCAACGTAGCTCGGAAT
TCAGTGATGCAGGAACTCTCAGAGCTGGAGAAGCAGATTCAGGTGATCCGCCAGGAGCTACAGT
TGGCTGTGAGCAGAAAAACGGAGCTGGAAGAGTATCAAAGGACAAATCGGACTTGTGAGTCCTA
GGCAATCAGGCTGCCCTCTTCCCCCAACTCCTGGCTTTCCTGAGCCCTTGAGATACTTTGTAAT
GCTCTTTTGTAAGGATTGACAAAGGTGAGGGAAACCAAGATCTAGGTCTTCTAGGGGTCAAGTC
AGCTCTCCCCAGATTAACATGCGGCAGTGATTCTTTTTCCAAACTCACCTCCTAGGTTCTCCAG
GGTAAAAAGCCTTTTCCTAGCAGGAGTCCAAAGTTAGGAGTAACCTCTGTATAAGGGACCTGTG
AACAATCAGACAACCCCTAGCTCCTGTTAACCTTTCACCAGGTGCCACAATAATATTCCCAGGT
TTTAGCCCTTTCTCTGCACTATCAACCAGAGATAAAACTGTTACTCAAACCTGTGTCTTACTGG
GTTGTTGGTTTTAATCTTAACATAAAACAGAATTATCCAGGGCTATAGCTTTTGATACAACTCC
CCAATCTAGATTTGTACCCACATTTCTGAATGGGGAGCAGTAGAAGTGCTAGAGTAACTTAAGG
AAGAGGGCATACTTAAAAATAAAGCAAACTCAATATCATTGCAGGCAAGGATTGACTGGATCAG
GCAAAGAGCCAAGTTCTTAAGAAGGTTCTGGATCTCTGACACCATCCTAACATTTAATAGGAAC
ATGTTTACATACCACTATGAAAAGGAATGGGAATGCGGTGAGGGGGGACAGAGGTCAGGCAAAA
GGGGCCTGAAAAATGCACACCATGCTTTTACAACAAAATCTCTGGACCAGATAGGCCATTTGGC
TAAAGAATGAATATGATTATACTTCTAACCTAACTAAGCATTTCCACTATAGTGCGTGCCTTTT
ATAAAGGAAATGAAAGAGAAAAGCAAAGCAAGGTTAGGATGAACTTGGAATATCCCTATTTTTT
TGCTTGTAATAGGGCATGTGAATTGGACTGCAGGTTAAGGGAAATACTCTGCACATCATTTTCA
GATCAGCAGTCACTTATCAGCCATAAGAATCCAAAAAGTGAACCTTCAGCCCAAGAACATCAGA
AGGCTCAGCATTCAGTAGTCTGTGCTCTGCATATCTATAGGGATATTACCAAGTCAATCTCCCA
TCCTCAAATCCACTCACTTCTGAGGAGCTAAGAACAGGTTTGGATCCCTTTGATTATCTTCCAG
GACCCATCAAACACTAATATAAATAACCTAGCTTCCCCCTTGCCTAGGGATTTTTTTCCCCAGT
AACAATAGCTTGGGCATGCAAAAAGAAATAAATATATGAACTCCAGAACTTCAGTTCCCAGGTG
TTAGCACAGATAAGAATCAGTTAAGGAACTCCTCAGAATGCTGATGGCCAGGACTTTTCCCCAG
AGATTTTGGGAGTTGGGGTTTGGAGGTAGGCTCAGAAACAGCGTTAACTAACACCCCTAGGAAC
ACATGCAGGGGTCCTAAAATTACTCATGAAGAAACACTACTTTGGAAGTTCAGTTTGGCTGCCA
TCATGCATGGGGAGAAATGAGGAGACACTTTTTGAGAATTTTTTCCTTTAACTTCAGCACAGTC
TGCTGATTCACCTTTCACAGTGCACCCTGACCCTAGGGCACCATTGAGGACTAGGTTTTCTTAT
CACTTGTTGCTTTATCCACTCAGTATTCATTTCCCCACCCTGATCAGTTTGAATATCTACAGTA
AGTTCACAGCAGTGGGCCAAGAAGTATGCAGATCTTTAGAAAGTTCACAGTTTCTCCTCTATTT
TTTTTTTTTTTAGTACTATGTCTGCAATTCCACCAAGAGCTATCCAGTGCTCTAGGGGAAATAT
AATACTTTAACCTGTAATTAGATTACACCTTAGCAATTAGTTAACTGAGAAAACTCAGGAGTGG
AGATAAATTCAGAGATGCTTATAAGGGAGGTAAGAGGACTCCAAAATTAGACTTGCGGTCAACT
TCAGATGAAACAGTTCAACAGTGAGGGATCAGGTGAGCTCCCGAACCAGAAAGGACAATTTGCT
TTAAAGTATCTTCCCCCTCCTCACAACCCCACCCTATGCTCAAAAATAGGTTTATAGCTGCCTT
TGGAAGATCATGCCCCTTAGCCATCCCTACCCATTTCTGACAAACAAGGATACCTAGAGATTCT
GCCGCCATACTCCGAGCACCCCTGGATATTTGTGCAGCATGGAAGGCTGATGTACAGGTGTACC
TCAATTCGTGTTAACAGCCATGCTCCTAATGTATGTGGACATTTTTGTAACTCAACTCATATGG
TGACTGTACTTGAGAAGCTATTTAAGGGAACCCAGAGGTGAATTCTTTTGTAAAGAATCCTTTT
GTAATGCAATTAATTATCCCTTAATGTATCTGTTTTGTAAGTTTGGATTTTTGTATATCAGGTT
TACCTTAAGTTTCTCTACTGAGGCATTCTTAGCGGTGGCAATCATACCACCCTATCCACAGAGT
AGAGGACCAGTGCATACTTCTCAAGTACCTTCTGAGGAAGTACCTGGCCAAAATTGTGGCCAAA
TGCAGTGAGAAGCAGCAGGCGGCAAAGGCAGGCTTACTGCTATCAATATTGCTTAAAATATTCC
CAAGTCTTGGGTAAAGAAAAACCATAATTGCTTGTGTTGAAATGAAGCAGTCTTCATGTTCAGT
AGCAATGGTTTTTTAAATGGTAGTAATTGAAAAGTGTTTTGCAATTTGTGAAACAGTGTATTGT
GTTTTGTAAAAAGACTTCATGAAATGGTGGGTCCTTGAAACTCTTCTGTTCTATTCCACCTCTC
TTCTCTCAACTTCCCTCCTCAGGCTCTGAAAAAAAAAAAAAAAAAAAGACCCAACAACAAAGAT
CAGAAGACTTCAGGAACTTCAGGTGGAGGGTTGCATTTTGGTAAATTAGAAAGAGCTAAAAGAT
GCTAGACCTTGCCTCCTCTCATTGGCTTCCATTTCGTGAGATTAGGAAGACTTCTTTTCCAAGC
TCTGGTGCTGGGTAACCTGGTACATGTCCCATCCTCCAAAGGGGAAATCCTGGCACAGGAAGCA
CATACAGCATACTGGGCAAGCTGAAATGGATGTCTTTTTGGTTCATATAAATAATAAGGGCCCC
AAAGCGTTTAGGCCACAAAGTTAAGGAGAAAGGCGATTTCTCCAATAAATAAAAATAGATTGGA
AGAAAGATTGGGACAGCCAAGTGAGGCAGCTAGCCACAGAGCCCAATCAGTTGAGGTCTTTAAT
GTGCGTGGAGGAGACTCCTAATTATTCATGAATCTTGCTGATGCACAAACCCTATAAGGAGCTG
CTGTTTCCCTGTCAGCCCAAGAAGTGCTAAGTGGAACAAGAGTCCAGTGCAACAGTGCTATGAT
CTGTCTCAGTGTTGGTGCTGGGTCTGTCTGAGCCCTGGAGCAAGTTAAGCACTTCCTTGGTGTG
GACAAAGAATAAAGGGAAAAGAAACTACTTTAAAACCTCCTTTCCTCCCAATTTATGTTTTGAT
ACGCAAACCAGAAAATCCCAAGGAAATTGCTTTCTAGTCATTAAAACCACTATCTGCATTGTTC
AGTTTCTCTTTCTTCACCCACCTCAAATGCCCATCTAACCCAGGATTCCCTCACTCTTCTTAGT
TACTGATCATTTTATGAAAATAATGTAATTATAAGTATTTTCTGAAGGTTTGTGAAGAGTATTT
GCATTGTGTCTTCATTTTAATGTGTGCAATCCCTATGCTCCAAGAACCAAAAGCTGTCTTGTGA
GTATCAAGTGAACAGGCTGTTTTGCTCCAGCCACTTTCTTGTACAACAACACGGATGGACAAGA
TGTCCTCAGGTCTTCTCCATCTTCAGTTTCTATGACTGTGGAATAAATGTTCAGATAGAAA

hide sequence

RefSeq Acc Id:

XM_040286111 ⟹ XP_040142045

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	173,173,201 - 173,337,400 (-)	NCBI

RefSeq Acc Id:

XM_040286112 ⟹ XP_040142046

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	173,202,099 - 173,337,402 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005326395	(Get FASTA)	NCBI Sequence Viewer
	XP_040142045	(Get FASTA)	NCBI Sequence Viewer
	XP_040142046	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000002210.3
GenBank Protein	KAG3287625	(Get FASTA)	NCBI Sequence Viewer
	KAG3287626	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005326395 ⟸ XM_005326338
- Peptide Label:	isoform X1
- UniProtKB:	I3M0H3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRLSLWWLLSRVCLLLPPPCALVLAGVPGSSSHPQPCQILKRIGHAVRVGAVHLQPWTTAPRL TSRTLDGNRAGAQRDEPEPGTWRPPAPSQGARWLGSTLHGRGPPSARKPGEGAGAETLWPRDAL LFAVDNLNRVEGLLPYNLSLEVVMAIEAGLGDLPLLPFSSPSSPWSSDPFSFLQSVCHTVVVQG VSALLAFPQSQGEMMELDLVSSVLHIPVISIVRHEFPRESQNPLHLQLSLENSLSSDADVTVSI LTMNNWYNFSLLLCQEDWNITDFLLLTQNNSKFHLGSIINITANLSSTKDLLSFLQVQLESVKN STPTMVMFGCDMESIRQIFEITTQFGVTPLELHWVLGDSQNVEELRTEGLPLGLIAHGKTTQSV FEHYVQDAMELVARAVATATMIQPELALLPSTMNCMEVKTTNLTSGQYLSRFLANTTFRGLSGS IKVKGSTIISSENNFFIWNLQHDPMEKPMWTRLGSWQGGKIVMDYGIWPEQAQRHKTHFQHPSK LHLRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPMTNDSSLLDGLFSSLHSSNDTVPIKFKKCC YGYCIDLLEKLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTAHMAVTSFSINTARSQ VIDFTSPFFSTSLGILVRTRDTAAPIGAFMWPLHWTMWLGIFVALHITAIFLTLYEWKSPFGMT PKGRNRNKVFSFSSALNVCYALLFGRTAAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVM VGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYL KNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKS HGFMDVLHDKWYKMVPCGKRTFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLL PRIKNKSKLQYWLHTSQRFHRALNTSFVEEKQQRFKTKRVEKRSNIGPHQLMVWNTSNMSHDNQ RKYIFSDEGGQNQLGIRTHQDIPLPPRRRELPASLTTNGKADNLNVARNSVMQELSELEKQIQV IRQELQLAVSRKTELEEYQRTNRTCES hide sequence

RefSeq Acc Id:	XP_040142045 ⟸ XM_040286111
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040142046 ⟸ XM_040286112
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSSTOP00000002210 ⟸ ENSSTOT00000002472

Protein Domains

Ionotropic glutamate receptor C-terminal Ionotropic glutamate receptor L-glutamate and

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000002475	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000002472.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.2300	UniProtKB/TrEMBL
	Periplasmic binding protein-like II	UniProtKB/TrEMBL
InterPro	ANF_lig-bd_rcpt	UniProtKB/TrEMBL
	Glu/Gly-bd	UniProtKB/TrEMBL
	Iono_rcpt_met	UniProtKB/TrEMBL
	Ionotropic_Glu_rcpt	UniProtKB/TrEMBL
	Iontro_rcpt	UniProtKB/TrEMBL
	Peripla_BP_I	UniProtKB/TrEMBL
NCBI Gene	Grin3a	ENTREZGENE
PANTHER	GLUTAMATE RECEPTOR IONOTROPIC, NMDA 3A	UniProtKB/TrEMBL
	IONOTROPIC GLUTAMATE RECEPTOR	UniProtKB/TrEMBL
Pfam	ANF_receptor	UniProtKB/TrEMBL
	Lig_chan	UniProtKB/TrEMBL
	Lig_chan-Glu_bd	UniProtKB/TrEMBL
PRINTS	NMDARECEPTOR	UniProtKB/TrEMBL
SMART	Lig_chan-Glu_bd	UniProtKB/TrEMBL
	PBPe	UniProtKB/TrEMBL
Superfamily-SCOP	Periplasmic binding protein-like II	UniProtKB/TrEMBL
	SSF53822	UniProtKB/TrEMBL
UniProt	I3M0H3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - SMPDB