Ccdc42 (coiled-coil domain containing 42)

Gene: Ccdc42 (coiled-coil domain containing 42) Ictidomys tridecemlineatus

Analyze

Symbol:

Ccdc42

Name:

coiled-coil domain containing 42

RGD ID:

12457241

Description:

INVOLVED IN acrosome assembly (ortholog); centrosome cycle (ortholog); cilium assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN centrosome (inferred); manchette (inferred); perinuclear region of cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain containing 42, transcript variant X1; coiled-coil domain containing 42, transcript variant X2; coiled-coil domain-containing protein 42; coiled-coil domain-containing protein 42A

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	48,432,923 - 48,445,652 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936595	1,907,312 - 1,919,305 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936595	1,907,312 - 1,919,305 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acrosome assembly (IEA,ISO)

centrosome cycle (IEA,ISO)

cilium assembly (IEA,ISO)

spermatid development (IEA)

Cellular Component

centrosome (IEA)

manchette (IEA)

perinuclear region of cytoplasm (IEA)

sperm connecting piece (IEA)

sperm principal piece (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ccdc42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	48,432,923 - 48,445,652 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936595	1,907,312 - 1,919,305 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936595	1,907,312 - 1,919,305 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	8,729,935 - 8,744,836 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	8,729,935 - 8,745,219 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	8,633,253 - 8,648,154 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	8,573,977 - 8,588,879 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	8,664,029 - 8,678,936 (-)	NCBI		Celera
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	8,532,149 - 8,547,081 (-)	NCBI		HuRef
CHM1_1	17	8,642,316 - 8,657,225 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	8,636,013 - 8,650,898 (-)	NCBI		T2T-CHM13v2.0

Ccdc42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	68,477,863 - 68,488,777 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	68,477,847 - 68,488,792 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	68,587,037 - 68,597,951 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	68,587,021 - 68,597,966 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	68,400,539 - 68,411,453 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	68,410,250 - 68,414,149 (+)	NCBI		MGSCv36	mm8
Celera	11	75,524,206 - 75,536,769 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI
cM Map	11	41.85	NCBI

Ccdc42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	53,788,833 - 53,799,011 (+)	NCBI		GRCr8
mRatBN7.2	10	53,289,956 - 53,300,135 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	53,289,956 - 53,300,135 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	57,949,747 - 57,959,920 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	57,438,785 - 57,448,960 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	52,947,793 - 52,957,965 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	55,169,312 - 55,179,489 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	55,169,282 - 55,181,416 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	54,913,271 - 54,923,448 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	55,339,083 - 55,349,260 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	52,458,268 - 52,468,446 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Ccdc42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	8,207,590 - 8,224,423 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	8,207,590 - 8,220,426 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	65,004,385 - 65,026,228 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	69,813,573 - 69,835,349 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	42,908,881 - 42,924,815 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	47,642,537 - 47,657,607 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	47,642,537 - 47,660,983 (+)	Ensembl	panpan1.1		panPan2

CCDC42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	33,436,642 - 33,445,644 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	33,436,644 - 33,445,644 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	33,573,388 - 33,582,285 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	33,539,989 - 33,549,077 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	33,539,991 - 33,549,148 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	33,508,031 - 33,516,914 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	33,465,076 - 33,474,163 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	33,641,719 - 33,650,805 (-)	NCBI		UU_Cfam_GSD_1.0

CCDC42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	53,869,567 - 53,884,128 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	53,869,559 - 53,883,929 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	56,619,323 - 56,633,751 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	8,087,741 - 8,103,964 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	8,087,943 - 8,101,960 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	13,279,269 - 13,295,942 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc42
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	11,282,620 - 11,295,222 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	11,282,704 - 11,295,926 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005332862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005332863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000005167 ⟹ ENSSTOP00000004636

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936595	1,907,312 - 1,919,305 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000036119 ⟹ ENSSTOP00000032271

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936595	1,907,312 - 1,919,305 (-)	Ensembl

RefSeq Acc Id:

XM_005332862 ⟹ XP_005332919

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	48,432,923 - 48,445,639 (-)	NCBI
SpeTri2.0	NW_004936595	1,907,312 - 1,919,305 (-)	NCBI

Sequence:

show sequence

ATGAGTCTGGGCATCATGGAAGAGGAAGACCTGGCTGAATACTTCCGGCTTCAGTATGGGGAGC
GCCTACTGCAACTGCTGCAGAAGTTCCCCAATATGCAAGAACAGTCAGATTCCCCATCCATCCA
GCTATTGGAAAAGAAAAAGGAAGCCAAGATCATGCATCATGCTATGGAACAGAAGAAGGAGACA
TTTAAGCGCAGAATGGAAAGCCTCAACCTGCGCTGGGAGGAACTGGGAGTCAAGGAAGAACAGC
TGAAAGCCCACATCCAGAAATTTGAGCAGTTCATCCAGGAAAATGACCAGAAACGGATCCGAGC
CCTGAAGAAAGCCAACAAGGAGCGGGAACTCAAAAGGCAGCGCCTCCGGGAACTGGCTAAGGCC
AAGCAGGAGATGGCGGCCTTGCGGCTGGAGCACCAGCGGCTGAGCGTCAAGCTGCAGAACTACT
CCATCTTCAACAAGTACCTGGAAAAGGTGGTGGAGAACTCCGAGTTTGAGGAGATCCATGAGGT
GATCGGACGCTACAAGACGTTGATGAGCATGCACCATGATCTCATGCAATCAGCGCAGGAGAGC
CAGGAGCAGATAGAGCGTGCCAAGGCGCGACTGGCTCGCTACATGGAGGAAAAGGACGATGAGA
TTCTCCAGCACAACAATGAGCTGGCGCGGCTGCAGATGCGCTTTGACCGTGCCCGCAGCGATGT
CATCATCTGGGAATCTCGCTGGGCACACATCCAGAATACAGCAGCCAAGAAGACCCTATTGCTT
GGCACCATTAAGATGGCAACGCTGAACCTGTTCCAGATCGTGAGCAAACAGCTAAAGGAGACAG
CCCAAGTATCCCTGGAGGACACGCACAAACAGCTGGACATGATCCAACAGTTTATCCAAGACCT
GTCGGACATCTGGGCAGAGGTGAAGAGGAAGGAACAGCAGCAAATCCGGGTGTAA

hide sequence

RefSeq Acc Id:

XM_005332863 ⟹ XP_005332920

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	48,432,923 - 48,445,645 (-)	NCBI
SpeTri2.0	NW_004936595	1,907,312 - 1,919,305 (-)	NCBI

Sequence:

show sequence

ATGAGTCTGGGCATCATGGAAGAGGAAGACCTGGCTGAATACTTCCGGCTTCAGTATGGGGAGC
GCCTACTGCAACTGCTGCAGAAGTTCCCCAATATGCAAGAACAGTCAGATTCCCCATCCATCCA
GCTATTGGAAAAGAAAAAGGAAGCCAAGATCATGCATCATGCTATGGAACAGAAGAAGGAGACA
TTTAAGCGCAGAATGGAAAGCCTCAACCTGCGCTGGGAGGAACTGGGAGTCAAGGAAGAACAGC
TGAAAGCCCACATCCAGAAATTTGAGCAGTTCATCCAGGAAAATGACCAGAAACGGATCCGAGC
CCTGAAGAAAGCCAACAAGGAGCGGGAACTCAAAAGGCAGCGCCTCCGGGAACTGGCTAAGGCC
AAGCAGGAGATGGCGGCCTTGCGGCTGGAGCACCAGCGGCTGAGCGTCAAGCTGCAGAACTACT
CCATCTTCAACAAGTACCTGGAAAAGGTGGTGGAGAACTCCGAGGAATCTCGCTGGGCACACAT
CCAGAATACAGCAGCCAAGAAGACCCTATTGCTTGGCACCATTAAGATGGCAACGCTGAACCTG
TTCCAGATCGTGAGCAAACAGCTAAAGGAGACAGCCCAAGTATCCCTGGAGGACACGCACAAAC
AGCTGGACATGATCCAACAGTTTATCCAAGACCTGTCGGACATCTGGGCAGAGGTGAAGAGGAA
GGAACAGCAGCAAATCCGGGTGTAA

hide sequence

RefSeq Acc Id:

XR_005726493

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	48,432,923 - 48,445,652 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005332919	(Get FASTA)	NCBI Sequence Viewer
	XP_005332920	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000004636.2
	ENSSTOP00000032271.1
GenBank Protein	KAG3269959	(Get FASTA)	NCBI Sequence Viewer
	KAG3269960	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005332920 ⟸ XM_005332863
- Peptide Label:	isoform X2
- UniProtKB:	A0A287DFC9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLGIMEEEDLAEYFRLQYGERLLQLLQKFPNMQEQSDSPSIQLLEKKKEAKIMHHAMEQKKET FKRRMESLNLRWEELGVKEEQLKAHIQKFEQFIQENDQKRIRALKKANKERELKRQRLRELAKA KQEMAALRLEHQRLSVKLQNYSIFNKYLEKVVENSEESRWAHIQNTAAKKTLLLGTIKMATLNL FQIVSKQLKETAQVSLEDTHKQLDMIQQFIQDLSDIWAEVKRKEQQQIRV hide sequence

RefSeq Acc Id:	XP_005332919 ⟸ XM_005332862
- Peptide Label:	isoform X1
- UniProtKB:	I3M5L0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLGIMEEEDLAEYFRLQYGERLLQLLQKFPNMQEQSDSPSIQLLEKKKEAKIMHHAMEQKKET FKRRMESLNLRWEELGVKEEQLKAHIQKFEQFIQENDQKRIRALKKANKERELKRQRLRELAKA KQEMAALRLEHQRLSVKLQNYSIFNKYLEKVVENSEFEEIHEVIGRYKTLMSMHHDLMQSAQES QEQIERAKARLARYMEEKDDEILQHNNELARLQMRFDRARSDVIIWESRWAHIQNTAAKKTLLL GTIKMATLNLFQIVSKQLKETAQVSLEDTHKQLDMIQQFIQDLSDIWAEVKRKEQQQIRV hide sequence

RefSeq Acc Id:

ENSSTOP00000004636 ⟸ ENSSTOT00000005167

RefSeq Acc Id:

ENSSTOP00000032271 ⟸ ENSSTOT00000036119

Protein Domains

DUF4200

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000005168	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000005167.2	UniProtKB/TrEMBL
	ENSSTOT00000036119.1	UniProtKB/TrEMBL
InterPro	DUF4200	UniProtKB/TrEMBL
NCBI Gene	Ccdc42	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 42	UniProtKB/TrEMBL
	DUF4200 DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	DUF4200	UniProtKB/TrEMBL
UniProt	A0A287DFC9	ENTREZGENE, UniProtKB/TrEMBL
	I3M5L0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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