Ebpl (EBP like) - Rat Genome Database

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Gene: Ebpl (EBP like) Ictidomys tridecemlineatus
Analyze
Symbol: Ebpl
Name: EBP like
RGD ID: 12456992
Description: ENCODES a protein that exhibits cholestenol delta-isomerase activity (inferred); INVOLVED IN sterol metabolic process (inferred); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: emopamil binding protein like; emopamil-binding protein-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945159,222,363 - 159,247,403 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365652,706,788 - 2,731,453 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365652,706,788 - 2,731,453 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ebpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945159,222,363 - 159,247,403 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365652,706,788 - 2,731,453 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365652,706,788 - 2,731,453 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EBPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381349,660,674 - 49,691,487 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1349,660,674 - 49,691,486 (-)EnsemblGRCh38hg38GRCh38
GRCh371350,234,810 - 50,265,623 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361349,132,863 - 49,163,612 (-)NCBINCBI36Build 36hg18NCBI36
Build 341349,132,863 - 49,163,612NCBI
Celera1331,289,746 - 31,320,576 (-)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1331,028,176 - 31,058,957 (-)NCBIHuRef
CHM1_11350,202,353 - 50,233,179 (-)NCBICHM1_1
T2T-CHM13v2.01348,879,582 - 48,910,398 (-)NCBIT2T-CHM13v2.0
Ebpl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391461,577,212 - 61,597,894 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1461,569,191 - 61,597,888 (-)EnsemblGRCm39 Ensembl
GRCm381461,339,763 - 61,360,445 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1461,331,742 - 61,360,439 (-)EnsemblGRCm38mm10GRCm38
MGSCv371461,958,600 - 61,979,282 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361460,294,860 - 60,314,549 (-)NCBIMGSCv36mm8
Celera1459,106,822 - 59,127,515 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1432.72NCBI
Ebpl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81539,684,140 - 39,707,537 (-)NCBIGRCr8
mRatBN7.21535,508,074 - 35,531,472 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1535,508,074 - 35,531,472 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1537,372,859 - 37,396,078 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01538,523,505 - 38,546,724 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01536,968,764 - 36,992,161 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01541,668,119 - 41,691,518 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1541,668,119 - 41,691,518 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01545,472,241 - 45,495,631 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41540,484,464 - 40,506,451 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11540,500,163 - 40,522,151 (-)NCBI
Celera1535,205,464 - 35,228,861 (-)NCBICelera
Cytogenetic Map15p12NCBI
Ebpl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554313,112,134 - 3,121,780 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554313,114,160 - 3,122,448 (-)NCBIChiLan1.0ChiLan1.0
EBPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21451,074,227 - 51,130,358 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11349,751,192 - 49,782,032 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01330,799,832 - 30,830,670 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11349,548,230 - 49,578,820 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1349,548,230 - 49,578,820 (-)Ensemblpanpan1.1panPan2
EBPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,116,588 - 2,137,935 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,116,131 - 2,182,633 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha222,145,655 - 2,166,752 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0222,106,939 - 2,128,685 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,106,435 - 2,173,674 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,016,192 - 2,037,355 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,065,607 - 2,086,720 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,083,831 - 2,104,999 (+)NCBIUU_Cfam_GSD_1.0
EBPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,040,011 - 18,072,633 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,039,978 - 18,150,729 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,297,518 - 18,444,593 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EBPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1327,576,087 - 27,606,770 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl327,576,329 - 27,606,684 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605716,276,627 - 16,307,505 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ebpl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247484,967,698 - 5,000,728 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247484,967,611 - 5,000,156 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005330239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000002993   ⟹   ENSSTOP00000002674
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365652,706,788 - 2,731,453 (-)Ensembl
RefSeq Acc Id: XM_005330239   ⟹   XP_005330296
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945159,222,363 - 159,247,403 (-)NCBI
SpeTri2.0NW_0049365652,706,788 - 2,731,453 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005330296 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002674.2
GenBank Protein KAG3293105 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005330296   ⟸   XM_005330239
- UniProtKB: I3M1H3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000002674   ⟸   ENSSTOT00000002993
Protein Domains
EXPERA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002999 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002993.3 UniProtKB/TrEMBL
InterPro EBP UniProtKB/TrEMBL
  EXPERA UniProtKB/TrEMBL
NCBI Gene Ebpl ENTREZGENE
PANTHER EMOPAMIL-BINDING PROTEIN-LIKE UniProtKB/TrEMBL
  PTHR14207 UniProtKB/TrEMBL
Pfam EBP UniProtKB/TrEMBL
PROSITE EXPERA UniProtKB/TrEMBL
UniProt I3M1H3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-15 Ebpl  EBP like    emopamil binding protein like  Symbol and/or name change 5135510 APPROVED