Gopc (golgi associated PDZ and coiled-coil motif containing) - Rat Genome Database

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Gene: Gopc (golgi associated PDZ and coiled-coil motif containing) Ictidomys tridecemlineatus
Analyze
Symbol: Gopc
Name: golgi associated PDZ and coiled-coil motif containing
RGD ID: 12453951
Description: ENCODES a protein that exhibits frizzled binding (ortholog); GTPase regulator activity (ortholog); identical protein binding (ortholog); INVOLVED IN cytoplasmic sequestering of CFTR protein (ortholog); negative regulation of anion channel activity (ortholog); negative regulation of protein localization to cell surface (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); body dysmorphic disorder (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: golgi associated PDZ and coiled-coil motif containing, transcript variant X1; golgi associated PDZ and coiled-coil motif containing, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946108,509,927 - 108,548,999 (-)NCBI
SpeTri2.0NW_004936658614,711 - 655,874 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Gopc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946108,509,927 - 108,548,999 (-)NCBI
SpeTri2.0NW_004936658614,711 - 655,874 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOPC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6117,560,269 - 117,602,542 (-)EnsemblGRCh38hg38GRCh38
GRCh386117,560,269 - 117,602,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376117,881,432 - 117,923,674 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366117,988,125 - 118,030,374 (-)NCBINCBI36hg18NCBI36
Build 346117,991,109 - 118,030,220NCBI
Celera6118,624,329 - 118,666,606 (-)NCBI
Cytogenetic Map6q22.1NCBI
HuRef6115,462,063 - 115,504,349 (-)NCBIHuRef
CHM1_16118,145,375 - 118,187,647 (-)NCBICHM1_1
Gopc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391052,213,120 - 52,258,220 (-)NCBIGRCm39mm39
GRCm39 Ensembl1052,211,946 - 52,258,220 (-)Ensembl
GRCm381052,337,024 - 52,382,124 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1052,335,850 - 52,382,124 (-)EnsemblGRCm38mm10GRCm38
MGSCv371052,056,887 - 52,101,881 (-)NCBIGRCm37mm9NCBIm37
MGSCv361052,025,496 - 52,070,490 (-)NCBImm8
Celera1053,174,463 - 53,219,811 (-)NCBICelera
Cytogenetic Map10B3NCBI
Gopc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22031,727,617 - 31,776,928 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2031,727,620 - 31,776,903 (-)Ensembl
Rnor_6.02033,471,355 - 33,521,281 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2033,471,351 - 33,521,311 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02035,250,254 - 35,299,353 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42031,055,284 - 31,105,701 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12031,071,736 - 31,119,338 (-)NCBI
Celera2033,125,468 - 33,174,815 (-)NCBICelera
Cytogenetic Map20q11NCBI
Gopc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955436743,616 - 777,878 (-)NCBIChiLan1.0ChiLan1.0
GOPC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16119,509,936 - 119,552,010 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6119,509,936 - 119,552,010 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06115,368,682 - 115,411,140 (-)NCBIMhudiblu_PPA_v0panPan3
GOPC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1157,790,118 - 57,829,022 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl157,792,647 - 57,828,820 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha158,589,110 - 58,629,156 (-)NCBI
ROS_Cfam_1.0157,970,112 - 58,010,164 (-)NCBI
UMICH_Zoey_3.1157,871,500 - 57,911,541 (-)NCBI
UNSW_CanFamBas_1.0157,712,463 - 57,752,507 (-)NCBI
UU_Cfam_GSD_1.0158,343,632 - 58,383,890 (-)NCBI
GOPC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl144,239,383 - 44,287,198 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1144,239,364 - 44,285,886 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2149,584,131 - 49,631,566 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOPC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11356,229,780 - 56,270,829 (+)NCBI
ChlSab1.1 Ensembl1356,229,810 - 56,272,830 (+)Ensembl
Vero_WHO_p1.0NW_02366604028,567,387 - 28,608,428 (+)NCBI
Gopc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479812,188,460 - 12,216,542 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005336087   ⟹   XP_005336144
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946108,509,927 - 108,548,974 (-)NCBI
SpeTri2.0NW_004936658614,711 - 655,874 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005336088   ⟹   XP_005336145
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946108,509,927 - 108,548,999 (-)NCBI
SpeTri2.0NW_004936658614,711 - 655,874 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005336144 (Get FASTA)   NCBI Sequence Viewer  
  XP_005336145 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3290129 (Get FASTA)   NCBI Sequence Viewer  
  KAG3290130 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005336145   ⟸   XM_005336088
- Peptide Label: isoform X2
- UniProtKB: I3NDH5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005336144   ⟸   XM_005336087
- Peptide Label: isoform X1
- UniProtKB: I3M8E3 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006712 ENTREZGENE
Ensembl Protein ENSSTOP00000006000 ENTREZGENE
  ENSSTOP00000022422 ENTREZGENE
NCBI Gene Gopc ENTREZGENE
UniProt I3M8E3 ENTREZGENE
  I3NDH5 ENTREZGENE