Nap1l5 (nucleosome assembly protein 1 like 5) - Rat Genome Database

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Gene: Nap1l5 (nucleosome assembly protein 1 like 5) Ictidomys tridecemlineatus
Analyze
Symbol: Nap1l5
Name: nucleosome assembly protein 1 like 5
RGD ID: 12454811
Description: ENCODES a protein that exhibits chromatin binding (inferred); histone binding (inferred); INVOLVED IN nucleosome assembly (inferred); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN chromatin (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nucleosome assembly protein 1-like 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530129,412,191 - 29,414,196 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366851,142,826 - 1,143,401 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366851,142,051 - 1,143,536 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nap1l5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530129,412,191 - 29,414,196 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366851,142,826 - 1,143,401 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366851,142,051 - 1,143,536 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAP1L5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38488,695,913 - 88,697,829 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl488,695,913 - 88,697,829 (-)EnsemblGRCh38hg38GRCh38
GRCh37489,617,064 - 89,618,980 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36489,836,090 - 89,838,003 (-)NCBINCBI36Build 36hg18NCBI36
Build 34489,974,244 - 89,976,158NCBI
Celera486,913,019 - 86,914,976 (-)NCBICelera
Cytogenetic Map4q22.1NCBI
HuRef485,368,983 - 85,370,940 (-)NCBIHuRef
CHM1_1489,593,537 - 89,595,494 (-)NCBICHM1_1
T2T-CHM13v2.0492,027,551 - 92,029,467 (-)NCBIT2T-CHM13v2.0
Nap1l5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39658,882,218 - 58,884,111 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl658,882,218 - 58,884,061 (-)EnsemblGRCm39 Ensembl
GRCm38658,905,233 - 58,907,126 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl658,905,233 - 58,907,076 (-)EnsemblGRCm38mm10GRCm38
MGSCv37658,855,227 - 58,857,120 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36658,834,812 - 58,836,643 (-)NCBIMGSCv36mm8
Celera661,059,719 - 61,061,612 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map627.9NCBI
Nap1l5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8489,352,834 - 89,354,704 (-)NCBIGRCr8
mRatBN7.2488,022,670 - 88,024,988 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl488,022,569 - 88,024,654 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx493,238,048 - 93,239,915 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0489,013,364 - 89,015,231 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0487,382,414 - 87,384,281 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0489,149,314 - 89,152,511 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl489,149,317 - 89,151,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04153,970,370 - 153,972,262 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4487,796,429 - 87,798,296 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera482,782,974 - 82,784,841 (-)NCBICelera
Cytogenetic Map4q24NCBI
Nap1l5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547411,743,565 - 11,745,311 (+)NCBIChiLan1.0ChiLan1.0
NAP1L5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2386,699,504 - 86,703,281 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1486,962,015 - 86,964,606 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0480,985,470 - 80,987,440 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1491,707,801 - 91,710,114 (-)NCBIpanpan1.1PanPan1.1panPan2
NAP1L5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13211,956,795 - 11,958,754 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3211,958,122 - 11,958,658 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3229,996,042 - 29,998,003 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03212,010,215 - 12,012,176 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3212,011,542 - 12,012,078 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13212,097,441 - 12,099,402 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03211,917,918 - 11,919,884 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03227,996,984 - 27,998,948 (+)NCBIUU_Cfam_GSD_1.0
NAP1L5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8130,364,566 - 130,365,464 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18130,364,566 - 130,365,464 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28139,774,316 - 139,775,215 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NAP1L5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1737,055,286 - 37,057,649 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl737,056,569 - 37,057,117 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603715,807,485 - 15,809,793 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nap1l5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475716,372,499 - 16,372,994 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475716,371,276 - 16,373,098 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000028982   ⟹   ENSSTOP00000017473
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366851,142,826 - 1,143,401 (-)Ensembl
RefSeq Acc Id: XM_005337526   ⟹   XP_005337583
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530129,412,191 - 29,414,196 (+)NCBI
SpeTri2.0NW_0049366851,142,051 - 1,143,536 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337583 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017473.2
GenBank Protein KAG3275962 (Get FASTA)   NCBI Sequence Viewer  
  KAG3275963 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005337583   ⟸   XM_005337526
- UniProtKB: I3MZC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000017473   ⟸   ENSSTOT00000028982


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023534 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028982.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1500 UniProtKB/TrEMBL
InterPro NAP-like_sf UniProtKB/TrEMBL
  NAP_family UniProtKB/TrEMBL
NCBI Gene Nap1l5 ENTREZGENE
PANTHER NUCLEOSOME ASSEMBLY PROTEIN 1-LIKE 2 UniProtKB/TrEMBL
  PTHR11875 UniProtKB/TrEMBL
Pfam NAP UniProtKB/TrEMBL
Superfamily-SCOP SSF143113 UniProtKB/TrEMBL
UniProt I3MZC7 ENTREZGENE, UniProtKB/TrEMBL