Fut9 (fucosyltransferase 9) - Rat Genome Database

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Gene: Fut9 (fucosyltransferase 9) Ictidomys tridecemlineatus
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Symbol: Fut9
Name: fucosyltransferase 9
RGD ID: 12452091
Description: ENCODES a protein that exhibits 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity (inferred); alpha-(1->3)-fucosyltransferase activity (inferred); fucosyltransferase activity (inferred); INVOLVED IN N-glycan fucosylation (ortholog); nervous system development (ortholog); oligosaccharide biosynthetic process (ortholog); FOUND IN Golgi apparatus (inferred); Golgi cisterna membrane (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9; alpha-(1,3)-fucosyltransferase 9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494689,115,122 - 89,310,993 (+)NCBI
SpeTri2.0NW_0049366991,428,131 - 1,612,294 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Fut9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494689,115,122 - 89,310,993 (+)NCBI
SpeTri2.0NW_0049366991,428,131 - 1,612,294 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FUT9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38696,015,974 - 96,215,612 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl696,015,974 - 96,215,612 (+)EnsemblGRCh38hg38GRCh38
GRCh37696,463,850 - 96,663,488 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36696,570,566 - 96,770,209 (+)NCBINCBI36hg18NCBI36
Build 34696,570,589 - 96,760,477NCBI
Celera697,104,994 - 97,305,565 (+)NCBI
Cytogenetic Map6q16.1NCBI
HuRef693,896,758 - 94,097,599 (+)NCBIHuRef
CHM1_1696,725,919 - 96,925,506 (+)NCBICHM1_1
T2T-CHM13v2.0697,186,913 - 97,387,800 (+)NCBI
Fut9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39425,609,333 - 25,800,003 (-)NCBIGRCm39mm39
GRCm39 Ensembl425,609,332 - 25,800,244 (-)Ensembl
GRCm38425,609,333 - 25,800,003 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl425,609,332 - 25,800,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv37425,536,480 - 25,727,150 (-)NCBIGRCm37mm9NCBIm37
MGSCv36425,699,963 - 25,890,633 (-)NCBImm8
Celera425,322,237 - 25,513,151 (-)NCBICelera
Cytogenetic Map4A3NCBI
cM Map410.59NCBI
Fut9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2539,351,815 - 39,565,256 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl539,351,819 - 39,565,130 (-)Ensembl
Rnor_6.0540,032,855 - 40,237,591 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl540,032,855 - 40,237,591 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0544,751,837 - 44,863,523 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0544,660,497 - 44,662,321 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4540,716,822 - 40,934,545 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1540,717,000 - 40,934,724 (-)NCBI
Celera538,275,370 - 38,475,910 (-)NCBICelera
Cytogenetic Map5q21NCBI
Fut9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541122,203,809 - 22,318,518 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541122,112,230 - 22,318,518 (+)NCBIChiLan1.0ChiLan1.0
FUT9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1697,744,014 - 97,935,960 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl697,932,631 - 97,933,710 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0693,857,269 - 94,048,555 (+)NCBIMhudiblu_PPA_v0panPan3
FUT9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11254,581,280 - 54,784,072 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1254,771,426 - 54,772,505 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1254,582,005 - 54,583,084 (+)NCBI
ROS_Cfam_1.01255,481,655 - 55,603,595 (+)NCBI
ROS_Cfam_1.0 Ensembl1255,590,962 - 55,592,041 (+)Ensembl
UMICH_Zoey_3.11254,926,591 - 54,927,670 (+)NCBI
UNSW_CanFamBas_1.01254,788,110 - 54,789,189 (+)NCBI
UU_Cfam_GSD_1.01255,035,177 - 55,036,256 (+)NCBI
FUT9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.2171,777,134 - 71,790,121 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FUT9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11320,966,232 - 21,165,638 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1321,162,381 - 21,163,457 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040197,188,369 - 197,382,874 (+)NCBIVero_WHO_p1.0
Fut9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248109,154,818 - 9,217,177 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248109,152,805 - 9,403,382 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005338011   ⟹   XP_005338068
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494689,115,261 - 89,310,993 (+)NCBI
SpeTri2.0NW_0049366991,428,131 - 1,612,294 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040283111   ⟹   XP_040139045
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494689,115,662 - 89,310,993 (+)NCBI
RefSeq Acc Id: XM_040283112   ⟹   XP_040139046
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494689,115,662 - 89,310,993 (+)NCBI
RefSeq Acc Id: XM_040283114   ⟹   XP_040139048
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494689,115,661 - 89,310,993 (+)NCBI
RefSeq Acc Id: XR_005732908
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494689,115,123 - 89,276,940 (+)NCBI
RefSeq Acc Id: XR_005732909
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494689,115,122 - 89,268,238 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005338068 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139045 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139046 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139048 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3289954 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005338068   ⟸   XM_005338011
- UniProtKB: I3LWA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040139048   ⟸   XM_040283114
RefSeq Acc Id: XP_040139045   ⟸   XM_040283111
RefSeq Acc Id: XP_040139046   ⟸   XM_040283112
Protein Domains
Glyco_tran_10_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000275 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000000245 ENTREZGENE
  ENSSTOP00000000245.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000275.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.11660 UniProtKB/TrEMBL
InterPro Glyco_tran_10_N UniProtKB/TrEMBL
  Glyco_trans_10 UniProtKB/TrEMBL
  GT10-like_C_sf UniProtKB/TrEMBL
NCBI Gene Fut9 ENTREZGENE
PANTHER PTHR11929 UniProtKB/TrEMBL
Pfam Glyco_tran_10_N UniProtKB/TrEMBL
  Glyco_transf_10 UniProtKB/TrEMBL
UniProt I3LWA4 ENTREZGENE, UniProtKB/TrEMBL