Ephb4 (EPH receptor B4) - Rat Genome Database

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Gene: Ephb4 (EPH receptor B4) Ictidomys tridecemlineatus
Analyze
Symbol: Ephb4
Name: EPH receptor B4
RGD ID: 12455958
Description: ENCODES a protein that exhibits ATP binding (inferred); ephrin receptor activity (inferred); nucleotide binding (inferred); INVOLVED IN angiogenesis (ortholog); heart morphogenesis (ortholog); positive regulation of aorta morphogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH arteriovenous malformation (ortholog); Breast Neoplasms (ortholog); cancer (ortholog); FOUND IN dendrite (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ephrin type-B receptor 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,224,893 - 133,241,678 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543794,725 - 811,637 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936543794,837 - 811,637 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ephb4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,224,893 - 133,241,678 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543794,725 - 811,637 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936543794,837 - 811,637 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPHB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,802,565 - 100,827,523 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,802,565 - 100,827,523 (-)EnsemblGRCh38hg38GRCh38
GRCh377100,400,187 - 100,425,145 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367100,238,123 - 100,263,079 (-)NCBINCBI36Build 36hg18NCBI36
Build 347100,044,837 - 100,069,794NCBI
Celera795,130,741 - 95,155,701 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef795,030,927 - 95,055,371 (-)NCBIHuRef
CHM1_17100,330,777 - 100,355,761 (-)NCBICHM1_1
T2T-CHM13v2.07102,042,646 - 102,067,608 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,759,792 - 99,784,748 (-)NCBI
Ephb4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395137,348,371 - 137,372,784 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5137,348,371 - 137,376,931 (+)EnsemblGRCm39 Ensembl
GRCm385137,350,109 - 137,374,522 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5137,350,109 - 137,378,669 (+)EnsemblGRCm38mm10GRCm38
MGSCv375137,791,337 - 137,815,750 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365137,579,945 - 137,604,277 (+)NCBIMGSCv36mm8
Celera5134,333,170 - 134,357,666 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.38NCBI
Ephb4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81224,963,174 - 24,988,473 (-)NCBIGRCr8
mRatBN7.21219,326,411 - 19,351,667 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,326,427 - 19,351,314 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01222,393,338 - 22,418,332 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,393,330 - 22,417,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01224,407,927 - 24,432,912 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1221,128,289 - 21,153,496 (-)NCBICelera
Cytogenetic Map12q12NCBI
Ephb4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573132,328 - 152,595 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955573132,328 - 150,879 (+)NCBIChiLan1.0ChiLan1.0
EPHB4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,706,109 - 118,731,025 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,970,743 - 166,995,654 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,827,550 - 92,852,462 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17106,223,427 - 106,248,022 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,223,427 - 106,248,022 (-)Ensemblpanpan1.1panPan2
EPHB4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.168,925,303 - 8,943,284 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl68,924,686 - 8,942,324 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha610,631,634 - 10,649,370 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.068,861,650 - 8,879,327 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl68,861,521 - 8,879,316 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.168,714,171 - 8,731,877 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.068,692,052 - 8,709,742 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.068,874,020 - 8,891,770 (+)NCBIUU_Cfam_GSD_1.0
EPHB4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,668,859 - 8,689,783 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,671,052 - 8,689,778 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.238,097,951 - 8,116,183 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EPHB4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,389,884 - 12,416,746 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2812,389,942 - 12,416,920 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,908,378 - 3,935,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ephb4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,320,697 - 16,339,777 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474016,320,672 - 16,339,454 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005328473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000013743   ⟹   ENSSTOP00000012314
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936543795,729 - 811,578 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041858   ⟹   ENSSTOP00000026645
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936543794,725 - 811,637 (-)Ensembl
RefSeq Acc Id: XM_005328473   ⟹   XP_005328530
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344133,224,893 - 133,241,678 (+)NCBI
SpeTri2.0NW_004936543794,837 - 811,637 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328530 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012314.3
  ENSSTOP00000026645.1
GenBank Protein KAG3259883 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005328530   ⟸   XM_005328473
- UniProtKB: A0A287CZ82 (UniProtKB/TrEMBL),   I3MLL6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000026645   ⟸   ENSSTOT00000041858
RefSeq Acc Id: ENSSTOP00000012314   ⟸   ENSSTOT00000013743
Protein Domains
Eph LBD   Fibronectin type-III   Protein kinase   SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013737 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013743.3 UniProtKB/TrEMBL
  ENSSTOT00000041858.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  ephrin a2 ectodomain UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
  Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro EPH-B4_SAM UniProtKB/TrEMBL
  Eph_TM UniProtKB/TrEMBL
  EphB4_rcpt_lig-bd UniProtKB/TrEMBL
  Ephrin_rcpt_lig-bd_dom UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr-kin_ephrin_A/B_rcpt-like UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_ephrin_rcpt UniProtKB/TrEMBL
  Tyr_kinase_rcpt_V_CS UniProtKB/TrEMBL
NCBI Gene Ephb4 ENTREZGENE
PANTHER EPH RECEPTOR A5 UniProtKB/TrEMBL
  EPHRIN TYPE-B RECEPTOR 2 UniProtKB/TrEMBL
Pfam EphA2_TM UniProtKB/TrEMBL
  Ephrin_lbd UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  PK_Tyr_Ser-Thr UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
PIRSF TyrPK_ephrin_receptor UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/TrEMBL
  TYRKINASE UniProtKB/TrEMBL
PROSITE EPH_LBD UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_V_1 UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/TrEMBL
SMART EPH_lbd UniProtKB/TrEMBL
  Ephrin_rec_like UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  TyrKc UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A287CZ82 ENTREZGENE, UniProtKB/TrEMBL
  I3MLL6 ENTREZGENE, UniProtKB/TrEMBL