Gdf3 (growth differentiation factor 3) - Rat Genome Database

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Gene: Gdf3 (growth differentiation factor 3) Ictidomys tridecemlineatus
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Symbol: Gdf3
Name: growth differentiation factor 3
RGD ID: 12448497
Description: ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN endoderm development (ortholog); eye development (ortholog); formation of anatomical boundary (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Germ Cell and Embryonal Neoplasms (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: growth/differentiation factor 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494598,790,269 - 98,799,229 (-)NCBI
SpeTri2.0NW_0049378478,179 - 16,783 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gdf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494598,790,269 - 98,799,229 (-)NCBI
SpeTri2.0NW_0049378478,179 - 16,783 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GDF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl127,689,784 - 7,695,775 (-)EnsemblGRCh38hg38GRCh38
GRCh38127,689,784 - 7,695,775 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37127,842,380 - 7,848,371 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,733,648 - 7,739,627 (-)NCBINCBI36hg18NCBI36
Build 34127,733,647 - 7,739,627NCBI
Celera129,419,392 - 9,425,368 (-)NCBI
Cytogenetic Map12p13.31NCBI
HuRef127,656,489 - 7,662,465 (-)NCBIHuRef
CHM1_1127,839,618 - 7,847,334 (-)NCBICHM1_1
Gdf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,582,362 - 122,587,046 (-)NCBIGRCm39mm39
GRCm39 Ensembl6122,582,362 - 122,587,046 (-)Ensembl
GRCm386122,605,403 - 122,610,087 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,605,403 - 122,610,087 (-)EnsemblGRCm38mm10GRCm38
MGSCv376122,555,421 - 122,560,089 (-)NCBIGRCm37mm9NCBIm37
MGSCv366122,571,022 - 122,575,690 (-)NCBImm8
Celera6124,400,537 - 124,405,205 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.7NCBI
Gdf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24155,831,572 - 155,835,953 (-)NCBI
Rnor_6.0 Ensembl4155,417,004 - 155,421,998 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04155,417,667 - 155,422,014 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04222,441,866 - 222,445,551 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,064,054 - 159,067,854 (-)NCBIRGSC3.4rn4RGSC3.4
Celera4144,650,730 - 144,655,147 (-)NCBICelera
Cytogenetic Map4q42NCBI
Gdf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554136,493,734 - 6,516,315 (-)NCBIChiLan1.0ChiLan1.0
GDF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1127,972,941 - 7,979,654 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,972,907 - 7,979,815 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0127,813,288 - 7,819,418 (-)NCBIMhudiblu_PPA_v0panPan3
GDF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,125,845 - 37,129,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,125,928 - 37,129,484 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,486,781 - 9,490,505 (+)NCBI
ROS_Cfam_1.02737,475,220 - 37,478,894 (-)NCBI
UMICH_Zoey_3.12737,356,251 - 37,359,922 (-)NCBI
UNSW_CanFamBas_1.02737,391,174 - 37,394,862 (-)NCBI
UU_Cfam_GSD_1.0278,972,861 - 8,976,557 (+)NCBI
GDF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl562,835,979 - 62,841,665 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1562,835,926 - 62,841,827 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,666,056 - 65,672,100 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GDF3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,727,818 - 7,733,514 (-)NCBI
ChlSab1.1 Ensembl117,727,913 - 7,733,075 (-)Ensembl
Gdf3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248604,968,624 - 4,970,362 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013366479   ⟹   XP_013221933
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049378478,179 - 16,783 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040281864   ⟹   XP_040137798
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494598,790,269 - 98,799,229 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040137798 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013221933   ⟸   XM_013366479
- Sequence:
RefSeq Acc Id: XP_040137798   ⟸   XM_040281864
Protein Domains
TGF_BETA_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001837 UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000001634 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001830 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/TrEMBL
  TGF-b_C UniProtKB/TrEMBL
  TGF-beta-rel UniProtKB/TrEMBL
  TGFb_CS UniProtKB/TrEMBL
NCBI Gene Gdf3 ENTREZGENE
PANTHER PTHR11848 UniProtKB/TrEMBL
Pfam TGF_beta UniProtKB/TrEMBL
PROSITE TGF_BETA_1 UniProtKB/TrEMBL
  TGF_BETA_2 UniProtKB/TrEMBL
SMART TGFB UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/TrEMBL
UniProt I3LZA5_ICTTR UniProtKB/TrEMBL