Bmal1 (basic helix-loop-helix ARNT like 1)

Gene: Bmal1 (basic helix-loop-helix ARNT like 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Bmal1

Name:

basic helix-loop-helix ARNT like 1 (Ensembl:aryl hydrocarbon receptor nuclear translocator like)

RGD ID:

12450675

Description:

ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN autophagy (ortholog); circadian rhythm (ortholog); energy homeostasis (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); alcohol withdrawal syndrome (ortholog); Brain Hypoxia-Ischemia (ortholog); FOUND IN chromatoid body (ortholog); CLOCK-BMAL transcription complex (ortholog); nuclear body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Arntl; aryl hydrocarbon receptor nuclear translocator like; aryl hydrocarbon receptor nuclear translocator like, transcript variant X1; aryl hydrocarbon receptor nuclear translocator like, transcript variant X2; aryl hydrocarbon receptor nuclear translocator like, transcript variant X3; aryl hydrocarbon receptor nuclear translocator like, transcript variant X4; aryl hydrocarbon receptor nuclear translocator like, transcript variant X5; aryl hydrocarbon receptor nuclear translocator like, transcript variant X6; aryl hydrocarbon receptor nuclear translocator like, transcript variant X7; aryl hydrocarbon receptor nuclear translocator like, transcript variant X8; aryl hydrocarbon receptor nuclear translocator like, transcript variant X9; aryl hydrocarbon receptor nuclear translocator-like protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936528	5,164,481 - 5,239,128 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936528	5,167,611 - 5,239,128 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alcohol dependence (ISO)

alcohol withdrawal syndrome (ISO)

Brain Hypoxia-Ischemia (ISO)

Chemical and Drug Induced Liver Injury (ISO)

cholestasis (ISO)

chronic myeloid leukemia (ISO)

diabetes mellitus (ISO)

Experimental Diabetes Mellitus (ISO)

Female Infertility (ISO)

genetic disease (ISO)

hyperargininemia (ISO)

intellectual disability (ISO)

Multiple Abnormalities (ISO)

Myocardial Ischemia (ISO)

Premature Aging (ISO)

primary ovarian insufficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagy (ISO)

circadian regulation of gene expression (IEA)

circadian rhythm (IEA,ISO)

energy homeostasis (ISO)

gene expression (ISO)

maternal process involved in parturition (ISO)

negative regulation of cold-induced thermogenesis (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of fat cell differentiation (ISO)

negative regulation of glucocorticoid receptor signaling pathway (ISO)

negative regulation of TOR signaling (ISO)

oxidative stress-induced premature senescence (ISO)

positive regulation of canonical Wnt signaling pathway (ISO)

positive regulation of circadian rhythm (IEA)

positive regulation of DNA-templated transcription (IEA)

positive regulation of protein acetylation (IEA)

positive regulation of skeletal muscle cell differentiation (ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

proteasome-mediated ubiquitin-dependent protein catabolic process (ISO)

protein import into nucleus (ISO)

regulation of cell cycle (ISO)

regulation of cellular senescence (ISO)

regulation of DNA-templated transcription (IEA,ISO)

regulation of hair cycle (IEA)

regulation of insulin secretion (ISO)

regulation of neurogenesis (ISO)

regulation of protein catabolic process (ISO)

regulation of transcription by RNA polymerase II (IEA)

regulation of type B pancreatic cell development (ISO)

response to redox state (IEA)

spermatogenesis (ISO)

Cellular Component

aryl hydrocarbon receptor complex (IEA)

chromatoid body (ISO)

CLOCK-BMAL transcription complex (IEA,ISO)

cytoplasm (IEA)

intracellular membrane-bounded organelle (IEA)

nuclear body (ISO)

nucleoplasm (IEA)

nucleus (IEA)

PML body (IEA)

transcription regulator complex (IEA)

Molecular Function

aryl hydrocarbon receptor binding (IEA)

bHLH transcription factor binding (ISO)

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor binding (IEA)

E-box binding (IEA)

Hsp90 protein binding (IEA)

protein binding (ISO)

protein dimerization activity (IEA)

protein heterodimerization activity (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (IEA)

transcription cis-regulatory region binding (ISO)

transcription coregulator activity (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Bmal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936528	5,164,481 - 5,239,128 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936528	5,167,611 - 5,239,128 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BMAL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	13,276,652 - 13,387,266 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	13,276,652 - 13,387,266 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	13,298,199 - 13,408,813 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	13,255,901 - 13,365,389 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	13,255,925 - 13,365,386	NCBI
Celera	11	13,425,472 - 13,534,997 (+)	NCBI		Celera
Cytogenetic Map	11	p15.3	NCBI
HuRef	11	12,979,421 - 13,089,003 (+)	NCBI		HuRef
CHM1_1	11	13,298,302 - 13,407,784 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	13,369,378 - 13,480,010 (+)	NCBI		T2T-CHM13v2.0

Bmal1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	112,777,820 - 112,913,333 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	112,806,672 - 112,913,333 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	113,178,471 - 113,314,126 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	113,207,465 - 113,314,126 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	120,350,979 - 120,457,636 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	112,998,646 - 113,105,303 (+)	NCBI		MGSCv36	mm8
Celera	7	113,186,397 - 113,287,835 (+)	NCBI		Celera
Cytogenetic Map	7	F1	NCBI
cM Map	7	59.17	NCBI

Bmal1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	176,766,222 - 176,864,741 (+)	NCBI		GRCr8
mRatBN7.2	1	167,331,756 - 167,430,235 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	167,331,633 - 167,430,231 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	175,666,810 - 175,765,622 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	182,852,900 - 182,951,712 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	175,548,108 - 175,646,871 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	178,039,002 - 178,137,469 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	178,039,063 - 178,137,465 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	185,007,527 - 185,105,413 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	171,062,181 - 171,162,426 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	171,251,951 - 171,282,040 (+)	NCBI
Celera	1	165,202,275 - 165,299,946 (+)	NCBI		Celera
Cytogenetic Map	1	q33	NCBI

Bmal1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	28,684,226 - 28,748,360 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	28,652,663 - 28,748,360 (+)	NCBI	ChiLan1.0	ChiLan1.0

BMAL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	15,716,032 - 15,825,471 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	15,678,367 - 15,788,400 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	13,436,580 - 13,547,135 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	13,163,028 - 13,240,376 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	13,163,028 - 13,240,376 (+)	Ensembl	panpan1.1		panPan2

ARNTL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	36,254,235 - 36,323,915 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	36,290,070 - 36,323,622 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	35,726,263 - 35,827,668 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	37,105,577 - 37,207,038 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	37,105,604 - 37,207,069 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	36,364,101 - 36,465,527 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	36,540,532 - 36,641,924 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	36,829,310 - 36,930,753 (+)	NCBI		UU_Cfam_GSD_1.0

ARNTL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	45,895,289 - 45,988,570 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	45,895,637 - 46,025,174 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	49,303,279 - 49,335,397 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BMAL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	51,430,670 - 51,540,344 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	51,431,180 - 51,462,674 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	149,016,016 - 149,124,776 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bmal1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	5,317,635 - 5,391,645 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624766	5,295,120 - 5,391,645 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005326786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013359348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013359349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040284726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000026164 ⟹ ENSSTOP00000016211

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936528	5,164,481 - 5,198,683 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000036526 ⟹ ENSSTOP00000031511

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936528	5,164,481 - 5,239,128 (-)	Ensembl

RefSeq Acc Id:

XM_005326786 ⟹ XP_005326843

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,164,703 (-)	NCBI
SpeTri2.0	NW_004936528	5,167,655 - 5,198,625 (-)	NCBI

Sequence:

show sequence

CCACCGACCTGCTCTCCAGCTCCCTTGGCACCAGTGGTGTGGATTGCAACCGCAAGCGGAAAGG
CAGCTCCACTGACTACCATTCACAGGTCGAATTTGGGGAGCACAATGGCTGGAGGTCAGATGCC
CACTAGGAGATGCTATGATTAATATAGAAAGCATGGACACAGACAAAGATGACCCTCATGGAAG
GTTAGAATATACAGAACATCAGGGAAGGATCAAGAATGCAAGGGAAGCTCACAGTCAGATTGAA
AAGAGGCGTCGGGATAAAATGAACAGTTTTATTGATGAATTGGCTTCTTTGGTACCGACATGTA
ATGCGATGTCCAGGAAATTAGATAAACTGACCGTGCTAAGGATGGCCGTTCAGCACATGAAAAC
ATTAAGAGGTGCCACCAATCCATATACAGAAGCAAACTATAAACCAACTTTTCTATCAGATGAT
GAATTGAAACACCTCATTCTCAGGGCAGCAGATGGATTTTTGTTTGTCGTAGGATGTGACCGAG
GGAAGATACTCTTTGTCTCAGAGTCTGTCTTCAAGATCCTCAACTATAGCCAGAACGATCTGAT
TGGTCAGAGTTTGTTTGACTACCTGCACCCTAAAGATATCGCCAAAGTCAAGGAGCAGCTCTCC
TCCTCTGACACAGCACCCCGGGAGCGGCTCATAGATGCAAAAACTGGACTTCCAGTTAAAACAG
ATATAACCCCTGGGCCGTCTCGATTATGTTCTGGAGCACGACGTTCTTTCTTCTGTAGGATGAA
GTGTAACAGGCCTTCAGTGAAGGTCGAAGACAAGGACTTCCCCTCCACCTGTTCAAAGAAAAAA
GCAGATCGAAAAAGCTTCTGTACAATCCACAGCACAGGCTATTTGAAAAGCTGGCCACCCACAA
AGATGGGGTTGGATGAAGACAATGAACCAGACAACGAGGGCTGTAACCTCAGCTGCCTTGTCGC
AATTGGACGACTGCATTCTCATGTGGTTCCCCAAACAGTGAACGGGGAAATCAGGGTGAAATCC
ATGGAGTACGTTTCTCGGCATGCAATAGATGGGAAATTTGTCTTTGTAGACCAGAGGGCAACAG
CTATTCTGGCATATTTACCACAAGAACTCCTAGGCACATCATGTTATGAATATTTTCATCAAGA
TGACATAGGACATCTTGCAGAATGTCATAGGCAAGTTTTACAGACGAGAGACAAGATTACAACT
AATTGCTATAAGTTTAAAATCAAAGATGGTTCTTTCATCACACTACGAAGTCGATGGTTCAGTT
TCATGAACCCCTGGACCAAGGAAGTAGAATACATCGTCTCAACCAACACTGTTGTTTTAGCCAA
CGTCCTGGAAGGCGGGGATCCAACCTTCCCGCAGCTCACAACGTCCCCTCACAGCATGGACAGC
ATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCTACTGTTCCAGGAATTCCAGGGG
GAACCAGGGCTGGGGCAGGAAAAATAGGTCGAATGATTGCTGAGGAAATCATGGAAATCCACAG
GATAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCCCATTGAACATTACAAGTACGCCTCCC
CCTGATGCCTCCTCTCCAGGAGGCAAGAAGATTTTAAACGGAGGGACTCCAGACATTCCTTCCA
GTGGCCTACTGCCAGGGCAGGCTCAAGAGAACCCAAGTTATCCATATTCTGATAGTTCTTCTAT
TCTTGGTGAAAACCCCCACATAGGCATAGACATGATAGACAACGACCAAGGATCAAGTAGTCCC
AGTAATGATGAAGCAGCAATGGCTGTCATCATGAGCCTGTTGGAAGCAGATGCTGGGCTGGGTG
GCCCTGTTGACTTTAGCGACTTGCCATGGCCGCTGTAAACACTACATGTTGCTTTGGCAACAGA
TACAGTATCAAAGTGCATTACTGGTGGAGTTTTACAGTCTGTGAAGCTTACTGGATAGGGAGAG
AACAGCTTTTATGTACTGATCTCATAAAAGCCATCTCAGAGCCATTGATACAAGTCAATCTTAC
TATGTGTAACTTCAGACAAAGTGGAACTAAGCCTGCGCCAGTGTTTCCTCATCATTGATTATTG
GGCTAGCTGTGGATAGCTTGCATTAATTGTATATTTTGGATTCTGTTTGTGTTGAATTTTTTAA
TCATTGTGCACAGAAGCATCATTGGTAGCTTTTATATGCAAATGGTCATTTCAGATGTATGGTG
TTTTTACACTACAAAGAAGTCCCCCATGTGGATATTTCTTATACTAATTGTATCATAAAGCTGT
TTATTCTTCCTTGTAAGAATCCTTTACTATAAATATGGGTTAAAGTATAATGTATTAGACAGTT
AAATATTTTTAATAAATGTTTCCCTTGTTCTATAAA

hide sequence

RefSeq Acc Id:

XM_013359348 ⟹ XP_013214802

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI
SpeTri2.0	NW_004936528	5,167,655 - 5,239,128 (-)	NCBI

Sequence:

show sequence

GGTGGTGCGGGCTAAAGTGTATGCTTTTGGATCCAACCTCGACTACTCAAATGTGGAATCCTAG
GCCTTCATTGGTTTTTGGAAGAAGTTGACTGCTTGAGAGGAAATTACAAAAACATGAAAATCGC
TTTGAGGTGACCGACAAGTTCAGCAGCCCCTTGCTCCTCCCAGGCTGGCTCTGAGGTTGAGAGC
TGTAACTTCAGATGAGGGAACTTGGGCCTAGAGGGAAGGAGTGACAGCTCCAGTCAGATCCCCT
GGAGCTGAGAGCCCTGACTGCCTGCAGGGCCCAGCCTCTTCAACTGGGTCTGGAGTTGGAGTTC
CTTAGAAGAGCTCCCAATGGCGGACCAGAGAATGGACATTTCCTCGACAATCAGTGACTTCATG
TCCCCAGGCCCCACCGACCTGCTCTCCAGCTCCCTTGGCACCAGTGGTGTGGATTGCAACCGCA
AGCGGAAAGGCAGCTCCACTGACTACCAAGAAAGCATGGACACAGACAAAGATGACCCTCATGG
AAGGTTAGAATATACAGAACATCAGGGAAGGATCAAGAATGCAAGGGAAGCTCACAGTCAGATT
GAAAAGAGGCGTCGGGATAAAATGAACAGTTTTATTGATGAATTGGCTTCTTTGGTACCGACAT
GTAATGCGATGTCCAGGAAATTAGATAAACTGACCGTGCTAAGGATGGCCGTTCAGCACATGAA
AACATTAAGAGGTGCCACCAATCCATATACAGAAGCAAACTATAAACCAACTTTTCTATCAGAT
GATGAATTGAAACACCTCATTCTCAGGGCAGCAGATGGATTTTTGTTTGTCGTAGGATGTGACC
GAGGGAAGATACTCTTTGTCTCAGAGTCTGTCTTCAAGATCCTCAACTATAGCCAGAACGATCT
GATTGGTCAGAGTTTGTTTGACTACCTGCACCCTAAAGATATCGCCAAAGTCAAGGAGCAGCTC
TCCTCCTCTGACACAGCACCCCGGGAGCGGCTCATAGATGCAAAAACTGGACTTCCAGTTAAAA
CAGATATAACCCCTGGGCCGTCTCGATTATGTTCTGGAGCACGACGTTCTTTCTTCTGTAGGAT
GAAGTGTAACAGGCCTTCAGTGAAGGTCGAAGACAAGGACTTCCCCTCCACCTGTTCAAAGAAA
AAAGCAGATCGAAAAAGCTTCTGTACAATCCACAGCACAGGCTATTTGAAAAGCTGGCCACCCA
CAAAGATGGGGTTGGATGAAGACAATGAACCAGACAACGAGGGCTGTAACCTCAGCTGCCTTGT
CGCAATTGGACGACTGCATTCTCATGTGGTTCCCCAAACAGTGAACGGGGAAATCAGGGTGAAA
TCCATGGAGTACGTTTCTCGGCATGCAATAGATGGGAAATTTGTCTTTGTAGACCAGAGGGCAA
CAGCTATTCTGGCATATTTACCACAAGAACTCCTAGGCACATCATGTTATGAATATTTTCATCA
AGATGACATAGGACATCTTGCAGAATGTCATAGGCAAGTTTTACAGACGAGAGACAAGATTACA
ACTAATTGCTATAAGTTTAAAATCAAAGATGGTTCTTTCATCACACTACGAAGTCGATGGTTCA
GTTTCATGAACCCCTGGACCAAGGAAGTAGAATACATCGTCTCAACCAACACTGTTGTTTTAGC
CAACGTCCTGGAAGGCGGGGATCCAACCTTCCCGCAGCTCACAACGTCCCCTCACAGCATGGAC
AGCATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCTACTGTTCCAGGAATTCCAG
GGGGAACCAGGGCTGGGGCAGGAAAAATAGGTCGAATGATTGCTGAGGAAATCATGGAAATCCA
CAGGATAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCCCATTGAACATTACAAGTACGCCT
CCCCCTGATGCCTCCTCTCCAGGAGGCAAGAAGATTTTAAACGGAGGGACTCCAGACATTCCTT
CCAGTGGCCTACTGCCAGGGCAGGCTCAAGAGAACCCAAGTTATCCATATTCTGATAGTTCTTC
TATTCTTGGTGAAAACCCCCACATAGGCATAGACATGATAGACAACGACCAAGGATCAAGTAGT
CCCAGTAATGATGAAGCAGCAATGGCTGTCATCATGAGCCTGTTGGAAGCAGATGCTGGGCTGG
GTGGCCCTGTTGACTTTAGCGACTTGCCATGGCCGCTGTAAACACTACATGTTGCTTTGGCAAC
AGATACAGTATCAAAGTGCATTACTGGTGGAGTTTTACAGTCTGTGAAGCTTACTGGATAGGGA
GAGAACAGCTTTTATGTACTGATCTCATAAAAGCCATCTCAGAGCCATTGATACAAGTCAATCT
TACTATGTGTAACTTCAGACAAAGTGGAACTAAGCCTGCGCCAGTGTTTCCTCATCATTGATTA
TTGGGCTAGCTGTGGATAGCTTGCATTAATTGTATATTTTGGATTCTGTTTGTGTTGAATTTTT
TAATCATTGTGCACAGAAGCATCATTGGTAGCTTTTATATGCAAATGGTCATTTCAGATGTATG
GTGTTTTTACACTACAAAGAAGTCCCCCATGTGGATATTTCTTATACTAATTGTATCATAAAGC
TGTTTATTCTTCCTTGTAAGAATCCTTTACTATAAATATGGGTTAAAGTATAATGTATTAGACA
GTTAAATATTTTTAATAAATGTTTCCCTTGTTCTATAAA

hide sequence

RefSeq Acc Id:

XM_013359349 ⟹ XP_013214803

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI
SpeTri2.0	NW_004936528	5,167,655 - 5,239,128 (-)	NCBI

Sequence:

show sequence

GGTGGTGCGGGCTAAAGTGTATGCTTTTGGATCCAACCTCGACTACTCAAATGTGGAATCCTAG
GCCTTCATTGGTTTTTGGAAGAAGTTGACTGCTTGAGAGGAAATTACAAAAACATGAAAATCGC
TTTGAGGTGACCGACAAGTTCAGCAGCCCCTTGCTCCTCCCAGGCTGGCTCTGAGGTTGAGAGC
TGTAACTTCAGATGAGGGAACTTGGGCCTAGAGGGAAGGAGTGACAGCTCCAGTCAGATCCCCT
GGAGCTGAGAGCCCTGACTGCCTGCAGGGCCCAGCCTCTTCAACTGGGTCTGGAGTTGGAGTTC
CTTAGAAGAGCTCCCAATGGCGGACCAGAGAATGGACATTTCCTCGACAATCAGTGACTTCATG
TCCCCAGGCCCCACCGACCTGCTCTCCAGCTCCCTTGGCACCAGTGGTGTGGATTGCAACCGCA
AGCGGAAAGGCAGCTCCACTGACTACCAAGAAAGCATGGACACAGACAAAGATGACCCTCATGG
AAGGTTAGAATATACAGAACATCAGGGAAGGATCAAGAATGCAAGGGAAGCTCACAGTCAGATT
GAAAAGAGGCGTCGGGATAAAATGAACAGTTTTATTGATGAATTGGCTTCTTTGGTACCGACAT
GTAATGCGATGTCCAGGAAATTAGATAAACTGACCGTGCTAAGGATGGCCGTTCAGCACATGAA
AACATTAAGAGGTGCCACCAATCCATATACAGAAGCAAACTATAAACCAACTTTTCTATCAGAT
GATGAATTGAAACACCTCATTCTCAGGGCAGCAGATGGATTTTTGTTTGTCGTAGGATGTGACC
GAGGGAAGATACTCTTTGTCTCAGAGTCTGTCTTCAAGATCCTCAACTATAGCCAGAACGATCT
GATTGGTCAGAGTTTGTTTGACTACCTGCACCCTAAAGATATCGCCAAAGTCAAGGAGCAGCTC
TCCTCCTCTGACACAGCACCCCGGGAGCGGCTCATAGATGCAAAAACTGGACTTCCAGTTAAAA
CAGATATAACCCCTGGGCCGTCTCGATTATGTTCTGGAGCACGACGTTCTTTCTTCTGTAGGAT
GAAGTGTAACAGGCCTTCAGTGAAGGTCGAAGACAAGGACTTCCCCTCCACCTGTTCAAAGAAA
AAAGATCGAAAAAGCTTCTGTACAATCCACAGCACAGGCTATTTGAAAAGCTGGCCACCCACAA
AGATGGGGTTGGATGAAGACAATGAACCAGACAACGAGGGCTGTAACCTCAGCTGCCTTGTCGC
AATTGGACGACTGCATTCTCATGTGGTTCCCCAAACAGTGAACGGGGAAATCAGGGTGAAATCC
ATGGAGTACGTTTCTCGGCATGCAATAGATGGGAAATTTGTCTTTGTAGACCAGAGGGCAACAG
CTATTCTGGCATATTTACCACAAGAACTCCTAGGCACATCATGTTATGAATATTTTCATCAAGA
TGACATAGGACATCTTGCAGAATGTCATAGGCAAGTTTTACAGACGAGAGACAAGATTACAACT
AATTGCTATAAGTTTAAAATCAAAGATGGTTCTTTCATCACACTACGAAGTCGATGGTTCAGTT
TCATGAACCCCTGGACCAAGGAAGTAGAATACATCGTCTCAACCAACACTGTTGTTTTAGCCAA
CGTCCTGGAAGGCGGGGATCCAACCTTCCCGCAGCTCACAACGTCCCCTCACAGCATGGACAGC
ATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCTACTGTTCCAGGAATTCCAGGGG
GAACCAGGGCTGGGGCAGGAAAAATAGGTCGAATGATTGCTGAGGAAATCATGGAAATCCACAG
GATAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCCCATTGAACATTACAAGTACGCCTCCC
CCTGATGCCTCCTCTCCAGGAGGCAAGAAGATTTTAAACGGAGGGACTCCAGACATTCCTTCCA
GTGGCCTACTGCCAGGGCAGGCTCAAGAGAACCCAAGTTATCCATATTCTGATAGTTCTTCTAT
TCTTGGTGAAAACCCCCACATAGGCATAGACATGATAGACAACGACCAAGGATCAAGTAGTCCC
AGTAATGATGAAGCAGCAATGGCTGTCATCATGAGCCTGTTGGAAGCAGATGCTGGGCTGGGTG
GCCCTGTTGACTTTAGCGACTTGCCATGGCCGCTGTAAACACTACATGTTGCTTTGGCAACAGA
TACAGTATCAAAGTGCATTACTGGTGGAGTTTTACAGTCTGTGAAGCTTACTGGATAGGGAGAG
AACAGCTTTTATGTACTGATCTCATAAAAGCCATCTCAGAGCCATTGATACAAGTCAATCTTAC
TATGTGTAACTTCAGACAAAGTGGAACTAAGCCTGCGCCAGTGTTTCCTCATCATTGATTATTG
GGCTAGCTGTGGATAGCTTGCATTAATTGTATATTTTGGATTCTGTTTGTGTTGAATTTTTTAA
TCATTGTGCACAGAAGCATCATTGGTAGCTTTTATATGCAAATGGTCATTTCAGATGTATGGTG
TTTTTACACTACAAAGAAGTCCCCCATGTGGATATTTCTTATACTAATTGTATCATAAAGCTGT
TTATTCTTCCTTGTAAGAATCCTTTACTATAAATATGGGTTAAAGTATAATGTATTAGACAGTT
AAATATTTTTAATAAATGTTTCCCTTGTTCTATAAA

hide sequence

RefSeq Acc Id:

XM_021727335 ⟹ XP_021583010

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI
SpeTri2.0	NW_004936528	5,167,611 - 5,239,128 (-)	NCBI

Sequence:

show sequence

GGTGGTGCGGGCTAAAGTGTATGCTTTTGGATCCAACCTCGACTACTCAAATGTGGAATCCTAG
GCCTTCATTGGTTTTTGGAAGAAGTTGACTGCTTGAGAGGAAATTACAAAAACATGAAAATCGC
TTTGAGGTGACCGACAAGTTCAGCAGCCCCTTGCTCCTCCCAGGCTGGCTCTGAGGTTGAGAGC
TGTAACTTCAGATGAGGGAACTTGGGCCTAGAGGGAAGGAGTGACAGCTCCAGTCAGATCCCCT
GGAGCTGAGAGCCCTGACTGCCTGCAGGGCCCAGCCTCTTCAACTGGGTCTGGAGTTGGAGTTC
CTTAGAAGAGCTCCCAATGGCGGACCAGAGAATGGACATTTCCTCGACAATCAGTGACTTCATG
TCCCCAGGCCCCACCGACCTGCTCTCCAGCTCCCTTGGCACCAGTGGTGTGGATTGCAACCGCA
AGCGGAAAGGCAGCTCCACTGACTACCAACTTGATGACTTTTCTTTTGAAGAAAGCATGGACAC
AGACAAAGATGACCCTCATGGAAGGTTAGAATATACAGAACATCAGGGAAGGATCAAGAATGCA
AGGGAAGCTCACAGTCAGATTGAAAAGAGGCGTCGGGATAAAATGAACAGTTTTATTGATGAAT
TGGCTTCTTTGGTACCGACATGTAATGCGATGTCCAGGAAATTAGATAAACTGACCGTGCTAAG
GATGGCCGTTCAGCACATGAAAACATTAAGAGGTGCCACCAATCCATATACAGAAGCAAACTAT
AAACCAACTTTTCTATCAGATGATGAATTGAAACACCTCATTCTCAGGGCAGCAGATGGATTTT
TGTTTGTCGTAGGATGTGACCGAGGGAAGATACTCTTTGTCTCAGAGTCTGTCTTCAAGATCCT
CAACTATAGCCAGAACGATCTGATTGGTCAGAGTTTGTTTGACTACCTGCACCCTAAAGATATC
GCCAAAGTCAAGGAGCAGCTCTCCTCCTCTGACACAGCACCCCGGGAGCGGCTCATAGATGCAA
AAACTGGACTTCCAGTTAAAACAGATATAACCCCTGGGCCGTCTCGATTATGTTCTGGAGCACG
ACGTTCTTTCTTCTGTAGGATGAAGTGTAACAGGCCTTCAGTGAAGGTCGAAGACAAGGACTTC
CCCTCCACCTGTTCAAAGAAAAAAGCAGATCGAAAAAGCTTCTGTACAATCCACAGCACAGGCT
ATTTGAAAAGCTGGCCACCCACAAAGATGGGGTTGGATGAAGACAATGAACCAGACAACGAGGG
CTGTAACCTCAGCTGCCTTGTCGCAATTGGACGACTGCATTCTCATGTGGTTCCCCAAACAGTG
AACGGGGAAATCAGGGTGAAATCCATGGAGTACGTTTCTCGGCATGCAATAGATGGGAAATTTG
TCTTTGTAGACCAGAGGGCAACAGCTATTCTGGCATATTTACCACAAGAACTCCTAGGCACATC
ATGTTATGAATATTTTCATCAAGATGACATAGGACATCTTGCAGAATGTCATAGGCAAGTTTTA
CAGACGAGAGACAAGATTACAACTAATTGCTATAAGTTTAAAATCAAAGATGGTTCTTTCATCA
CACTACGAAGTCGATGGTTCAGTTTCATGAACCCCTGGACCAAGGAAGTAGAATACATCGTCTC
AACCAACACTGTTGTTTTAGCCAACGTCCTGGAAGGCGGGGATCCAACCTTCCCGCAGCTCACA
ACGTCCCCTCACAGCATGGACAGCATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATC
CTACTGTTCCAGGAATTCCAGGGGGAACCAGGGCTGGGGCAGGAAAAATAGGTCGAATGATTGC
TGAGGAAATCATGGAAATCCACAGGATAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCCCA
TTGAACATTACAAGTACGCCTCCCCCTGATGCCTCCTCTCCAGGAGGCAAGAAGATTTTAAACG
GAGGGACTCCAGACATTCCTTCCAGTGGCCTACTGCCAGGGCAGGCTCAAGAGAACCCAAGTTA
TCCATATTCTGATAGTTCTTCTATTCTTGGTGAAAACCCCCACATAGGCATAGACATGATAGAC
AACGACCAAGGATCAAGTAGTCCCAGTAATGATGAAGCAGCAATGGCTGTCATCATGAGCCTGT
TGGAAGCAGATGCTGGGCTGGGTGGCCCTGTTGACTTTAGCGACTTGCCATGGCCGCTGTAAAC
ACTACATGTTGCTTTGGCAACAGATACAGTATCAAAGTGCATTACTGGTGGAGTTTTACAGTCT
GTGAAGCTTACTGGATAGGGAGAGAACAGCTTTTATGTACTGATCTCATAAAAGCCATCTCAGA
GCCATTGATACAAGTCAATCTTACTATGTGTAACTTCAGACAAAGTGGAACTAAGCCTGCGCCA
GTGTTTCCTCATCATTGATTATTGGGCTAGCTGTGGATAGCTTGCATTAATTGTATATTTTGGA
TTCTGTTTGTGTTGAATTTTTTAATCATTGTGCACAGAAGCATCATTGGTAGCTTTTATATGCA
AATGGTCATTTCAGATGTATGGTGTTTTTACACTACAAAGAAGTCCCCCATGTGGATATTTCTT
ATACTAATTGTATCATAAAGCTGTTTATTCTTCCTTGTAAGAATCCTTTACTATAAATATGGGT
TAAAGTATAATGTATTAGACAGTTAAATATTTTTAATAAATGTTTCCCTTGTTCTATAAATACT
GTTCCCACTTCAAATATTAAGAAAAAAAATTCCTACATGC

hide sequence

RefSeq Acc Id:

XM_021727336 ⟹ XP_021583011

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI
SpeTri2.0	NW_004936528	5,167,611 - 5,239,128 (-)	NCBI

Sequence:

show sequence

GGTGGTGCGGGCTAAAGTGTATGCTTTTGGATCCAACCTCGACTACTCAAATGTGGAATCCTAG
GCCTTCATTGGTTTTTGGAAGAAGTTGACTGCTTGAGAGGAAATTACAAAAACATGAAAATCGC
TTTGAGGTGACCGACAAGTTCAGCAGCCCCTTGCTCCTCCCAGGCTGGCTCTGAGGTTGAGAGC
TGTAACTTCAGATGAGGGAACTTGGGCCTAGAGGGAAGGAGTGACAGCTCCAGTCAGATCCCCT
GGAGCTGAGAGCCCTGACTGCCTGCAGGGCCCAGCCTCTTCAACTGGGTCTGGAGTTGGAGTTC
CTTAGAAGAGCTCCCAATGGCGGACCAGAGAATGGACATTTCCTCGACAATCAGTGACTTCATG
TCCCCAGGCCCCACCGACCTGCTCTCCAGCTCCCTTGGCACCAGTGGTGTGGATTGCAACCGCA
AGCGGAAAGGCAGCTCCACTGACTACCAACTTGATGACTTTTCTTTTGAAGAAAGCATGGACAC
AGACAAAGATGACCCTCATGGAAGGTTAGAATATACAGAACATCAGGGAAGGATCAAGAATGCA
AGGGAAGCTCACAGTCAGATTGAAAAGAGGCGTCGGGATAAAATGAACAGTTTTATTGATGAAT
TGGCTTCTTTGGTACCGACATGTAATGCGATGTCCAGGAAATTAGATAAACTGACCGTGCTAAG
GATGGCCGTTCAGCACATGAAAACATTAAGAGGTGCCACCAATCCATATACAGAAGCAAACTAT
AAACCAACTTTTCTATCAGATGATGAATTGAAACACCTCATTCTCAGGGCAGCAGATGGATTTT
TGTTTGTCGTAGGATGTGACCGAGGGAAGATACTCTTTGTCTCAGAGTCTGTCTTCAAGATCCT
CAACTATAGCCAGAACGATCTGATTGGTCAGAGTTTGTTTGACTACCTGCACCCTAAAGATATC
GCCAAAGTCAAGGAGCAGCTCTCCTCCTCTGACACAGCACCCCGGGAGCGGCTCATAGATGCAA
AAACTGGACTTCCAGTTAAAACAGATATAACCCCTGGGCCGTCTCGATTATGTTCTGGAGCACG
ACGTTCTTTCTTCTGTAGGATGAAGTGTAACAGGCCTTCAGTGAAGGTCGAAGACAAGGACTTC
CCCTCCACCTGTTCAAAGAAAAAAGATCGAAAAAGCTTCTGTACAATCCACAGCACAGGCTATT
TGAAAAGCTGGCCACCCACAAAGATGGGGTTGGATGAAGACAATGAACCAGACAACGAGGGCTG
TAACCTCAGCTGCCTTGTCGCAATTGGACGACTGCATTCTCATGTGGTTCCCCAAACAGTGAAC
GGGGAAATCAGGGTGAAATCCATGGAGTACGTTTCTCGGCATGCAATAGATGGGAAATTTGTCT
TTGTAGACCAGAGGGCAACAGCTATTCTGGCATATTTACCACAAGAACTCCTAGGCACATCATG
TTATGAATATTTTCATCAAGATGACATAGGACATCTTGCAGAATGTCATAGGCAAGTTTTACAG
ACGAGAGACAAGATTACAACTAATTGCTATAAGTTTAAAATCAAAGATGGTTCTTTCATCACAC
TACGAAGTCGATGGTTCAGTTTCATGAACCCCTGGACCAAGGAAGTAGAATACATCGTCTCAAC
CAACACTGTTGTTTTAGCCAACGTCCTGGAAGGCGGGGATCCAACCTTCCCGCAGCTCACAACG
TCCCCTCACAGCATGGACAGCATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCTA
CTGTTCCAGGAATTCCAGGGGGAACCAGGGCTGGGGCAGGAAAAATAGGTCGAATGATTGCTGA
GGAAATCATGGAAATCCACAGGATAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCCCATTG
AACATTACAAGTACGCCTCCCCCTGATGCCTCCTCTCCAGGAGGCAAGAAGATTTTAAACGGAG
GGACTCCAGACATTCCTTCCAGTGGCCTACTGCCAGGGCAGGCTCAAGAGAACCCAAGTTATCC
ATATTCTGATAGTTCTTCTATTCTTGGTGAAAACCCCCACATAGGCATAGACATGATAGACAAC
GACCAAGGATCAAGTAGTCCCAGTAATGATGAAGCAGCAATGGCTGTCATCATGAGCCTGTTGG
AAGCAGATGCTGGGCTGGGTGGCCCTGTTGACTTTAGCGACTTGCCATGGCCGCTGTAAACACT
ACATGTTGCTTTGGCAACAGATACAGTATCAAAGTGCATTACTGGTGGAGTTTTACAGTCTGTG
AAGCTTACTGGATAGGGAGAGAACAGCTTTTATGTACTGATCTCATAAAAGCCATCTCAGAGCC
ATTGATACAAGTCAATCTTACTATGTGTAACTTCAGACAAAGTGGAACTAAGCCTGCGCCAGTG
TTTCCTCATCATTGATTATTGGGCTAGCTGTGGATAGCTTGCATTAATTGTATATTTTGGATTC
TGTTTGTGTTGAATTTTTTAATCATTGTGCACAGAAGCATCATTGGTAGCTTTTATATGCAAAT
GGTCATTTCAGATGTATGGTGTTTTTACACTACAAAGAAGTCCCCCATGTGGATATTTCTTATA
CTAATTGTATCATAAAGCTGTTTATTCTTCCTTGTAAGAATCCTTTACTATAAATATGGGTTAA
AGTATAATGTATTAGACAGTTAAATATTTTTAATAAATGTTTCCCTTGTTCTATAAATACTGTT
CCCACTTCAAATATTAAGAAAAAAAATTCCTACATGC

hide sequence

RefSeq Acc Id:

XM_021727337 ⟹ XP_021583012

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI
SpeTri2.0	NW_004936528	5,167,655 - 5,239,128 (-)	NCBI

Sequence:

show sequence

GGTGGTGCGGGCTAAAGTGTATGCTTTTGGATCCAACCTCGACTACTCAAATGTGGAATCCTAG
GCCTTCATTGGTTTTTGGAAGAAGTTGACTGCTTGAGAGGAAATTACAAAAACATGAAAATCGC
TTTGAGGTGACCGACAAGTTCAGCAGCCCCTTGCTCCTCCCAGGCTGGCTCTGAGGTTGAGAGC
TGTAACTTCAGATGAGGGAACTTGGGCCTAGAGGGAAGGAGTGACAGCTCCAGTCAGATCCCCT
GGAGCTGAGAGCCCTGACTGCCTGCAGGGCCCAGCCTCTTCAACTGGGTCTGGAGTTGGAGTTC
CTTAGAAGAGCTCCCAATGGCGGACCAGAGAATGGACATTTCCTCGACAATCAGTGACTTCATG
TCCCCAGGCCCCACCGACCTGCTCTCCAGCTCCCTTGGCACCAGTGGTGTGGATTGCAACCGCA
AGCGGAAAGGCAGCTCCACTGACTACCAGTTAGAATATACAGAACATCAGGGAAGGATCAAGAA
TGCAAGGGAAGCTCACAGTCAGATTGAAAAGAGGCGTCGGGATAAAATGAACAGTTTTATTGAT
GAATTGGCTTCTTTGGTACCGACATGTAATGCGATGTCCAGGAAATTAGATAAACTGACCGTGC
TAAGGATGGCCGTTCAGCACATGAAAACATTAAGAGGTGCCACCAATCCATATACAGAAGCAAA
CTATAAACCAACTTTTCTATCAGATGATGAATTGAAACACCTCATTCTCAGGGCAGCAGATGGA
TTTTTGTTTGTCGTAGGATGTGACCGAGGGAAGATACTCTTTGTCTCAGAGTCTGTCTTCAAGA
TCCTCAACTATAGCCAGAACGATCTGATTGGTCAGAGTTTGTTTGACTACCTGCACCCTAAAGA
TATCGCCAAAGTCAAGGAGCAGCTCTCCTCCTCTGACACAGCACCCCGGGAGCGGCTCATAGAT
GCAAAAACTGGACTTCCAGTTAAAACAGATATAACCCCTGGGCCGTCTCGATTATGTTCTGGAG
CACGACGTTCTTTCTTCTGTAGGATGAAGTGTAACAGGCCTTCAGTGAAGGTCGAAGACAAGGA
CTTCCCCTCCACCTGTTCAAAGAAAAAAGCAGATCGAAAAAGCTTCTGTACAATCCACAGCACA
GGCTATTTGAAAAGCTGGCCACCCACAAAGATGGGGTTGGATGAAGACAATGAACCAGACAACG
AGGGCTGTAACCTCAGCTGCCTTGTCGCAATTGGACGACTGCATTCTCATGTGGTTCCCCAAAC
AGTGAACGGGGAAATCAGGGTGAAATCCATGGAGTACGTTTCTCGGCATGCAATAGATGGGAAA
TTTGTCTTTGTAGACCAGAGGGCAACAGCTATTCTGGCATATTTACCACAAGAACTCCTAGGCA
CATCATGTTATGAATATTTTCATCAAGATGACATAGGACATCTTGCAGAATGTCATAGGCAAGT
TTTACAGACGAGAGACAAGATTACAACTAATTGCTATAAGTTTAAAATCAAAGATGGTTCTTTC
ATCACACTACGAAGTCGATGGTTCAGTTTCATGAACCCCTGGACCAAGGAAGTAGAATACATCG
TCTCAACCAACACTGTTGTTTTAGCCAACGTCCTGGAAGGCGGGGATCCAACCTTCCCGCAGCT
CACAACGTCCCCTCACAGCATGGACAGCATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGACT
CATCCTACTGTTCCAGGAATTCCAGGGGGAACCAGGGCTGGGGCAGGAAAAATAGGTCGAATGA
TTGCTGAGGAAATCATGGAAATCCACAGGATAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAG
CCCATTGAACATTACAAGTACGCCTCCCCCTGATGCCTCCTCTCCAGGAGGCAAGAAGATTTTA
AACGGAGGGACTCCAGACATTCCTTCCAGTGGCCTACTGCCAGGGCAGGCTCAAGAGAACCCAA
GTTATCCATATTCTGATAGTTCTTCTATTCTTGGTGAAAACCCCCACATAGGCATAGACATGAT
AGACAACGACCAAGGATCAAGTAGTCCCAGTAATGATGAAGCAGCAATGGCTGTCATCATGAGC
CTGTTGGAAGCAGATGCTGGGCTGGGTGGCCCTGTTGACTTTAGCGACTTGCCATGGCCGCTGT
AAACACTACATGTTGCTTTGGCAACAGATACAGTATCAAAGTGCATTACTGGTGGAGTTTTACA
GTCTGTGAAGCTTACTGGATAGGGAGAGAACAGCTTTTATGTACTGATCTCATAAAAGCCATCT
CAGAGCCATTGATACAAGTCAATCTTACTATGTGTAACTTCAGACAAAGTGGAACTAAGCCTGC
GCCAGTGTTTCCTCATCATTGATTATTGGGCTAGCTGTGGATAGCTTGCATTAATTGTATATTT
TGGATTCTGTTTGTGTTGAATTTTTTAATCATTGTGCACAGAAGCATCATTGGTAGCTTTTATA
TGCAAATGGTCATTTCAGATGTATGGTGTTTTTACACTACAAAGAAGTCCCCCATGTGGATATT
TCTTATACTAATTGTATCATAAAGCTGTTTATTCTTCCTTGTAAGAATCCTTTACTATAAATAT
GGGTTAAAGTATAATGTATTAGACAGTTAAATATTTTTAATAAATGTTTCCCTTGTTCTATAAA

hide sequence

RefSeq Acc Id:

XM_021727338 ⟹ XP_021583013

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI
SpeTri2.0	NW_004936528	5,167,611 - 5,239,128 (-)	NCBI

Sequence:

show sequence

GGTGGTGCGGGCTAAAGTGTATGCTTTTGGATCCAACCTCGACTACTCAAATGTGGAATCCTAG
GCCTTCATTGGTTTTTGGAAGAAGTTGACTGCTTGAGAGGAAATTACAAAAACATGAAAATCGC
TTTGAGGTGACCGACAAGTTCAGCAGCCCCTTGCTCCTCCCAGGCTGGCTCTGAGGTTGAGAGC
TGTAACTTCAGATGAGGGAACTTGGGCCTAGAGGGAAGGAGTGACAGCTCCAGTCAGATCCCCT
GGAGCTGAGAGCCCTGACTGCCTGCAGGGCCCAGCCTCTTCAACTGGGTCTGGAGTTGGAGTTC
CTTAGAAGAGCTCCCAATGGCGGACCAGAGAATGGACATTTCCTCGACAATCAGTGACTTCATG
TCCCCAGGCCCCACCGACCTGCTCTCCAGCTCCCTTGGCACCAGTGGTGTGGATTGCAACCGCA
AGCGGAAAGGCAGCTCCACTGACTACCAGTTAGAATATACAGAACATCAGGGAAGGATCAAGAA
TGCAAGGGAAGCTCACAGTCAGATTGAAAAGAGGCGTCGGGATAAAATGAACAGTTTTATTGAT
GAATTGGCTTCTTTGGTACCGACATGTAATGCGATGTCCAGGAAATTAGATAAACTGACCGTGC
TAAGGATGGCCGTTCAGCACATGAAAACATTAAGAGGTGCCACCAATCCATATACAGAAGCAAA
CTATAAACCAACTTTTCTATCAGATGATGAATTGAAACACCTCATTCTCAGGGCAGCAGATGGA
TTTTTGTTTGTCGTAGGATGTGACCGAGGGAAGATACTCTTTGTCTCAGAGTCTGTCTTCAAGA
TCCTCAACTATAGCCAGAACGATCTGATTGGTCAGAGTTTGTTTGACTACCTGCACCCTAAAGA
TATCGCCAAAGTCAAGGAGCAGCTCTCCTCCTCTGACACAGCACCCCGGGAGCGGCTCATAGAT
GCAAAAACTGGACTTCCAGTTAAAACAGATATAACCCCTGGGCCGTCTCGATTATGTTCTGGAG
CACGACGTTCTTTCTTCTGTAGGATGAAGTGTAACAGGCCTTCAGTGAAGGTCGAAGACAAGGA
CTTCCCCTCCACCTGTTCAAAGAAAAAAGATCGAAAAAGCTTCTGTACAATCCACAGCACAGGC
TATTTGAAAAGCTGGCCACCCACAAAGATGGGGTTGGATGAAGACAATGAACCAGACAACGAGG
GCTGTAACCTCAGCTGCCTTGTCGCAATTGGACGACTGCATTCTCATGTGGTTCCCCAAACAGT
GAACGGGGAAATCAGGGTGAAATCCATGGAGTACGTTTCTCGGCATGCAATAGATGGGAAATTT
GTCTTTGTAGACCAGAGGGCAACAGCTATTCTGGCATATTTACCACAAGAACTCCTAGGCACAT
CATGTTATGAATATTTTCATCAAGATGACATAGGACATCTTGCAGAATGTCATAGGCAAGTTTT
ACAGACGAGAGACAAGATTACAACTAATTGCTATAAGTTTAAAATCAAAGATGGTTCTTTCATC
ACACTACGAAGTCGATGGTTCAGTTTCATGAACCCCTGGACCAAGGAAGTAGAATACATCGTCT
CAACCAACACTGTTGTTTTAGCCAACGTCCTGGAAGGCGGGGATCCAACCTTCCCGCAGCTCAC
AACGTCCCCTCACAGCATGGACAGCATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGACTCAT
CCTACTGTTCCAGGAATTCCAGGGGGAACCAGGGCTGGGGCAGGAAAAATAGGTCGAATGATTG
CTGAGGAAATCATGGAAATCCACAGGATAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCCC
ATTGAACATTACAAGTACGCCTCCCCCTGATGCCTCCTCTCCAGGAGGCAAGAAGATTTTAAAC
GGAGGGACTCCAGACATTCCTTCCAGTGGCCTACTGCCAGGGCAGGCTCAAGAGAACCCAAGTT
ATCCATATTCTGATAGTTCTTCTATTCTTGGTGAAAACCCCCACATAGGCATAGACATGATAGA
CAACGACCAAGGATCAAGTAGTCCCAGTAATGATGAAGCAGCAATGGCTGTCATCATGAGCCTG
TTGGAAGCAGATGCTGGGCTGGGTGGCCCTGTTGACTTTAGCGACTTGCCATGGCCGCTGTAAA
CACTACATGTTGCTTTGGCAACAGATACAGTATCAAAGTGCATTACTGGTGGAGTTTTACAGTC
TGTGAAGCTTACTGGATAGGGAGAGAACAGCTTTTATGTACTGATCTCATAAAAGCCATCTCAG
AGCCATTGATACAAGTCAATCTTACTATGTGTAACTTCAGACAAAGTGGAACTAAGCCTGCGCC
AGTGTTTCCTCATCATTGATTATTGGGCTAGCTGTGGATAGCTTGCATTAATTGTATATTTTGG
ATTCTGTTTGTGTTGAATTTTTTAATCATTGTGCACAGAAGCATCATTGGTAGCTTTTATATGC
AAATGGTCATTTCAGATGTATGGTGTTTTTACACTACAAAGAAGTCCCCCATGTGGATATTTCT
TATACTAATTGTATCATAAAGCTGTTTATTCTTCCTTGTAAGAATCCTTTACTATAAATATGGG
TTAAAGTATAATGTATTAGACAGTTAAATATTTTTAATAAATGTTTCCCTTGTTCTATAAATAC
TGTTCCCACTTCAAATATTAAGAAAAAAAATTCCTACATGC

hide sequence

RefSeq Acc Id:

XM_021727339 ⟹ XP_021583014

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,163,996 (-)	NCBI
SpeTri2.0	NW_004936528	5,167,655 - 5,197,985 (-)	NCBI

Sequence:

show sequence

AATTTTCCCACTCTCCGTCCACTCTTCTGCATCTGTACGAACTCCTAGGGAGGAAGGCAGCCTA
CATAGAACATTCAAAGGCACATTACATTTTGCTGAGGCAACTGCGTGGGATCTTACCCAAATGT
CCACTTAAGAGGTTTTCTTTTGTTTAATGAGGGAAAATCTCCAAGGAGGTATCCCCCCTACAGC
AGATGTCCTTTCTGCTGAAGTTCACAGGTCGAATTTGGGGAGCACAATGGCTGGAGGTCAGATG
CCCACTAGGAGATGCTATGATTAATATAGAAAGCATGGACACAGACAAAGATGACCCTCATGGA
AGGTTAGAATATACAGAACATCAGGGAAGGATCAAGAATGCAAGGGAAGCTCACAGTCAGATTG
AAAAGAGGCGTCGGGATAAAATGAACAGTTTTATTGATGAATTGGCTTCTTTGGTACCGACATG
TAATGCGATGTCCAGGAAATTAGATAAACTGACCGTGCTAAGGATGGCCGTTCAGCACATGAAA
ACATTAAGAGGTGCCACCAATCCATATACAGAAGCAAACTATAAACCAACTTTTCTATCAGATG
ATGAATTGAAACACCTCATTCTCAGGGCAGCAGATGGATTTTTGTTTGTCGTAGGATGTGACCG
AGGGAAGATACTCTTTGTCTCAGAGTCTGTCTTCAAGATCCTCAACTATAGCCAGAACGATCTG
ATTGGTCAGAGTTTGTTTGACTACCTGCACCCTAAAGATATCGCCAAAGTCAAGGAGCAGCTCT
CCTCCTCTGACACAGCACCCCGGGAGCGGCTCATAGATGCAAAAACTGGACTTCCAGTTAAAAC
AGATATAACCCCTGGGCCGTCTCGATTATGTTCTGGAGCACGACGTTCTTTCTTCTGTAGGATG
AAGTGTAACAGGCCTTCAGTGAAGGTCGAAGACAAGGACTTCCCCTCCACCTGTTCAAAGAAAA
AAGCAGATCGAAAAAGCTTCTGTACAATCCACAGCACAGGCTATTTGAAAAGCTGGCCACCCAC
AAAGATGGGGTTGGATGAAGACAATGAACCAGACAACGAGGGCTGTAACCTCAGCTGCCTTGTC
GCAATTGGACGACTGCATTCTCATGTGGTTCCCCAAACAGTGAACGGGGAAATCAGGGTGAAAT
CCATGGAGTACGTTTCTCGGCATGCAATAGATGGGAAATTTGTCTTTGTAGACCAGAGGGCAAC
AGCTATTCTGGCATATTTACCACAAGAACTCCTAGGCACATCATGTTATGAATATTTTCATCAA
GATGACATAGGACATCTTGCAGAATGTCATAGGCAAGTTTTACAGACGAGAGACAAGATTACAA
CTAATTGCTATAAGTTTAAAATCAAAGATGGTTCTTTCATCACACTACGAAGTCGATGGTTCAG
TTTCATGAACCCCTGGACCAAGGAAGTAGAATACATCGTCTCAACCAACACTGTTGTTTTAGCC
AACGTCCTGGAAGGCGGGGATCCAACCTTCCCGCAGCTCACAACGTCCCCTCACAGCATGGACA
GCATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCTACTGTTCCAGGAATTCCAGG
GGGAACCAGGGCTGGGGCAGGAAAAATAGGTCGAATGATTGCTGAGGAAATCATGGAAATCCAC
AGGATAAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCCCATTGAACATTACAAGTACGCCTC
CCCCTGATGCCTCCTCTCCAGGAGGCAAGAAGATTTTAAACGGAGGGACTCCAGACATTCCTTC
CAGTGGCCTACTGCCAGGGCAGGCTCAAGAGAACCCAAGTTATCCATATTCTGATAGTTCTTCT
ATTCTTGGTGAAAACCCCCACATAGGCATAGACATGATAGACAACGACCAAGGATCAAGTAGTC
CCAGTAATGATGAAGCAGCAATGGCTGTCATCATGAGCCTGTTGGAAGCAGATGCTGGGCTGGG
TGGCCCTGTTGACTTTAGCGACTTGCCATGGCCGCTGTAAACACTACATGTTGCTTTGGCAACA
GATACAGTATCAAAGTGCATTACTGGTGGAGTTTTACAGTCTGTGAAGCTTACTGGATAGGGAG
AGAACAGCTTTTATGTACTGATCTCATAAAAGCCATCTCAGAGCCATTGATACAAGTCAATCTT
ACTATGTGTAACTTCAGACAAAGTGGAACTAAGCCTGCGCCAGTGTTTCCTCATCATTGATTAT
TGGGCTAGCTGTGGATAGCTTGCATTAATTGTATATTTTGGATTCTGTTTGTGTTGAATTTTTT
AATCATTGTGCACAGAAGCATCATTGGTAGCTTTTATATGCAAATGGTCATTTCAGATGTATGG
TGTTTTTACACTACAAAGAAGTCCCCCATGTGGATATTTCTTATACTAATTGTATCATAAAGCT
GTTTATTCTTCCTTGTAAGAATCCTTTACTATAAATATGGGTTAAAGTATAATGTATTAGACAG
TTAAATATTTTTAATAAATGTTTCCCTTGTTCTATAAA

hide sequence

RefSeq Acc Id:

XM_021727340 ⟹ XP_021583015

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,164,703 (-)	NCBI
SpeTri2.0	NW_004936528	5,167,611 - 5,198,625 (-)	NCBI

Sequence:

show sequence

CCACCGACCTGCTCTCCAGCTCCCTTGGCACCAGTGGTGTGGATTGCAACCGCAAGCGGAAAGG
CAGCTCCACTGACTACCATTCACAGGTCGAATTTGGGGAGCACAATGGCTGGAGGTCAGATGCC
CACTAGGAGATGCTATGATTAATATAGAAAGCATGGACACAGACAAAGATGACCCTCATGGAAG
GTTAGAATATACAGAACATCAGGGAAGGATCAAGAATGCAAGGGAAGCTCACAGTCAGATTGAA
AAGAGGCGTCGGGATAAAATGAACAGTTTTATTGATGAATTGGCTTCTTTGGTACCGACATGTA
ATGCGATGTCCAGGAAATTAGATAAACTGACCGTGCTAAGGATGGCCGTTCAGCACATGAAAAC
ATTAAGAGGTGCCACCAATCCATATACAGAAGCAAACTATAAACCAACTTTTCTATCAGATGAT
GAATTGAAACACCTCATTCTCAGGGCAGCAGATGGATTTTTGTTTGTCGTAGGATGTGACCGAG
GGAAGATACTCTTTGTCTCAGAGTCTGTCTTCAAGATCCTCAACTATAGCCAGAACGATCTGAT
TGGTCAGAGTTTGTTTGACTACCTGCACCCTAAAGATATCGCCAAAGTCAAGGAGCAGCTCTCC
TCCTCTGACACAGCACCCCGGGAGCGGCTCATAGATGCAAAAACTGGACTTCCAGTTAAAACAG
ATATAACCCCTGGGCCGTCTCGATTATGTTCTGGAGCACGACGTTCTTTCTTCTGTAGGATGAA
GTGTAACAGGCCTTCAGTGAAGGTCGAAGACAAGGACTTCCCCTCCACCTGTTCAAAGAAAAAA
GATCGAAAAAGCTTCTGTACAATCCACAGCACAGGCTATTTGAAAAGCTGGCCACCCACAAAGA
TGGGGTTGGATGAAGACAATGAACCAGACAACGAGGGCTGTAACCTCAGCTGCCTTGTCGCAAT
TGGACGACTGCATTCTCATGTGGTTCCCCAAACAGTGAACGGGGAAATCAGGGTGAAATCCATG
GAGTACGTTTCTCGGCATGCAATAGATGGGAAATTTGTCTTTGTAGACCAGAGGGCAACAGCTA
TTCTGGCATATTTACCACAAGAACTCCTAGGCACATCATGTTATGAATATTTTCATCAAGATGA
CATAGGACATCTTGCAGAATGTCATAGGCAAGTTTTACAGACGAGAGACAAGATTACAACTAAT
TGCTATAAGTTTAAAATCAAAGATGGTTCTTTCATCACACTACGAAGTCGATGGTTCAGTTTCA
TGAACCCCTGGACCAAGGAAGTAGAATACATCGTCTCAACCAACACTGTTGTTTTAGCCAACGT
CCTGGAAGGCGGGGATCCAACCTTCCCGCAGCTCACAACGTCCCCTCACAGCATGGACAGCATG
CTGCCCTCTGGAGAAGGTGGCCCAAAGAGGACTCATCCTACTGTTCCAGGAATTCCAGGGGGAA
CCAGGGCTGGGGCAGGAAAAATAGGTCGAATGATTGCTGAGGAAATCATGGAAATCCACAGGAT
AAGAGGGTCATCGCCTTCCAGCTGTGGCTCCAGCCCATTGAACATTACAAGTACGCCTCCCCCT
GATGCCTCCTCTCCAGGAGGCAAGAAGATTTTAAACGGAGGGACTCCAGACATTCCTTCCAGTG
GCCTACTGCCAGGGCAGGCTCAAGAGAACCCAAGTTATCCATATTCTGATAGTTCTTCTATTCT
TGGTGAAAACCCCCACATAGGCATAGACATGATAGACAACGACCAAGGATCAAGTAGTCCCAGT
AATGATGAAGCAGCAATGGCTGTCATCATGAGCCTGTTGGAAGCAGATGCTGGGCTGGGTGGCC
CTGTTGACTTTAGCGACTTGCCATGGCCGCTGTAAACACTACATGTTGCTTTGGCAACAGATAC
AGTATCAAAGTGCATTACTGGTGGAGTTTTACAGTCTGTGAAGCTTACTGGATAGGGAGAGAAC
AGCTTTTATGTACTGATCTCATAAAAGCCATCTCAGAGCCATTGATACAAGTCAATCTTACTAT
GTGTAACTTCAGACAAAGTGGAACTAAGCCTGCGCCAGTGTTTCCTCATCATTGATTATTGGGC
TAGCTGTGGATAGCTTGCATTAATTGTATATTTTGGATTCTGTTTGTGTTGAATTTTTTAATCA
TTGTGCACAGAAGCATCATTGGTAGCTTTTATATGCAAATGGTCATTTCAGATGTATGGTGTTT
TTACACTACAAAGAAGTCCCCCATGTGGATATTTCTTATACTAATTGTATCATAAAGCTGTTTA
TTCTTCCTTGTAAGAATCCTTTACTATAAATATGGGTTAAAGTATAATGTATTAGACAGTTAAA
TATTTTTAATAAATGTTTCCCTTGTTCTATAAATACTGTTCCCACTTCAAATATTAAGAAAAAA
AATTCCTACATGC

hide sequence

RefSeq Acc Id:

XM_040284716 ⟹ XP_040140650

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI

RefSeq Acc Id:

XM_040284717 ⟹ XP_040140651

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,174,553 (-)	NCBI

RefSeq Acc Id:

XM_040284718 ⟹ XP_040140652

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,178,024 (-)	NCBI

RefSeq Acc Id:

XM_040284719 ⟹ XP_040140653

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,199,029 (-)	NCBI

RefSeq Acc Id:

XM_040284720 ⟹ XP_040140654

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI

RefSeq Acc Id:

XM_040284721 ⟹ XP_040140655

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI

RefSeq Acc Id:

XM_040284722 ⟹ XP_040140656

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI

RefSeq Acc Id:

XM_040284723 ⟹ XP_040140657

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI

RefSeq Acc Id:

XM_040284724 ⟹ XP_040140658

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,231,340 (-)	NCBI

RefSeq Acc Id:

XM_040284725 ⟹ XP_040140659

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,164,703 (-)	NCBI

RefSeq Acc Id:

XM_040284726 ⟹ XP_040140660

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	49,133,675 - 49,164,703 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005326843	(Get FASTA)	NCBI Sequence Viewer
	XP_013214802	(Get FASTA)	NCBI Sequence Viewer
	XP_013214803	(Get FASTA)	NCBI Sequence Viewer
	XP_021583010	(Get FASTA)	NCBI Sequence Viewer
	XP_021583011	(Get FASTA)	NCBI Sequence Viewer
	XP_021583012	(Get FASTA)	NCBI Sequence Viewer
	XP_021583013	(Get FASTA)	NCBI Sequence Viewer
	XP_021583014	(Get FASTA)	NCBI Sequence Viewer
	XP_021583015	(Get FASTA)	NCBI Sequence Viewer
	XP_040140650	(Get FASTA)	NCBI Sequence Viewer
	XP_040140651	(Get FASTA)	NCBI Sequence Viewer
	XP_040140652	(Get FASTA)	NCBI Sequence Viewer
	XP_040140653	(Get FASTA)	NCBI Sequence Viewer
	XP_040140654	(Get FASTA)	NCBI Sequence Viewer
	XP_040140655	(Get FASTA)	NCBI Sequence Viewer
	XP_040140656	(Get FASTA)	NCBI Sequence Viewer
	XP_040140657	(Get FASTA)	NCBI Sequence Viewer
	XP_040140658	(Get FASTA)	NCBI Sequence Viewer
	XP_040140659	(Get FASTA)	NCBI Sequence Viewer
	XP_040140660	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000016211.2
	ENSSTOP00000031511.1
GenBank Protein	KAG3285692	(Get FASTA)	NCBI Sequence Viewer
	KAG3285693	(Get FASTA)	NCBI Sequence Viewer
	KAG3285694	(Get FASTA)	NCBI Sequence Viewer
	KAG3285695	(Get FASTA)	NCBI Sequence Viewer
	KAG3285696	(Get FASTA)	NCBI Sequence Viewer
	KAG3285697	(Get FASTA)	NCBI Sequence Viewer
	KAG3285698	(Get FASTA)	NCBI Sequence Viewer
	KAG3285699	(Get FASTA)	NCBI Sequence Viewer
	KAG3285700	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013214802 ⟸ XM_013359348
- Peptide Label:	isoform X7
- UniProtKB:	A0A287DDE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADQRMDISSTISDFMSPGPTDLLSSSLGTSGVDCNRKRKGSSTDYQESMDTDKDDPHGRLEYT EHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA TNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSL FDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRP SVKVEDKDFPSTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCLVAIGRL HSHVVPQTVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGH LAECHRQVLQTRDKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVLEG GDPTFPQLTTSPHSMDSMLPSGEGGPKRTHPTVPGIPGGTRAGAGKIGRMIAEEIMEIHRIRGS SPSSCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSSGLLPGQAQENPSYPYSDSSSILGEN PHIGIDMIDNDQGSSSPSNDEAAMAVIMSLLEADAGLGGPVDFSDLPWPL hide sequence

RefSeq Acc Id:

XP_005326843 ⟸ XM_005326786

- Peptide Label:

isoform X15

- Sequence:

show sequence

MINIESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSR
KLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILF
VSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPG
PSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLD
EDNEPDNEGCNLSCLVAIGRLHSHVVPQTVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAY
LPQELLGTSCYEYFHQDDIGHLAECHRQVLQTRDKITTNCYKFKIKDGSFITLRSRWFSFMNPW
TKEVEYIVSTNTVVLANVLEGGDPTFPQLTTSPHSMDSMLPSGEGGPKRTHPTVPGIPGGTRAG
AGKIGRMIAEEIMEIHRIRGSSPSSCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSSGLLP
GQAQENPSYPYSDSSSILGENPHIGIDMIDNDQGSSSPSNDEAAMAVIMSLLEADAGLGGPVDF
SDLPWPL

hide sequence

RefSeq Acc Id:

XP_013214803 ⟸ XM_013359349

- Peptide Label:

isoform X8

- Sequence:

show sequence

MADQRMDISSTISDFMSPGPTDLLSSSLGTSGVDCNRKRKGSSTDYQESMDTDKDDPHGRLEYT
EHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA
TNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSL
FDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRP
SVKVEDKDFPSTCSKKKDRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCLVAIGRLH
SHVVPQTVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHL
AECHRQVLQTRDKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVLEGG
DPTFPQLTTSPHSMDSMLPSGEGGPKRTHPTVPGIPGGTRAGAGKIGRMIAEEIMEIHRIRGSS
PSSCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSSGLLPGQAQENPSYPYSDSSSILGENP
HIGIDMIDNDQGSSSPSNDEAAMAVIMSLLEADAGLGGPVDFSDLPWPL

hide sequence

RefSeq Acc Id:

XP_021583013 ⟸ XM_021727338

- Peptide Label:

isoform X11

- Sequence:

show sequence

MADQRMDISSTISDFMSPGPTDLLSSSLGTSGVDCNRKRKGSSTDYQLEYTEHQGRIKNAREAH
SQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTF
LSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVK
EQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTC
SKKKDRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCLVAIGRLHSHVVPQTVNGEIR
VKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTRDK
ITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVLEGGDPTFPQLTTSPHS
MDSMLPSGEGGPKRTHPTVPGIPGGTRAGAGKIGRMIAEEIMEIHRIRGSSPSSCGSSPLNITS
TPPPDASSPGGKKILNGGTPDIPSSGLLPGQAQENPSYPYSDSSSILGENPHIGIDMIDNDQGS
SSPSNDEAAMAVIMSLLEADAGLGGPVDFSDLPWPL

hide sequence

RefSeq Acc Id:

XP_021583011 ⟸ XM_021727336

- Peptide Label:

isoform X4

- Sequence:

show sequence

MADQRMDISSTISDFMSPGPTDLLSSSLGTSGVDCNRKRKGSSTDYQLDDFSFEESMDTDKDDP
HGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQH
MKTLRGATNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQN
DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFC
RMKCNRPSVKVEDKDFPSTCSKKKDRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCL
VAIGRLHSHVVPQTVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFH
QDDIGHLAECHRQVLQTRDKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVL
ANVLEGGDPTFPQLTTSPHSMDSMLPSGEGGPKRTHPTVPGIPGGTRAGAGKIGRMIAEEIMEI
HRIRGSSPSSCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSSGLLPGQAQENPSYPYSDSS
SILGENPHIGIDMIDNDQGSSSPSNDEAAMAVIMSLLEADAGLGGPVDFSDLPWPL

hide sequence

RefSeq Acc Id:	XP_021583010 ⟸ XM_021727335
- Peptide Label:	isoform X3
- UniProtKB:	I3MVR6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADQRMDISSTISDFMSPGPTDLLSSSLGTSGVDCNRKRKGSSTDYQLDDFSFEESMDTDKDDP HGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQH MKTLRGATNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQN DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFC RMKCNRPSVKVEDKDFPSTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSC LVAIGRLHSHVVPQTVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYF HQDDIGHLAECHRQVLQTRDKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVV LANVLEGGDPTFPQLTTSPHSMDSMLPSGEGGPKRTHPTVPGIPGGTRAGAGKIGRMIAEEIME IHRIRGSSPSSCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSSGLLPGQAQENPSYPYSDS SSILGENPHIGIDMIDNDQGSSSPSNDEAAMAVIMSLLEADAGLGGPVDFSDLPWPL hide sequence

RefSeq Acc Id:

XP_021583015 ⟸ XM_021727340

- Peptide Label:

isoform X16

- Sequence:

show sequence

MINIESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSR
KLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTFLSDDELKHLILRAADGFLFVVGCDRGKILF
VSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPG
PSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTCSKKKDRKSFCTIHSTGYLKSWPPTKMGLDE
DNEPDNEGCNLSCLVAIGRLHSHVVPQTVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYL
PQELLGTSCYEYFHQDDIGHLAECHRQVLQTRDKITTNCYKFKIKDGSFITLRSRWFSFMNPWT
KEVEYIVSTNTVVLANVLEGGDPTFPQLTTSPHSMDSMLPSGEGGPKRTHPTVPGIPGGTRAGA
GKIGRMIAEEIMEIHRIRGSSPSSCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSSGLLPG
QAQENPSYPYSDSSSILGENPHIGIDMIDNDQGSSSPSNDEAAMAVIMSLLEADAGLGGPVDFS
DLPWPL

hide sequence

RefSeq Acc Id:

XP_021583012 ⟸ XM_021727337

- Peptide Label:

isoform X10

- Sequence:

show sequence

MADQRMDISSTISDFMSPGPTDLLSSSLGTSGVDCNRKRKGSSTDYQLEYTEHQGRIKNAREAH
SQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTF
LSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVK
EQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTC
SKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCLVAIGRLHSHVVPQTVNGEI
RVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTRD
KITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVLEGGDPTFPQLTTSPH
SMDSMLPSGEGGPKRTHPTVPGIPGGTRAGAGKIGRMIAEEIMEIHRIRGSSPSSCGSSPLNIT
STPPPDASSPGGKKILNGGTPDIPSSGLLPGQAQENPSYPYSDSSSILGENPHIGIDMIDNDQG
SSSPSNDEAAMAVIMSLLEADAGLGGPVDFSDLPWPL

hide sequence

RefSeq Acc Id:

XP_021583014 ⟸ XM_021727339

- Peptide Label:

isoform X12

- Sequence:

show sequence

MSFLLKFTGRIWGAQWLEVRCPLGDAMINIESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIE
KRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTFLSDD
ELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLS
SSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTCSKKK
ADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCLVAIGRLHSHVVPQTVNGEIRVKS
MEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTRDKITT
NCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVLEGGDPTFPQLTTSPHSMDS
MLPSGEGGPKRTHPTVPGIPGGTRAGAGKIGRMIAEEIMEIHRIRGSSPSSCGSSPLNITSTPP
PDASSPGGKKILNGGTPDIPSSGLLPGQAQENPSYPYSDSSSILGENPHIGIDMIDNDQGSSSP
SNDEAAMAVIMSLLEADAGLGGPVDFSDLPWPL

hide sequence

RefSeq Acc Id:	XP_040140658 ⟸ XM_040284724
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_040140657 ⟸ XM_040284723
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_040140656 ⟸ XM_040284722
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_040140655 ⟸ XM_040284721
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040140650 ⟸ XM_040284716
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040140654 ⟸ XM_040284720
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040140653 ⟸ XM_040284719
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040140652 ⟸ XM_040284718
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040140651 ⟸ XM_040284717
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040140660 ⟸ XM_040284726
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_040140659 ⟸ XM_040284725
- Peptide Label:	isoform X13

RefSeq Acc Id:

ENSSTOP00000016211 ⟸ ENSSTOT00000026164

RefSeq Acc Id:

ENSSTOP00000031511 ⟸ ENSSTOT00000036526

Protein Domains

bHLH PAS

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000022144	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000026164.2	UniProtKB/TrEMBL
	ENSSTOT00000036526.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
	PAS domain	UniProtKB/TrEMBL
InterPro	bHLH_dom	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
	Nuc_translocat	UniProtKB/TrEMBL
	PAC	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
	PAS-like_dom_sf	UniProtKB/TrEMBL
	PAS_fold	UniProtKB/TrEMBL
NCBI Gene	Arntl	ENTREZGENE
PANTHER	ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR-LIKE PROTEIN 1	UniProtKB/TrEMBL
	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	UniProtKB/TrEMBL
Pfam	HLH	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
	PAS_11	UniProtKB/TrEMBL
PRINTS	NCTRNSLOCATR	UniProtKB/TrEMBL
PROSITE	BHLH	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
SMART	HLH	UniProtKB/TrEMBL
	PAC	UniProtKB/TrEMBL
	PAS	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47459	UniProtKB/TrEMBL
	SSF55785	UniProtKB/TrEMBL
UniProt	A0A287DDE1	ENTREZGENE, UniProtKB/TrEMBL
	I3MVR6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-07-26	Bmal1	basic helix-loop-helix ARNT like 1	Arntl	aryl hydrocarbon receptor nuclear translocator like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI