Emb (embigin) - Rat Genome Database

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Gene: Emb (embigin) Ictidomys tridecemlineatus
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Symbol: Emb
Name: embigin
RGD ID: 12453138
Description: INVOLVED IN cell adhesion (ortholog); plasma membrane lactate transport (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); Experimental Liver Cirrhosis (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN integral component of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213207,717,925 - 207,770,608 (+)NCBI
SpeTri2.0NW_00493648016,654,388 - 16,705,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Emb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213207,717,925 - 207,770,608 (+)NCBI
SpeTri2.0NW_00493648016,654,388 - 16,705,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl550,396,192 - 50,443,248 (-)EnsemblGRCh38hg38GRCh38
GRCh38550,396,192 - 50,443,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37549,692,026 - 49,737,122 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36549,730,230 - 49,772,958 (-)NCBINCBI36hg18NCBI36
Build 34549,730,233 - 49,772,958NCBI
Celera546,639,392 - 46,684,611 (-)NCBI
Cytogenetic Map5q11.1NCBI
HuRef546,656,951 - 46,701,888 (-)NCBIHuRef
CHM1_1549,694,085 - 49,739,302 (-)NCBICHM1_1
Emb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913117,357,109 - 117,410,951 (+)NCBIGRCm39mm39
GRCm39 Ensembl13117,345,072 - 117,410,951 (+)Ensembl
GRCm3813117,220,573 - 117,274,415 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13117,208,536 - 117,274,415 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713118,009,380 - 118,063,222 (+)NCBIGRCm37mm9NCBIm37
MGSCv3613118,339,913 - 118,393,379 (+)NCBImm8
Celera13121,622,857 - 121,676,167 (+)NCBICelera
Cytogenetic Map13D2.3NCBI
Emb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2249,070,509 - 49,125,042 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl249,069,087 - 49,125,050 (+)Ensembl
Rnor_6.0249,682,763 - 49,733,475 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl249,682,754 - 49,732,253 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0268,054,533 - 68,107,895 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4249,098,743 - 49,155,221 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1249,026,975 - 49,083,453 (+)NCBI
Celera244,782,309 - 44,836,695 (+)NCBICelera
Cytogenetic Map2q15NCBI
Emb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544616,716,677 - 16,753,841 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544616,716,677 - 16,757,031 (+)NCBIChiLan1.0ChiLan1.0
EMB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1565,203,820 - 65,250,260 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl565,204,168 - 65,247,182 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0563,590,589 - 63,635,167 (+)NCBIMhudiblu_PPA_v0panPan3
EMB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1464,409,497 - 64,460,215 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl464,409,589 - 64,459,376 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha464,169,708 - 64,219,478 (+)NCBI
ROS_Cfam_1.0464,907,837 - 64,957,630 (+)NCBI
UMICH_Zoey_3.1464,672,241 - 64,720,515 (+)NCBI
UNSW_CanFamBas_1.0464,795,117 - 64,843,296 (+)NCBI
UU_Cfam_GSD_1.0465,328,657 - 65,378,436 (+)NCBI
EMB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1630,121,054 - 30,287,793 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11630,121,072 - 30,170,495 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21631,718,891 - 31,763,638 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EMB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1446,678,490 - 46,730,944 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl446,681,540 - 46,730,472 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660824,484,344 - 4,536,366 (+)NCBIVero_WHO_p1.0
Emb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247599,085,231 - 9,157,643 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005319653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005319653   ⟹   XP_005319710
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213207,717,925 - 207,770,608 (+)NCBI
SpeTri2.0NW_00493648016,654,388 - 16,705,112 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319710 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3266708 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005319710   ⟸   XM_005319653
- UniProtKB: I3MZF2 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026143 ENTREZGENE
Ensembl Protein ENSSTOP00000017498 ENTREZGENE
NCBI Gene Emb ENTREZGENE
UniProt I3MZF2 ENTREZGENE