Lrrc15 (leucine rich repeat containing 15) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Lrrc15 (leucine rich repeat containing 15) Ictidomys tridecemlineatus
Analyze
Symbol: Lrrc15
Name: leucine rich repeat containing 15
RGD ID: 12454083
Description: ENCODES a protein that exhibits collagen binding (ortholog); fibronectin binding (ortholog); laminin binding (ortholog); INVOLVED IN negative regulation of protein localization to plasma membrane (ortholog); positive regulation of cell migration (ortholog); receptor-mediated virion attachment to host cell (ortholog); FOUND IN cell surface (ortholog); collagen-containing extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: leucine rich repeat containing 15, transcript variant X1; leucine rich repeat containing 15, transcript variant X2; leucine-rich repeat-containing protein 15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602123,802,384 - 123,808,008 (-)NCBI
SpeTri2.0NW_004936711441,804 - 443,615 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Lrrc15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602123,802,384 - 123,808,008 (-)NCBI
SpeTri2.0NW_004936711441,804 - 443,615 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRC15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3194,355,249 - 194,369,743 (-)EnsemblGRCh38hg38GRCh38
GRCh383194,355,249 - 194,369,743 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373194,075,978 - 194,090,472 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363195,557,273 - 195,571,761 (-)NCBINCBI36hg18NCBI36
Build 343195,557,280 - 195,571,769NCBI
Celera3192,490,979 - 192,505,408 (-)NCBI
Cytogenetic Map3q29NCBI
HuRef3191,455,388 - 191,469,818 (-)NCBIHuRef
CHM1_13194,038,840 - 194,053,338 (-)NCBICHM1_1
Lrrc15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391630,088,120 - 30,102,072 (-)NCBIGRCm39mm39
GRCm39 Ensembl1630,088,120 - 30,102,074 (-)Ensembl
GRCm381630,269,302 - 30,283,254 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1630,269,302 - 30,283,256 (-)EnsemblGRCm38mm10GRCm38
MGSCv371630,269,388 - 30,283,340 (-)NCBIGRCm37mm9NCBIm37
MGSCv361630,189,051 - 30,202,972 (-)NCBImm8
Celera1630,776,217 - 30,790,244 (-)NCBICelera
Cytogenetic Map16B2NCBI
Lrrc15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21170,469,775 - 70,484,268 (+)NCBI
Rnor_6.0 Ensembl1174,050,166 - 74,051,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01174,040,846 - 74,052,179 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01177,102,016 - 77,113,020 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41172,377,090 - 72,378,826 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11172,434,678 - 72,436,415 (+)NCBI
Celera1169,452,040 - 69,453,776 (+)NCBICelera
Cytogenetic Map11q22NCBI
Lrrc15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542014,407,926 - 14,409,656 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542014,401,080 - 14,410,277 (+)NCBIChiLan1.0ChiLan1.0
LRRC15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13201,968,851 - 201,980,636 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3201,970,221 - 201,974,286 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03191,655,181 - 191,666,727 (-)NCBIMhudiblu_PPA_v0panPan3
LRRC15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13331,332,502 - 31,345,895 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3331,332,496 - 31,342,583 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3331,364,113 - 31,377,495 (+)NCBI
ROS_Cfam_1.03331,592,490 - 31,605,874 (+)NCBI
UMICH_Zoey_3.13331,389,449 - 31,402,834 (+)NCBI
UNSW_CanFamBas_1.03331,418,407 - 31,431,789 (+)NCBI
UU_Cfam_GSD_1.03332,105,985 - 32,118,522 (-)NCBI
LRRC15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13131,343,940 - 131,345,685 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113131,339,778 - 131,354,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213140,841,378 - 140,849,189 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRC15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11588,451,090 - 88,465,241 (-)NCBI
ChlSab1.1 Ensembl1588,455,015 - 88,456,760 (-)Ensembl
Vero_WHO_p1.0NW_02366604162,137,819 - 62,152,046 (-)NCBI
Lrrc15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473063,400,463 - 63,409,006 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005338413   ⟹   XP_005338470
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936711441,804 - 443,615 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005338414   ⟹   XP_005338471
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936711441,804 - 443,615 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040270229   ⟹   XP_040126163
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602123,802,384 - 123,808,008 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040126163 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3271229 (Get FASTA)   NCBI Sequence Viewer  
  KAG3271230 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005338470   ⟸   XM_005338413
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005338471   ⟸   XM_005338414
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040126163   ⟸   XM_040270229


Additional Information

Database Acc Id Source(s)
NCBI Gene Lrrc15 ENTREZGENE