Tube1 (tubulin epsilon 1) - Rat Genome Database

Name: Tube1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Tube1 (tubulin epsilon 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Tube1

Name:

tubulin epsilon 1

RGD ID:

12451068

Description:

ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tubulin epsilon 1, transcript variant X1; tubulin epsilon 1, transcript variant X3; tubulin epsilon 1, transcript variant X4; tubulin epsilon 1, transcript variant X6; tubulin epsilon chain

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TUBE1 (tubulin epsilon 1)	NCBI	Ortholog
Mus musculus (house mouse):	Tube1 (tubulin, epsilon 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Tube1 (tubulin, epsilon 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tube1 (tubulin epsilon 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TUBE1 (tubulin epsilon 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TUBE1 (tubulin epsilon 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TUBE1 (tubulin epsilon 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TUBE1 (tubulin epsilon 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tube1 (tubulin epsilon 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	103,518,756 - 103,551,162 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936679	751,701 - 783,296 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Tube1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	103,518,756 - 103,551,162 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936679	751,701 - 783,296 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TUBE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	112,070,663 - 112,087,482 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	112,070,663 - 112,087,529 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	112,391,866 - 112,408,685 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	112,498,673 - 112,515,349 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	112,498,674 - 112,515,349	NCBI
Celera	6	113,133,162 - 113,150,058 (-)	NCBI		Celera
Cytogenetic Map	6	q21	NCBI
HuRef	6	109,966,689 - 109,983,618 (-)	NCBI		HuRef
CHM1_1	6	112,654,200 - 112,671,087 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	113,254,081 - 113,270,900 (-)	NCBI		T2T-CHM13v2.0

Tube1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	39,009,946 - 39,035,863 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	39,009,972 - 39,028,538 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	39,133,949 - 39,151,058 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	39,133,976 - 39,152,542 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	38,853,829 - 38,870,864 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	38,823,442 - 38,839,618 (+)	NCBI		MGSCv36	mm8
Celera	10	40,018,252 - 40,035,260 (+)	NCBI		Celera
Cytogenetic Map	10	B1	NCBI
cM Map	10	20.16	NCBI

Tube1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	44,105,405 - 44,124,947 (+)	NCBI		GRCr8
mRatBN7.2	20	42,552,390 - 42,570,324 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	42,552,437 - 42,570,314 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	44,301,332 - 44,319,212 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	43,960,540 - 43,978,422 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	44,691,131 - 44,711,392 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	44,220,823 - 44,238,830 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	44,220,840 - 44,238,830 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	45,947,839 - 45,965,854 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	43,280,097 - 43,298,415 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	43,303,212 - 43,320,224 (+)	NCBI
Celera	20	43,268,759 - 43,287,021 (+)	NCBI		Celera
Cytogenetic Map	20	q12	NCBI

Tube1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955526	4,484,128 - 4,501,709 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955526	4,484,867 - 4,519,603 (+)	NCBI	ChiLan1.0	ChiLan1.0

TUBE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	132,086,778 - 132,103,650 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	129,974,988 - 129,991,860 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	109,881,084 - 109,898,086 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	113,956,404 - 113,973,416 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	113,953,575 - 113,973,403 (-)	Ensembl	panpan1.1		panPan2

TUBE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	68,499,435 - 68,514,127 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	68,499,525 - 68,514,648 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	68,317,764 - 68,332,960 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	69,380,998 - 69,396,227 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	69,381,003 - 69,396,201 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	68,740,495 - 68,755,703 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	68,578,009 - 68,593,213 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	68,905,013 - 68,920,199 (-)	NCBI		UU_Cfam_GSD_1.0

TUBE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	78,018,433 - 78,048,406 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	78,018,113 - 78,048,466 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	87,688,125 - 87,717,319 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TUBE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	61,768,981 - 61,785,273 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	61,769,047 - 61,784,525 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	34,104,774 - 34,121,076 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tube1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004625007	18,003 - 47,592 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004625007	17,991 - 48,970 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005337421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021734630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021734631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021734632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040283229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002485337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002485338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005732942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005337421 ⟹ XP_005337478

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	103,535,732 - 103,551,152 (-)	NCBI
SpeTri2.0	NW_004936679	768,197 - 783,296 (-)	NCBI

Sequence:

show sequence

CAGCAGCGTGACTTACGGCTGCCCCCTGGTGAGGAGCGGTTGCGGACGAATGAGAATGCGAGAT
TGGGTTCGAAGGTGTCCCGGGCGGGCTACCTTCCAAAATGACCCAGTCGGTGGTCGTACAGGTT
GGCCAGTGCGGAAACCAGATCGGTTGTTGCTTCTGGGACCTGGCCCTGAGGGAGCACGCCGCGG
TCAACCAGAAAGGAATTTATGATGAGGCAATAAGCAGCTTCTTTAGAAATGTGGATACCAGAGT
GGTTGGTGGTGGTGGCAGCATTTCCAAGGGGAAGATACGTTCTTTGAAAGCACGAGCTGTCTTG
ATTGACATGGAAGAAGGGGTAGTGAATGAAATTCTTCAGGGACCATTGAGAGATGTATTTGATA
GCAAGCAGCTCATCACTGATATTTCTGGCTCAGGAAATAACTGGGCTGTGGGGCACAAAGTTTT
TGGCAGTCTTTACCAAGAACAGATTTTAGAAAAACTCAGAAAGTCGGCAGAGCACTGTGATTGT
TTGCAGTGTTTCTTTATAATACACTCCATGGGAGGAGGAACAGGATCTGGACTTGGTACATTTC
TTTTAAAGGTTCTTGAAGATGAATTCCCAGAAGTATACAGATTTGTGACTTCAGTTTATCCTTC
TGGTGAGGATGATGTCATAACTTCACCTTATAATAGCATCTTGGCAATGAAGGAACTTAATGAG
CATGCAGACTGTGTGTTGCCCATTGATAATCAATCTTTATTTGACATCATTAGCAAAATTGACC
TCATGGTGAATTCTGGAAAGTTGGGTAAAACCGTGAAGCCCAAGAGTCTGATTACTTCAAGTGC
TGGGACTTTTAAAAAGCAGCATAAGAGGCCCTTTGATGCAATGAACAACATTGTGGCAAATTTG
ATGCTTAACCTAACAAGCTCTTCAAGGTTTGAAGGATCCCTTAACATGGACATTAATGAAATCA
GCATGAATTTAGTTCCTTTTCCACAACTTCATTATCTTGTGTCAAGCCTAACACCTCTATATAC
ACTGGCAGACATTAACGTTCCTCCTCGGAGGTTGGATCAGATGTTTTCAGATGCCTTTAGTAAA
GATTACCAACTAATTCAAGCAGATCCCAAACATAGCCTATATCTCGCCTGCGCCCTCATGGTTA
GAGGAAATGTACAGATTTCAGATCTTCGCAGAAATATTGAAAGATTAAAACCTTCTCTACATTT
TGTCTCCTGGAATCAAGAAGGCTGGAAGACTAGCCTGTGTTCTGTACCACCTGTGGGCCATTCT
CATTCATTATTAGCTTTAGCAAATAACACATGTGTGAAGCCTACCTTTGTGGAACTGAGAGAGA
GATTCATGAGGCTCTACAAGAAAAAGGCTCACCTCCATCACTATCTACAGGTTGAAGGGATGGA
GGAGAGCTGTTTCACAGAAGCTGTGTCATCTTTGTCAGCTCTTATCCAGGAGTATAACCAACTA
GATGCCACAAAGAGCATGCCTGTGGAGGACTTCCCTAGGCTAAGAGTAGCTGTGTGAAAAAGAA
ACCAAGAAATATGATTGTCACTTTTTCCTAATTTCACATTTTTTTTTTAGCATTTTTGTGATTT
AGAAAATTCACTGTTTTTCATATCAGAGTATTGTCTAAAAAAGAGTGGTTTCTGTTTAATCACA
ATTCATTGATACCAGTGTGTGAAATTAGTAAATCCCATTACCTTCACTATAAGCAGTTTATAAA
ATAGAGAGAACAGAGTTCTTTAACAATTTGCTTTTGCTTTATTTATTGCCTAATACTTGTACAC
CAACAATCATGTCTTTGGTAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_021734631 ⟹ XP_021590306

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	103,518,756 - 103,551,160 (-)	NCBI
SpeTri2.0	NW_004936679	751,721 - 783,296 (-)	NCBI

Sequence:

show sequence

CAGCAGCGTGACTTACGGCTGCCCCCTGGTGAGGAGCGGTTGCGGACGAATGAGAATGCGAGAT
TGGGTTCGAAGGTGTCCCGGGCGGGCTACCTTCCAAAATGACCCAGTCGGTGGTCGTACAGGTT
GGCCAGTGCGGAAACCAGATCGGTTGTTGCTTCTGGGACCTGGCCCTGAGGGAGCACGCCGCGG
TCAACCAGAAAGGAATTTATGATGAGGCAATAAGCAGCTTCTTTAGAAATGTGGATACCAGAGT
GGTTGGTGGTGGTGGCAGCATTTCCAAGGGGAAGATACGTTCTTTGAAAGCACGAGCTGTCTTG
ATTGACATGGAAGAAGGGGTAGTGAATGAAATTCTTCAGGGACCATTGAGAGATGTATTTGATA
GCAAGCAGCTCATCACTGATATTTCTGGCTCAGGAAATAACTGGGCTGTGGGGCACAAAGTTTT
TGGCAGTCTTTACCAAGAACAGATTTTAGAAAAACTCAGAAAGTCGGCAGAGCACTGTGATTGT
TTGCAGTGTTTCTTTATAATACACTCCATGGGAGGAGGAACAGGATCTGGACTTGGTACATTTC
TTTTAAAGGTTCTTGAAGATGAATTCCCAGAAGTATACAGATTTGTGACTTCAGTTTATCCTTC
TGGTGAGGATGATGTCATAACTTCACCTTATAATAGCATCTTGGCAATGAAGGAACTTAATGAG
CATGCAGACTGTGTGTTGCCCATTGATAATCAATCTTTATTTGACATCATTAGCAAAATTGACC
TCATGGTGAATTCTGGAAAGTTGGGTAAAACCGTGAAGCCCAAGAGTCTGATTACTTCAAGTGC
TGGGACTTTTAAAAAGCAGCATAAGAGGCCCTTTGATGCAATGAACAACATTGTGGCAAATTTG
ATGCTTAACCTAACAAGCTCTTCAAGGTTTGAAGGATCCCTTAACATGGACATTAATGAAATCA
GCATGAATTTAGTTCCTTTTCCACAACTTCATTATCTTGTGTCAAGCCTAACACCTCTATATAC
ACTGGCAGACATTAACGTTCCTCCTCGGAGGTTGGATCAGATGTTTTCAGATGCCTTTAGTAAA
GATTACCAACTAATTCAAGCAGATCCCAAACATAGCCTATATCTCGCCTGCGCCCTCATGGTTA
GAGGAAATGTACAGATTTCAGATCTTCGCAGAAATATTGAAAGATTAAAACCTTCTCTACATTT
TGTCTCCTGGAATCAAGAAGGCTGGAAGACTAGCCTGTGTTCTGTACCACCTGTGGGCCATTCT
CATTCATTATTAGCTTTAGCAAATAACACATGTGTGAAGCCTACCTTTGTGGAACTGAGAGAGA
GATTCATGAGGCTCTACAAGAAAAAGACACTTTTTGATTGCTTTCAAAAACAAAATCTGAAGAC
AACAAGTCATTAGGATAATGCAAGAGGAAGGTTGTGCTTCAAAAACAGATCTGAGCTTTAGCCA
AGCAGTGATGTTAGAAGACTTCCTATCATTTGCTCTTCTAGCCTCAATCCTCTTCTGTGAAATG
GGATTGATAATATGCACCTGGTAAGGTTGCTTTGCAGATTAGGATGGGTAAAGTGCCTAGCACG
GTGCTTGGCACACAGTTGATGTTCAATAAATGGTAAGTATATCATCTGACTCTTTAAAAATTCA
CAACAGCAAAGAAGTGAAACACAAAATAATACTTTCTTACTACCCTTAGCATAACACATTTCTG
TGTTTTTTAAATTTTGTATCCTGTACTCATCTCTCCATATTGGAATACTTGCTATTTAGGAACA
TGTAGCAGCTCAGTCCAGAAAGTGGAATAGGAGAGGGACATCTGTGTCCCACCCCCACTGGGGA
AGTGTTCCCCTAGGGGACAATGAGCAAGACCTAGGCCACTGACATTATCATCATGATATTTTTG
AAGTCTTAAATCCCTCAATACTAAGTATAACAACTTGCTTTCCAACATATATCTACTGCCCACT
GCTCAAATTGGCTATTAACTCAGACATTTCCATGTTTTCTAAATCACCAGAAGATTTCAAAAGC
TCTGTCTCCTGTGCCAACAACCTCAACTATGTAAATGAATCAATAAATAAGTCACCTTGTTTTA
ATCTTCTCATTAAAAAAAATACTAAGACAACGAATTGCTCATATTAAACTTCTCTTTGGTCTGT
TGCTTGAAATATTTCCAAGTCTCCATGGGCCGATTCCCTTTCACACACACAAACGTGAGAAACA
CATGGATTGAGAAAAGACAAACTAATAGAATATTTTAAAAATGTACATGTTTGTTCCAAAGTAC
TCCTTTCAAACAAGGACTGGCTTCACTGAAAAAAAAGTTGTTGCCAAAATCCATTTTCTAGGGG
CTCTTTGCACATTTTTTGCAAACAACCCTGGAAAGTTGAGCCCCAGCCTGGCAGTGTTCACTCC
ACTGTGGCCGCCAGCTCTGCCGTTGTCCCAGGGTCACAGTGCATGTTCAACTTGGATAAAATAT
ATAAAGTTGAGGGCTGTTTAAACATAGTGAAAGTAGACTTCAGTGCCTTAACCTGAAAGGGAGA
GGAGTTTCACATTTCTCTCATGAAGCTAATGCACTCAAACAGAACTTTACTTGGAGAGAAAAAT
GGCTCCCTATTTTCCCACTAGTAATTTTCCCCCATCTTCTTCCTTTTTTATTTTTAGCCTGAAG
AACTCGAAATGGCTAGAGTCTCTGGAAGGGAAAGAGGAAGGACTTACCTGT

hide sequence

RefSeq Acc Id:

XM_040283229 ⟹ XP_040139163

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	103,535,732 - 103,551,037 (-)	NCBI

RefSeq Acc Id:

XR_002485337

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	103,518,756 - 103,551,162 (-)	NCBI
SpeTri2.0	NW_004936679	753,023 - 783,296 (-)	NCBI

Sequence:

show sequence

CAGCAGCGTGACTTACGGCTGCCCCCTGGTGAGGAGCGGTTGCGGACGAATGAGAATGCGAGAT
TGGGTTCGAAGGTGTCCCGGGCGGGCTACCTTCCAAAATGACCCAGTCGGTGGTCGTACAGGTT
GGCCAGTGCGGAAACCAGATCGGTTGTTGCTTCTGGGACCTGGCCCTGAGGGAGCACGCCGCGG
TCAACCAGAAAGGAATTTATGATGAGGCAATAAGCAGCTTCTTTAGAAATGTGGATACCAGAGT
GGTTGGTGGTGGTGGCAGCATTTCCAAGGGGAAGATACGTTCTTTGAAAGCACGAGCTGTCTTG
ATTGACATGGAAGAAGGGGTAGTGAATGAAATTCTTCAGGGACCATTGAGAGATGTATTTGATA
GCAAGCAGCTCATCACTGATATTTCTGGCTCAGGAAATAACTGGGCTGTGGGGCACAAAGTTTT
TGGCAGTCTTTACCAAGAACAGATTTTAGAAAAACTCAGAAAGTCGGCAGAGCACTGTGATTGT
TTGCAGTGTTTCTTTATAATACACTCCATGGGAGGAGGAACAGGATCTGGACTTGGTACATTTC
TTTTAAAGGTTCTTGAAGATGAATTCCCAGAAGTATACAGATTTGTGACTTCAGTTTATCCTTC
TGGTGAGGATGATGTCATAACTTCACCTTATAATAGCATCTTGGCAATGAAGGAACTTAATGAG
CATGCAGACTGTGTGTTGCCCATTGATAATCAATCTTTATTTGACATCATTAGCAAAATTGACC
TCATGGTGAATTCTGGAAAGTTGGGTAAAACCGTGAAGCCCAAGAGTCTGATTACTTCAAGTGC
TGGGACTTTTAAAAAGCAGCATAAGAGGCCCTTTGATGCAATGAACAACATTGTGGCAAATTTG
ATGCTTAACCTAACAAGCTCTTCAAGGTTTGAAGGATCCCTTAACATGGACATTAATGAAATCA
GCATGAATTTAGTTCCTTTTCCACAACTTCATTATCTTGTGTCAAGCCTAACACCTCTATATAC
ACTGGCAGACATTAACGTTCCTCCTCGGAGGTTGGATCAGATGTTTTCAGATGCCTTTAGTAAA
GATTACCAACTAATTCAAGCAGATCCCAAACATAGCCTATATCTCGCCTGCGCCCTCATGGTTA
GAGGAAATGTACAGATTTCAGATCTTCGCAGAAATATTGAAAGATTAAAACCTTCTCTACATTT
TGTCTCCTGGAATCAAGAAGGCTGGAAGACTAGCCTGTGTTCTGTACCACCTGTGGGCCATTCT
CATTCATTATTAGCTTTAGCAAATAACACATGTGTGAAGCCTACCTTTGTGGAACTGAGAGAGA
GATTCATGAGGCTCTACAAGAAAAAGATCAGGCCCACAGTGCTTTCTCCTTGGGCTAGCCACTT
CATATCATCTATGGAAACAATGGATCCATGGATGGGTCTGACGTGAGTAGACAGAGCCCCTCCA
CTGTCTAGTGCTTAAAAGAAACAGAAGGAAGAAAAGACACTTTTTGATTGCTTTCAAAAACAAA
ATCTGAAGACAACAAGTCATTAGGATAATGCAAGAGGAA

hide sequence

RefSeq Acc Id:

XR_005732942

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	103,518,756 - 103,551,162 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005337478	(Get FASTA)	NCBI Sequence Viewer
	XP_021590306	(Get FASTA)	NCBI Sequence Viewer
	XP_040139163	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3290072	(Get FASTA)	NCBI Sequence Viewer
	KAG3290073	(Get FASTA)	NCBI Sequence Viewer
	KAG3290074	(Get FASTA)	NCBI Sequence Viewer
	KAG3290075	(Get FASTA)	NCBI Sequence Viewer
	KAG3290076	(Get FASTA)	NCBI Sequence Viewer
	KAG3290077	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005337478 ⟸ XM_005337421

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDEAISSFFRNVDTRVVGGGGSISKGKI
RSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGSLYQEQILEKL
RKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSVYPSGEDDVITSPYNS
ILAMKELNEHADCVLPIDNQSLFDIISKIDLMVNSGKLGKTVKPKSLITSSAGTFKKQHKRPFD
AMNNIVANLMLNLTSSSRFEGSLNMDINEISMNLVPFPQLHYLVSSLTPLYTLADINVPPRRLD
QMFSDAFSKDYQLIQADPKHSLYLACALMVRGNVQISDLRRNIERLKPSLHFVSWNQEGWKTSL
CSVPPVGHSHSLLALANNTCVKPTFVELRERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLS
ALIQEYNQLDATKSMPVEDFPRLRVAV

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RefSeq Acc Id:

XP_021590306 ⟸ XM_021734631

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDEAISSFFRNVDTRVVGGGGSISKGKI
RSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGSLYQEQILEKL
RKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSVYPSGEDDVITSPYNS
ILAMKELNEHADCVLPIDNQSLFDIISKIDLMVNSGKLGKTVKPKSLITSSAGTFKKQHKRPFD
AMNNIVANLMLNLTSSSRFEGSLNMDINEISMNLVPFPQLHYLVSSLTPLYTLADINVPPRRLD
QMFSDAFSKDYQLIQADPKHSLYLACALMVRGNVQISDLRRNIERLKPSLHFVSWNQEGWKTSL
CSVPPVGHSHSLLALANNTCVKPTFVELRERFMRLYKKKTLFDCFQKQNLKTTSH

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RefSeq Acc Id:	XP_040139163 ⟸ XM_040283229
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Tube1	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar