Lgi1 (leucine rich glioma inactivated 1) - Rat Genome Database

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Gene: Lgi1 (leucine rich glioma inactivated 1) Ictidomys tridecemlineatus
Analyze
Symbol: Lgi1
Name: leucine rich glioma inactivated 1
RGD ID: 12455235
Description: ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN positive regulation of synaptic transmission (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); epilepsy (ortholog); epilepsy with generalized tonic-clonic seizures (ortholog); FOUND IN axon initial segment (ortholog); dendrite (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich glioma-inactivated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721339,607,174 - 39,643,265 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366011,239,771 - 1,275,850 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366011,242,022 - 1,275,842 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Lgi1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721339,607,174 - 39,643,265 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366011,239,771 - 1,275,850 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366011,242,022 - 1,275,842 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LGI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381093,757,936 - 93,798,159 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1093,757,840 - 93,806,272 (+)EnsemblGRCh38hg38GRCh38
GRCh371095,517,693 - 95,557,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361095,507,668 - 95,547,906 (+)NCBINCBI36Build 36hg18NCBI36
Build 341095,507,667 - 95,547,906NCBI
Celera1089,258,689 - 89,298,048 (+)NCBICelera
Cytogenetic Map10q23.33NCBI
HuRef1089,145,309 - 89,184,670 (+)NCBIHuRef
CHM1_11095,800,134 - 95,839,500 (+)NCBICHM1_1
T2T-CHM13v2.01094,637,831 - 94,677,073 (+)NCBIT2T-CHM13v2.0
Lgi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391938,253,135 - 38,297,387 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1938,252,984 - 38,300,662 (+)EnsemblGRCm39 Ensembl
GRCm381938,264,687 - 38,308,939 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1938,264,536 - 38,312,214 (+)EnsemblGRCm38mm10GRCm38
MGSCv371938,339,272 - 38,383,429 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361938,329,926 - 38,374,083 (+)NCBIMGSCv36mm8
Celera1939,059,488 - 39,103,642 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1932.9NCBI
Lgi1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81245,455,691 - 245,497,036 (+)NCBIGRCr8
mRatBN7.21236,043,269 - 236,084,617 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1236,042,954 - 236,084,616 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,465,730 - 244,506,680 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01251,360,549 - 251,401,450 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01244,198,790 - 244,239,705 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01256,955,944 - 256,996,835 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1256,955,652 - 256,999,253 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01264,436,441 - 264,477,332 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,593,236 - 242,634,141 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11242,809,453 - 242,810,274 (+)NCBI
Celera1233,136,652 - 233,177,516 (+)NCBICelera
Cytogenetic Map1q53NCBI
Lgi1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955507267,892 - 305,026 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955507268,032 - 304,949 (+)NCBIChiLan1.0ChiLan1.0
LGI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28105,797,941 - 105,838,409 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110105,803,256 - 105,843,724 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01090,506,131 - 90,546,582 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11094,016,703 - 94,056,820 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1094,016,703 - 94,056,820 (+)Ensemblpanpan1.1panPan2
LGI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1287,966,485 - 8,005,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl287,966,593 - 8,012,313 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha288,142,279 - 8,181,152 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0288,226,366 - 8,265,262 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl288,225,835 - 8,272,347 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1287,945,864 - 7,984,726 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0287,975,424 - 8,014,295 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0288,145,234 - 8,184,124 (+)NCBIUU_Cfam_GSD_1.0
LGI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14105,219,896 - 105,256,648 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114105,219,901 - 105,251,423 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214114,951,215 - 114,982,754 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LGI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1986,993,964 - 87,033,725 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl986,994,307 - 87,035,807 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604847,769,144 - 47,809,266 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lgi1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247375,024,414 - 5,060,329 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247375,024,691 - 5,060,248 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000016100   ⟹   ENSSTOP00000014412
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366011,242,391 - 1,275,513 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000032075   ⟹   ENSSTOP00000026343
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366011,239,771 - 1,275,850 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000034170   ⟹   ENSSTOP00000024571
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366011,242,391 - 1,275,513 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000040660   ⟹   ENSSTOP00000032171
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366011,242,022 - 1,275,842 (-)Ensembl
RefSeq Acc Id: XM_005333720   ⟹   XP_005333777
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721339,607,174 - 39,643,265 (-)NCBI
SpeTri2.0NW_0049366011,242,022 - 1,275,842 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333777 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014412.3
  ENSSTOP00000024571.1
  ENSSTOP00000026343.1
  ENSSTOP00000032171.1
GenBank Protein KAG3264475 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005333777   ⟸   XM_005333720
- UniProtKB: A0A287CYJ6 (UniProtKB/TrEMBL),   A0A287CTF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000026343   ⟸   ENSSTOT00000032075
RefSeq Acc Id: ENSSTOP00000032171   ⟸   ENSSTOT00000040660
RefSeq Acc Id: ENSSTOP00000024571   ⟸   ENSSTOT00000034170
RefSeq Acc Id: ENSSTOP00000014412   ⟸   ENSSTOT00000016100
Protein Domains
LRRCT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016098 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016100.3 UniProtKB/TrEMBL
  ENSSTOT00000032075.1 UniProtKB/TrEMBL
  ENSSTOT00000034170.1 UniProtKB/TrEMBL
  ENSSTOT00000040660.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  EAR UniProtKB/TrEMBL
  EPTP UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene Lgi1 ENTREZGENE
PANTHER LEUCINE-RICH GLIOMA-INACTIVATED PROTEIN 1 UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam EPTP UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PROSITE EAR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A287CTF6 ENTREZGENE, UniProtKB/TrEMBL
  A0A287CYJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DF31_ICTTR UniProtKB/TrEMBL
  I3MQX4_ICTTR UniProtKB/TrEMBL