Nr4a3 (nuclear receptor subfamily 4 group A member 3) - Rat Genome Database

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Gene: Nr4a3 (nuclear receptor subfamily 4 group A member 3) Ictidomys tridecemlineatus
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Symbol: Nr4a3
Name: nuclear receptor subfamily 4 group A member 3
RGD ID: 12451226
Description: ENCODES a protein that exhibits cAMP response element binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN adult behavior (ortholog); animal organ regeneration (ortholog); axon guidance (ortholog); ASSOCIATED WITH extraskeletal myxoid chondrosarcoma (ortholog); Hypercholesterolemia (ortholog); Insulin Resistance (ortholog); FOUND IN transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947171,704,489 - 171,743,204 (+)NCBI
SpeTri2.0NW_0049365248,252,321 - 8,290,747 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adult behavior  (ISO)
animal organ regeneration  (ISO)
axon guidance  (ISO)
cellular respiration  (ISO)
cellular response to catecholamine stimulus  (ISO)
cellular response to corticotropin-releasing hormone stimulus  (ISO)
cellular response to leptin stimulus  (ISO)
common myeloid progenitor cell proliferation  (ISO)
energy homeostasis  (ISO)
fat cell differentiation  (ISO)
gastrulation  (ISO)
hippocampus development  (ISO)
inner ear morphogenesis  (ISO)
mast cell degranulation  (ISO)
mesoderm formation  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of hydrogen peroxide-induced neuron death  (ISO)
negative regulation of neuron apoptotic process  (ISO)
negative regulation of oxidative stress-induced neuron death  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
neuromuscular process controlling balance  (ISO)
platelet-derived growth factor receptor signaling pathway  (ISO)
positive regulation of cardiac muscle hypertrophy  (ISO)
positive regulation of cell cycle  (ISO)
positive regulation of epithelial cell proliferation  (ISO)
positive regulation of fatty acid oxidation  (ISO)
positive regulation of feeding behavior  (ISO)
positive regulation of glucose transmembrane transport  (ISO)
positive regulation of leukocyte apoptotic process  (ISO)
positive regulation of mast cell activation by Fc-epsilon receptor signaling pathway  (ISO)
positive regulation of mast cell cytokine production  (ISO)
positive regulation of monocyte aggregation  (ISO)
positive regulation of smooth muscle cell proliferation  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of transcription, DNA-templated  (ISO)
positive regulation of vascular associated smooth muscle cell migration  (ISO)
positive regulation of vascular associated smooth muscle cell proliferation  (ISO)
pyruvate oxidation  (ISO)
regulation of smooth muscle cell proliferation  (ISO)
regulation of type B pancreatic cell proliferation  (ISO)
response to hydrogen peroxide  (ISO)
response to peptide hormone  (ISO)
semicircular canal morphogenesis  (ISO)
vestibular reflex  (ISO)

Cellular Component

References

Genomics

Comparative Map Data
Nr4a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947171,704,489 - 171,743,204 (+)NCBI
SpeTri2.0NW_0049365248,252,321 - 8,290,747 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR4A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl999,821,855 - 99,866,891 (+)EnsemblGRCh38hg38GRCh38
GRCh38999,821,885 - 99,866,893 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379102,584,167 - 102,629,173 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369101,623,958 - 101,668,994 (+)NCBINCBI36hg18NCBI36
Build 34999,668,563 - 99,708,728NCBI
Celera973,097,532 - 73,142,572 (+)NCBI
Cytogenetic Map9q31.1NCBI
HuRef972,183,339 - 72,228,487 (+)NCBIHuRef
CHM1_19102,730,616 - 102,775,645 (+)NCBICHM1_1
Nr4a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39448,045,098 - 48,086,446 (+)NCBIGRCm39mm39
GRCm39 Ensembl448,045,153 - 48,086,447 (+)Ensembl
GRCm38448,045,078 - 48,086,447 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl448,045,153 - 48,086,447 (+)EnsemblGRCm38mm10GRCm38
MGSCv37448,064,120 - 48,096,224 (+)NCBIGRCm37mm9NCBIm37
MGSCv36448,072,348 - 48,104,452 (+)NCBImm8
Celera448,073,263 - 48,105,416 (+)NCBICelera
Cytogenetic Map4B1NCBI
Nr4a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2562,361,588 - 62,401,489 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl562,361,822 - 62,402,733 (+)Ensembl
Rnor_6.0563,781,801 - 63,822,890 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl563,781,801 - 63,821,637 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0568,298,772 - 68,339,861 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4564,713,468 - 64,753,311 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1564,718,506 - 64,758,343 (+)NCBI
Celera565,193,786 - 65,233,628 (-)NCBICelera
Cytogenetic Map5q22NCBI
Nr4a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541925,779,178 - 25,818,706 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541925,779,368 - 25,817,445 (-)NCBIChiLan1.0ChiLan1.0
NR4A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1999,028,151 - 99,049,949 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0970,907,056 - 70,950,221 (+)NCBIMhudiblu_PPA_v0panPan3
NR4A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11156,806,506 - 56,846,997 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1156,812,804 - 56,847,689 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1155,238,295 - 55,278,535 (+)NCBI
ROS_Cfam_1.01157,915,798 - 57,956,020 (+)NCBI
UMICH_Zoey_3.11156,420,068 - 56,460,272 (+)NCBI
UNSW_CanFamBas_1.01156,444,924 - 56,485,181 (+)NCBI
UU_Cfam_GSD_1.01157,144,349 - 57,184,553 (+)NCBI
NR4A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1241,569,905 - 241,611,734 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11241,569,867 - 241,611,735 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21269,813,286 - 269,852,707 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NR4A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11239,568,085 - 39,611,704 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1239,567,852 - 39,606,837 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660352,937,605 - 2,981,244 (+)NCBIVero_WHO_p1.0
Nr4a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248251,098,915 - 1,141,373 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013359036   ⟹   XP_013214490
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947171,704,489 - 171,743,204 (+)NCBI
SpeTri2.0NW_0049365248,252,321 - 8,290,747 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040286094   ⟹   XP_040142028
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947171,706,795 - 171,743,204 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013214490 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142028 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3287594 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013214490   ⟸   XM_013359036
- UniProtKB: I3M4R9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040142028   ⟸   XM_040286094


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004723 ENTREZGENE
Ensembl Protein ENSSTOP00000004240 ENTREZGENE
NCBI Gene Nr4a3 ENTREZGENE
UniProt I3M4R9 ENTREZGENE