Zbtb37 (zinc finger and BTB domain containing 37) - Rat Genome Database

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Gene: Zbtb37 (zinc finger and BTB domain containing 37) Ictidomys tridecemlineatus
Analyze
Symbol: Zbtb37
Name: zinc finger and BTB domain containing 37
RGD ID: 12449012
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); sequence-specific double-stranded DNA binding (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); antithrombin III deficiency (ortholog); autoimmune lymphoproliferative syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain containing 37, transcript variant X1; zinc finger and BTB domain containing 37, transcript variant X2; zinc finger and BTB domain containing 37, transcript variant X3; zinc finger and BTB domain containing 37, transcript variant X4; zinc finger and BTB domain containing 37, transcript variant X5; zinc finger and BTB domain containing 37, transcript variant X6; zinc finger and BTB domain containing 37, transcript variant X7; zinc finger and BTB domain-containing protein 37
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934496,147,468 - 96,174,115 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648114,009,281 - 14,021,139 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648113,986,826 - 14,020,854 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zbtb37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934496,147,468 - 96,174,115 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648114,009,281 - 14,021,139 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648113,986,826 - 14,020,854 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB37
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381173,868,082 - 173,903,547 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1173,868,082 - 173,903,547 (+)EnsemblGRCh38hg38GRCh38
GRCh371173,837,220 - 173,872,685 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361172,104,155 - 172,109,404 (+)NCBINCBI36Build 36hg18NCBI36
Build 341170,569,188 - 170,574,433NCBI
Celera1146,946,962 - 146,965,241 (+)NCBICelera
Cytogenetic Map1q25.1NCBI
HuRef1145,062,448 - 145,080,895 (+)NCBIHuRef
CHM1_11175,259,934 - 175,278,214 (+)NCBICHM1_1
T2T-CHM13v2.01173,226,202 - 173,261,663 (+)NCBIT2T-CHM13v2.0
Zbtb37
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391160,830,492 - 160,862,432 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1160,830,492 - 160,862,419 (-)EnsemblGRCm39 Ensembl
GRCm381161,002,922 - 161,034,864 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,002,922 - 161,034,849 (-)EnsemblGRCm38mm10GRCm38
MGSCv371162,947,887 - 162,964,390 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,854,433 - 162,870,936 (-)NCBIMGSCv36mm8
Celera1163,457,720 - 163,474,100 (-)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.75NCBI
Zbtb37
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81375,805,272 - 75,836,702 (-)NCBIGRCr8
mRatBN7.21373,271,920 - 73,303,427 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1373,280,544 - 73,337,124 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1375,881,077 - 75,895,958 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01377,165,403 - 77,180,290 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01374,424,950 - 74,439,837 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01378,836,491 - 78,852,224 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1378,836,587 - 78,852,182 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01383,728,672 - 83,747,221 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41376,579,611 - 76,594,418 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11376,593,449 - 76,608,091 (-)NCBI
Celera1373,076,776 - 73,091,672 (-)NCBICelera
Cytogenetic Map13q22NCBI
Zbtb37
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540614,000,282 - 14,011,645 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540614,000,003 - 14,028,673 (+)NCBIChiLan1.0ChiLan1.0
ZBTB37
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2175,822,217 - 75,857,813 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1175,496,248 - 75,531,841 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01149,386,001 - 149,406,436 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11153,090,485 - 153,109,767 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1153,090,898 - 153,109,767 (+)Ensemblpanpan1.1panPan2
ZBTB37
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1725,333,540 - 25,362,098 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl725,349,786 - 25,361,439 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha724,866,669 - 24,895,818 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0725,084,379 - 25,113,591 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl725,100,658 - 25,112,286 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1725,004,210 - 25,033,391 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0725,100,925 - 25,115,305 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0725,231,103 - 25,260,308 (-)NCBIUU_Cfam_GSD_1.0
ZBTB37
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9116,149,293 - 116,181,689 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19116,149,234 - 116,179,437 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29127,783,685 - 127,800,467 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB37
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12555,304,954 - 55,323,670 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2555,306,282 - 55,323,162 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605556,850,437 - 56,885,062 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb37
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247717,980,922 - 7,995,017 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247717,958,343 - 7,995,351 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000027516   ⟹   ENSSTOP00000021704
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648114,009,281 - 14,021,139 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000035575   ⟹   ENSSTOP00000029456
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648114,010,420 - 14,019,034 (-)Ensembl
RefSeq Acc Id: XM_005319787   ⟹   XP_005319844
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934496,161,845 - 96,174,115 (-)NCBI
SpeTri2.0NW_00493648114,006,008 - 14,020,854 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021722646   ⟹   XP_021578321
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934496,161,845 - 96,174,085 (-)NCBI
SpeTri2.0NW_00493648113,998,037 - 14,020,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040277476   ⟹   XP_040133410
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934496,161,845 - 96,174,069 (-)NCBI
RefSeq Acc Id: XR_005730537
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934496,147,468 - 96,174,069 (-)NCBI
RefSeq Acc Id: XR_005730538
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934496,147,468 - 96,174,069 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005319844   ⟸   XM_005319787
- Sequence:
RefSeq Acc Id: XP_021578321   ⟸   XM_021722646
- Sequence:
RefSeq Acc Id: XP_040133410   ⟸   XM_040277476
RefSeq Acc Id: ENSSTOP00000021704   ⟸   ENSSTOT00000027516
RefSeq Acc Id: ENSSTOP00000029456   ⟸   ENSSTOT00000035575
Protein Domains
BTB   C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022488 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027516.2 UniProtKB/TrEMBL
  ENSSTOT00000035575.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zbtb37 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING 37 UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A287D7G7_ICTTR UniProtKB/TrEMBL
  I3NBF7_ICTTR UniProtKB/TrEMBL