Cd207 (CD207 molecule) - Rat Genome Database

Name: Cd207
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cd207 (CD207 molecule) Ictidomys tridecemlineatus

Analyze

Symbol:

Cd207

Name:

CD207 molecule

RGD ID:

12456580

Description:

ENCODES a protein that exhibits carbohydrate binding (inferred); INVOLVED IN defense response to virus (inferred); ASSOCIATED WITH dystonia (ortholog); genetic disease (ortholog); Methylmalonyl-CoA Epimerase Deficiency (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C-type lectin domain family 4 member K

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CD207 (CD207 molecule)	NCBI	Ortholog
Mus musculus (house mouse):	Cd207 (CD207 antigen)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cd207 (CD207 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cd207 (CD207 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CD207 (CD207 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CD207 (CD207 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CD207 (CD207 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CD207 (CD207 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cd207 (CD207 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	13,537,234 - 13,542,765 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	15,029,216 - 15,034,075 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	15,029,086 - 15,079,067 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dystonia (ISO)

genetic disease (ISO)

Methylmalonyl-CoA Epimerase Deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

defense response to virus (IEA)

Cellular Component

membrane (IEA)

Molecular Function

carbohydrate binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Cd207
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	13,537,234 - 13,542,765 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	15,029,216 - 15,034,075 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	15,029,086 - 15,079,067 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CD207
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	70,824,130 - 70,835,816 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	70,830,211 - 70,835,816 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	71,057,342 - 71,062,946 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	70,910,855 - 70,916,461 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	70,969,002 - 70,974,608	NCBI
Celera	2	70,908,034 - 70,913,641 (-)	NCBI		Celera
Cytogenetic Map	2	p13.3	NCBI
HuRef	2	70,793,731 - 70,799,342 (-)	NCBI		HuRef
CHM1_1	2	70,986,667 - 70,992,278 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	70,835,151 - 70,871,919 (-)	NCBI		T2T-CHM13v2.0

Cd207
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	83,648,189 - 83,654,839 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	83,648,197 - 83,654,839 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	83,671,207 - 83,677,857 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	83,671,215 - 83,677,857 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	83,621,201 - 83,627,851 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	83,636,873 - 83,643,515 (-)	NCBI		MGSCv36	mm8
Celera	6	85,653,930 - 85,660,605 (-)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	35.94	NCBI

Cd207
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	117,712,879 - 117,719,191 (-)	NCBI		GRCr8
mRatBN7.2	4	116,155,229 - 116,161,587 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	116,155,212 - 116,161,518 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	4	115,333,124 - 115,355,034 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	115,348,491 - 115,354,795 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	179,937,840 - 179,944,063 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	117,866,542 - 117,872,334 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	105,132,186 - 105,154,079 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Cd207
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	14,355,739 - 14,361,318 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	14,355,739 - 14,361,326 (+)	NCBI	ChiLan1.0	ChiLan1.0

CD207
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	55,513,620 - 55,559,404 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	55,517,564 - 55,563,348 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	70,893,068 - 70,898,668 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	72,006,822 - 72,012,421 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	72,006,822 - 72,012,421 (-)	Ensembl	panpan1.1		panPan2

CD207
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	69,186,698 - 69,190,289 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	69,074,316 - 69,077,682 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	70,209,265 - 70,212,632 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	10	69,927,765 - 69,931,117 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	70,189,158 - 70,192,510 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	70,488,678 - 70,492,044 (-)	NCBI		UU_Cfam_GSD_1.0

CD207
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	71,668,223 - 71,675,358 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	71,668,233 - 71,674,871 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CD207
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	36,250,858 - 36,284,468 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	36,278,722 - 36,283,445 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	75,737,723 - 75,743,628 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cd207
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624762	2,558,222 - 2,561,845 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624762	2,528,394 - 2,561,720 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005322128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002483613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002483614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002483615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010001352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000023176 ⟹ ENSSTOP00000017820

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936491	15,029,216 - 15,034,075 (-)	Ensembl

RefSeq Acc Id:

XM_005322128 ⟹ XP_005322185

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	13,537,234 - 13,542,765 (+)	NCBI
SpeTri2.0	NW_004936491	15,029,086 - 15,034,117 (-)	NCBI

Sequence:

show sequence

TGGATAAAACGTGCTTGGGGAGACAGGTGGCCAGAAGCACCTGTGCATGAGTGTGGGGGATGAA
GGCCGCAGAGATGGAGGTCCCCGATGCGCACTTCACTGTGGACAAACAGAATATCTCCCTCTGG
CCCCGAGAGCCTCCTCCCAAGCAGGATCCATCTCTGGTCCTGCGGAAACCTCTCATCCTCCGCG
TGGCATTAATCTGCCTGTCACTGGTCCTGGTCGCCTCCGTCGTGCTGCAAGCCATTCTCTATCC
CTGGTTTATGGGCACAATATCGGACATAAAGACAGATGCCCAGTTGCTGAAAGGTCGTGTGAAC
AACGTCAGTGCCCTGAGTTCTAAAGTTGAGAAGAACAGCCGTGATGTGGAGGCAGCCGGCGTGC
AGATCCGGATGGTGGATGCCAGCCTGGATAGTGTGAATGCTCAGATCCTGACATTGACAGCCAG
CATAGAAAAAGCCACTGCAGAGATCCAAAGCTTAACAAGAAATTGGGAGGAGGTGGGTCATTTA
AATGCCCAAATCCCAGAGTTAAAAAGAGATTTGGACAAAGCCAGTGCTTTAAATGCCAAGGTCC
GGGGACTGCAGAGCAGCTTGGAGACCATCAGCAAGTCACTCAAACAACAAAATGACATCCTGCA
GATGGTTTCCCAAGACTGGAAGTACTTCAAGGGGAACTTCTACTACTTCTCTCACACCCCAAAG
ACCTGGTACAGTGCCCAGCAGTTCTGTGTGTCCAGGAACTCACATCTGACTTCAGTGACCTCCA
AGAGCGAGCAGGAGTTTCTGTACAAGACAGCAAGTGACTTTCCATTCTGGATTGGCCTAACCAA
AACAGGGAGTGAAGGGAACTGGTACTGGATGGATAATACTCCATTCAATGACCCAAGTCTGAGG
TTCTGGATTCCAGGTGAGCCCAACAATGCGGGAAACAATGAACACTGTGCCGATATGAGGTTTC
CTTTGCTCATGTCATGGAATGACGCTTCCTGTGATAAAACGTTACCTTTCGTTTGTAAGCAGCC
CTACGTTCCATCAGAACCCTGAAAGGACTTGCCCCAGCTCAATGCTTGTTGAATTTGAGGAACT
GTCTCTTCTCAATATGCCAGGATGACTTTGTGTTTTTTTTCCCCCCTTCTTCAAAGTTAACCCC
ATGGCATCCTGAAGTCTGTTTTTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005322185	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017820.2

RefSeq Acc Id:

XP_005322185 ⟸ XM_005322128

- UniProtKB:

I3N0C4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKAAEMEVPDAHFTVDKQNISLWPREPPPKQDPSLVLRKPLILRVALICLSLVLVASVVLQAIL
YPWFMGTISDIKTDAQLLKGRVNNVSALSSKVEKNSRDVEAAGVQIRMVDASLDSVNAQILTLT
ASIEKATAEIQSLTRNWEEVGHLNAQIPELKRDLDKASALNAKVRGLQSSLETISKSLKQQNDI
LQMVSQDWKYFKGNFYYFSHTPKTWYSAQQFCVSRNSHLTSVTSKSEQEFLYKTASDFPFWIGL
TKTGSEGNWYWMDNTPFNDPSLRFWIPGEPNNAGNNEHCADMRFPLLMSWNDASCDKTLPFVCK
QPYVPSEP

hide sequence

RefSeq Acc Id:

ENSSTOP00000017820 ⟸ ENSSTOT00000023176

Protein Domains

C-type lectin

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000022452	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000023176.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.170	UniProtKB/TrEMBL
	3.10.100.10	UniProtKB/TrEMBL
InterPro	C-type_lectin-like	UniProtKB/TrEMBL
	C-type_lectin-like/link_sf	UniProtKB/TrEMBL
	C-type_lectin_CS	UniProtKB/TrEMBL
	CD209-like_CTLD	UniProtKB/TrEMBL
	CTDL_fold	UniProtKB/TrEMBL
NCBI Gene	Cd207	ENTREZGENE
PANTHER	C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180	UniProtKB/TrEMBL
	FI15750P1-RELATED	UniProtKB/TrEMBL
Pfam	Lectin_C	UniProtKB/TrEMBL
PROSITE	C_TYPE_LECTIN_1	UniProtKB/TrEMBL
	C_TYPE_LECTIN_2	UniProtKB/TrEMBL
SMART	CLECT	UniProtKB/TrEMBL
Superfamily-SCOP	Bacterial hemolysins	UniProtKB/TrEMBL
	SSF56436	UniProtKB/TrEMBL
UniProt	I3N0C4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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