Syt3 (synaptotagmin 3) - Rat Genome Database

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Gene: Syt3 (synaptotagmin 3) Ictidomys tridecemlineatus
Analyze
Symbol: Syt3
Name: synaptotagmin 3
RGD ID: 12448799
Description: ENCODES a protein that exhibits calcium-dependent phospholipid binding (ortholog); clathrin binding (ortholog); identical protein binding (ortholog); INVOLVED IN positive regulation of dendrite extension (ortholog); positive regulation of vesicle fusion (ortholog); regulation of calcium ion-dependent exocytosis (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endosome (ortholog); postsynapse (ortholog); synaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptotagmin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,528,529 - 22,535,901 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936889404,534 - 411,885 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Syt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,528,529 - 22,535,901 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936889404,534 - 411,885 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,621,977 - 50,658,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1950,621,307 - 50,639,881 (-)EnsemblGRCh38hg38GRCh38
GRCh371951,125,234 - 51,143,138 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,817,046 - 55,833,114 (-)NCBINCBI36Build 36hg18NCBI36
Build 341955,817,047 - 55,833,114NCBI
Celera1948,176,610 - 48,194,391 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1947,460,206 - 47,478,096 (-)NCBIHuRef
CHM1_11951,127,112 - 51,144,886 (-)NCBICHM1_1
T2T-CHM13v2.01953,710,730 - 53,746,830 (-)NCBIT2T-CHM13v2.0
Syt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,032,197 - 44,049,454 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,033,526 - 44,049,611 (+)EnsemblGRCm39 Ensembl
GRCm38744,382,773 - 44,400,030 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,384,102 - 44,400,187 (+)EnsemblGRCm38mm10GRCm38
MGSCv37751,639,496 - 51,655,400 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,252,863 - 44,268,071 (+)NCBIMGSCv36mm8
Celera739,842,838 - 39,858,700 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.83NCBI
Syt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,017,341 - 104,032,046 (+)NCBIGRCr8
mRatBN7.2194,880,835 - 94,895,518 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl194,881,247 - 94,895,246 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,266,994 - 100,280,654 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01108,739,638 - 108,753,304 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,030,066 - 102,043,728 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,379,236 - 100,407,862 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,379,186 - 100,408,083 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,459,003 - 101,473,576 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4194,866,807 - 94,880,457 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1194,944,917 - 94,958,568 (+)NCBI
Celera189,144,345 - 89,157,982 (+)NCBICelera
RH 3.4 Map1904.6RGD
Cytogenetic Map1q22NCBI
Syt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955559580,453 - 593,109 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955559580,453 - 591,938 (+)NCBIChiLan1.0ChiLan1.0
SYT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,688,417 - 56,706,568 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11958,601,704 - 58,627,689 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01947,585,801 - 47,604,094 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11956,486,894 - 56,522,803 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1956,486,894 - 56,503,574 (-)Ensemblpanpan1.1panPan2
SYT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,145,524 - 106,160,942 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,145,356 - 106,160,942 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,719,785 - 105,735,219 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01106,657,430 - 106,672,865 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1106,657,419 - 106,672,863 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,329,543 - 106,344,979 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01105,971,127 - 105,986,557 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01106,811,745 - 106,827,186 (+)NCBIUU_Cfam_GSD_1.0
SYT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,417,951 - 55,434,175 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,417,949 - 55,449,322 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,316,981 - 51,336,155 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,678,535 - 43,698,347 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl643,677,790 - 43,697,766 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607323,694,790 - 23,713,460 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248323,991,491 - 4,003,608 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248323,991,289 - 4,003,608 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040279001   ⟹   XP_040134935
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934922,528,529 - 22,535,901 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040134935 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3256585 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040134935   ⟸   XM_040279001


Additional Information

Database Acc Id Source(s)
NCBI Gene Syt3 ENTREZGENE