Ehbp1l1 (EH domain binding protein 1 like 1) - Rat Genome Database

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Gene: Ehbp1l1 (EH domain binding protein 1 like 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ehbp1l1
Name: EH domain binding protein 1 like 1
RGD ID: 12450464
Description: INVOLVED IN actin cytoskeleton organization (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); genetic disease (ortholog); FOUND IN filamentous actin (inferred); microtubule organizing center (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EH domain binding protein 1 like 1, transcript variant X1; EH domain binding protein 1 like 1, transcript variant X2; EH domain binding protein 1 like 1, transcript variant X3; EH domain binding protein 1 like 1, transcript variant X4; EH domain-binding protein 1-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,424,836 - 7,440,368 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,867,005 - 3,882,732 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,867,185 - 3,882,712 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ehbp1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,424,836 - 7,440,368 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,867,005 - 3,882,732 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,867,185 - 3,882,712 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EHBP1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,576,053 - 65,592,650 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,576,046 - 65,592,650 (+)EnsemblGRCh38hg38GRCh38
GRCh371165,343,524 - 65,360,121 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,100,085 - 65,116,692 (+)NCBINCBI36Build 36hg18NCBI36
Celera1162,670,174 - 62,686,826 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,670,490 - 61,687,082 (+)NCBIHuRef
CHM1_11165,227,406 - 65,244,013 (+)NCBICHM1_1
T2T-CHM13v2.01165,570,286 - 65,586,883 (+)NCBIT2T-CHM13v2.0
Ehbp1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,757,397 - 5,776,504 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,757,404 - 5,776,345 (-)EnsemblGRCm39 Ensembl
GRCm38195,707,369 - 5,726,576 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,707,376 - 5,726,317 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,707,369 - 5,726,317 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,708,049 - 5,726,270 (-)NCBIMGSCv36mm8
Celera195,577,419 - 5,596,367 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Ehbp1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,423,444 - 212,444,357 (-)NCBIGRCr8
mRatBN7.21202,994,115 - 203,014,320 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,994,118 - 203,014,270 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,346,682 - 211,366,954 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,439,512 - 218,459,668 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,130,558 - 211,150,712 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,061,878 - 221,084,423 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,062,147 - 221,084,129 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,997,200 - 228,017,390 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,331,747 - 208,353,714 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,529,858 - 200,549,849 (-)NCBICelera
Cytogenetic Map1q43NCBI
Ehbp1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542219,670,778 - 19,689,008 (-)NCBIChiLan1.0ChiLan1.0
EHBP1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,805,762 - 66,822,356 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,848,529 - 67,865,112 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,935,156 - 60,951,756 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,272,237 - 64,286,297 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,273,027 - 64,285,950 (+)Ensemblpanpan1.1panPan2
EHBP1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,613,465 - 51,630,589 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,614,425 - 51,630,315 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,220,843 - 50,238,929 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,649,609 - 52,667,675 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,651,576 - 52,667,446 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,749,501 - 51,767,582 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,323,541 - 51,341,612 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,113,942 - 52,131,994 (-)NCBIUU_Cfam_GSD_1.0
EHBP1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,662,463 - 6,678,888 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,662,460 - 6,678,721 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,865,120 - 5,881,490 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EHBP1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,648,318 - 8,664,990 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18,648,641 - 8,664,759 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,943,058 - 105,959,722 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ehbp1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476720,800,254 - 20,821,165 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000027262   ⟹   ENSSTOP00000021643
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365993,867,005 - 3,882,732 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000031833   ⟹   ENSSTOP00000032032
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365993,867,651 - 3,882,435 (-)Ensembl
RefSeq Acc Id: XM_013362041   ⟹   XP_013217495
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,424,836 - 7,440,367 (-)NCBI
SpeTri2.0NW_0049365993,867,185 - 3,882,712 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040284120   ⟹   XP_040140054
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,424,836 - 7,440,368 (-)NCBI
RefSeq Acc Id: XM_040284121   ⟹   XP_040140055
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,424,836 - 7,440,368 (-)NCBI
RefSeq Acc Id: XM_040284122   ⟹   XP_040140056
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,424,836 - 7,440,368 (-)NCBI
RefSeq Acc Id: XM_040284123   ⟹   XP_040140057
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,424,836 - 7,440,367 (-)NCBI
RefSeq Acc Id: XM_040284124   ⟹   XP_040140058
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,424,836 - 7,440,366 (-)NCBI
RefSeq Acc Id: XM_040284125   ⟹   XP_040140059
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,424,836 - 7,440,366 (-)NCBI
RefSeq Acc Id: XM_040284126   ⟹   XP_040140060
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,424,836 - 7,440,366 (-)NCBI
RefSeq Acc Id: XM_040284127   ⟹   XP_040140061
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,424,836 - 7,440,365 (-)NCBI
RefSeq Acc Id: XM_040284128   ⟹   XP_040140062
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,424,836 - 7,440,365 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013217495   ⟸   XM_013362041
- Peptide Label: isoform X2
- UniProtKB: I3NB96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140055   ⟸   XM_040284121
- Peptide Label: isoform X3
- UniProtKB: I3NB96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140056   ⟸   XM_040284122
- Peptide Label: isoform X4
- UniProtKB: I3NB96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140054   ⟸   XM_040284120
- Peptide Label: isoform X1
- UniProtKB: I3NB96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140057   ⟸   XM_040284123
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040140060   ⟸   XM_040284126
- Peptide Label: isoform X8
- UniProtKB: A0A287DER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140059   ⟸   XM_040284125
- Peptide Label: isoform X7
- UniProtKB: A0A287DER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140058   ⟸   XM_040284124
- Peptide Label: isoform X6
- UniProtKB: A0A287DER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140062   ⟸   XM_040284128
- Peptide Label: isoform X10
- UniProtKB: A0A287DER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140061   ⟸   XM_040284127
- Peptide Label: isoform X9
- UniProtKB: A0A287DER1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000032032   ⟸   ENSSTOT00000031833
RefSeq Acc Id: ENSSTOP00000021643   ⟸   ENSSTOT00000027262
Protein Domains
bMERB   C2 NT-type   Calponin-homology (CH)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025958 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027262.2 UniProtKB/TrEMBL
  ENSSTOT00000031833.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
InterPro bMERB_dom UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  NT-C2 UniProtKB/TrEMBL
NCBI Gene Ehbp1l1 ENTREZGENE
PANTHER CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED UniProtKB/TrEMBL
  PTHR23167:SF42 UniProtKB/TrEMBL
Pfam DUF3585 UniProtKB/TrEMBL
  NT-C2 UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PROSITE BMERB UniProtKB/TrEMBL
  C2_NT UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART DUF3585 UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/TrEMBL
UniProt A0A287DER1 ENTREZGENE, UniProtKB/TrEMBL
  I3NB96 ENTREZGENE, UniProtKB/TrEMBL