Caprin2 (caprin family member 2) - Rat Genome Database

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Gene: Caprin2 (caprin family member 2) Ictidomys tridecemlineatus
Analyze
Symbol: Caprin2
Name: caprin family member 2
RGD ID: 12455340
Description: ENCODES a protein that exhibits RNA binding (inferred); signaling receptor binding (inferred); INVOLVED IN negative regulation of cell growth (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrion (ortholog); receptor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: caprin family member 2, transcript variant X1; caprin family member 2, transcript variant X2; caprin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494578,118,412 - 78,162,571 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366074,950,765 - 4,995,936 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366074,951,658 - 4,995,936 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Caprin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494578,118,412 - 78,162,571 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366074,950,765 - 4,995,936 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366074,951,658 - 4,995,936 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAPRIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,709,553 - 30,754,951 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,709,552 - 30,823,302 (-)EnsemblGRCh38hg38GRCh38
GRCh371230,862,487 - 30,907,885 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361230,753,753 - 30,798,715 (-)NCBINCBI36Build 36hg18NCBI36
Celera1236,005,312 - 36,050,258 (-)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1230,627,850 - 30,672,786 (-)NCBIHuRef
CHM1_11230,827,509 - 30,872,472 (-)NCBICHM1_1
T2T-CHM13v2.01230,584,217 - 30,698,047 (-)NCBIT2T-CHM13v2.0
Caprin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396148,743,990 - 148,797,756 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6148,743,990 - 148,797,735 (-)EnsemblGRCm39 Ensembl
GRCm386148,842,492 - 148,896,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6148,842,492 - 148,896,237 (-)EnsemblGRCm38mm10GRCm38
MGSCv376148,791,034 - 148,844,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366148,799,658 - 148,853,407 (-)NCBIMGSCv36mm8
Celera6151,880,474 - 151,934,157 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.62NCBI
Caprin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84183,537,935 - 183,592,162 (-)NCBIGRCr8
mRatBN7.24181,806,105 - 181,860,754 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4181,806,575 - 181,860,830 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4188,077,467 - 188,135,699 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04183,861,997 - 183,920,226 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04182,482,491 - 182,540,722 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04183,304,993 - 183,374,195 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,305,813 - 183,374,195 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04247,436,446 - 247,504,605 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4170,272,780 - 170,329,622 (-)NCBICelera
Cytogenetic Map4q44NCBI
Caprin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555054,431,415 - 4,477,495 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555054,431,921 - 4,477,434 (+)NCBIChiLan1.0ChiLan1.0
CAPRIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21066,031,586 - 66,076,987 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11266,027,966 - 66,073,380 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01255,529,976 - 55,575,375 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11258,157,568 - 58,202,690 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1258,157,568 - 58,202,690 (+)Ensemblpanpan1.1panPan2
CAPRIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12717,518,966 - 17,560,866 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2717,517,155 - 17,560,511 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2728,857,745 - 28,900,747 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02717,700,516 - 17,743,641 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2717,700,477 - 17,743,641 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12717,509,755 - 17,552,938 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02717,540,916 - 17,584,108 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02729,010,138 - 29,053,645 (-)NCBIUU_Cfam_GSD_1.0
CAPRIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl543,044,266 - 43,087,748 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1543,042,910 - 43,087,644 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2546,881,431 - 46,926,382 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAPRIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11130,394,936 - 30,440,888 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1130,394,899 - 30,439,876 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660694,554,765 - 4,603,659 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Caprin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247785,027,406 - 5,080,859 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247785,026,854 - 5,080,741 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000004702   ⟹   ENSSTOP00000004220
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366074,951,904 - 4,995,582 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000037828   ⟹   ENSSTOP00000028502
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366074,950,765 - 4,995,936 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000042791   ⟹   ENSSTOP00000032397
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366074,951,904 - 4,995,582 (+)Ensembl
RefSeq Acc Id: XM_040280831   ⟹   XP_040136765
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494578,135,497 - 78,161,816 (+)NCBI
RefSeq Acc Id: XM_040280833   ⟹   XP_040136767
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494578,118,414 - 78,162,571 (+)NCBI
RefSeq Acc Id: XM_040280834   ⟹   XP_040136768
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494578,118,412 - 78,162,571 (+)NCBI
RefSeq Acc Id: XM_040280835   ⟹   XP_040136769
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494578,118,414 - 78,161,816 (+)NCBI
RefSeq Acc Id: XM_040280836   ⟹   XP_040136770
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494578,118,412 - 78,161,816 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040136768   ⟸   XM_040280834
- Peptide Label: isoform X3
- UniProtKB: I3M4Q6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040136770   ⟸   XM_040280836
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040136767   ⟸   XM_040280833
- Peptide Label: isoform X2
- UniProtKB: I3M4Q6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040136769   ⟸   XM_040280835
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040136765   ⟸   XM_040280831
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000028502   ⟸   ENSSTOT00000037828
RefSeq Acc Id: ENSSTOP00000004220   ⟸   ENSSTOT00000004702
RefSeq Acc Id: ENSSTOP00000032397   ⟸   ENSSTOT00000042791
Protein Domains
C1q


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004672 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004702.3 UniProtKB/TrEMBL
  ENSSTOT00000037828.1 UniProtKB/TrEMBL
  ENSSTOT00000042791.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro C1q_dom UniProtKB/TrEMBL
  Caprin UniProtKB/TrEMBL
  Caprin-1_C UniProtKB/TrEMBL
  Caprin-1_dimer UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
NCBI Gene Caprin2 ENTREZGENE
PANTHER CAPRIN-2 UniProtKB/TrEMBL
  PTHR22922 UniProtKB/TrEMBL
Pfam C1q UniProtKB/TrEMBL
  Caprin-1_C UniProtKB/TrEMBL
  Caprin-1_dimer UniProtKB/TrEMBL
PRINTS COMPLEMNTC1Q UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/TrEMBL
SMART C1Q UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniProt A0A287D4Q5_ICTTR UniProtKB/TrEMBL
  A0A287DFV4_ICTTR UniProtKB/TrEMBL
  I3M4Q6 ENTREZGENE, UniProtKB/TrEMBL