Ppp1r14b (protein phosphatase 1 regulatory inhibitor subunit 14B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ppp1r14b (protein phosphatase 1 regulatory inhibitor subunit 14B) Ictidomys tridecemlineatus
Analyze
Symbol: Ppp1r14b
Name: protein phosphatase 1 regulatory inhibitor subunit 14B
RGD ID: 12447660
Description: ENCODES a protein that exhibits phosphatase inhibitor activity (ortholog); protein phosphatase regulator activity (ortholog); INVOLVED IN innate immune response (inferred); regulation of phosphorylation (inferred); ASSOCIATED WITH genetic disease (ortholog); high grade glioma (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,513,490 - 8,515,564 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,954,839 - 4,957,644 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,955,839 - 4,957,908 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppp1r14b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,513,490 - 8,515,564 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,954,839 - 4,957,644 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,955,839 - 4,957,908 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R14B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,244,479 - 64,246,943 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,244,479 - 64,246,943 (-)EnsemblGRCh38hg38GRCh38
GRCh371164,011,951 - 64,014,415 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,768,527 - 63,770,989 (-)NCBINCBI36Build 36hg18NCBI36
Build 341163,768,527 - 63,770,970NCBI
Celera1161,338,832 - 61,341,296 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,339,843 - 60,354,318 (-)NCBIHuRef
CHM1_11163,894,949 - 63,897,410 (-)NCBICHM1_1
T2T-CHM13v2.01164,234,501 - 64,236,964 (-)NCBIT2T-CHM13v2.0
Ppp1r14b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,952,416 - 6,954,692 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,952,336 - 6,954,692 (+)EnsemblGRCm39 Ensembl
GRCm38196,975,048 - 6,977,324 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,974,968 - 6,977,324 (+)EnsemblGRCm38mm10GRCm38
MGSCv37197,049,538 - 7,051,814 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36197,042,092 - 7,044,368 (+)NCBIMGSCv36mm8
Celera196,753,442 - 6,754,241 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.12NCBI
Ppp1r14b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,594,416 - 213,596,527 (+)NCBIGRCr8
mRatBN7.21204,165,210 - 204,167,320 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,163,299 - 204,167,319 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,515,438 - 212,517,549 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,610,472 - 219,612,582 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,301,526 - 212,303,637 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,229,835 - 222,231,945 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,229,835 - 222,231,944 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,220,688 - 229,222,798 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,648,657 - 209,650,767 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11209,807,086 - 209,809,196 (+)NCBI
Celera1201,698,936 - 201,700,943 (+)NCBICelera
Cytogenetic Map1q43NCBI
Ppp1r14b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,831,513 - 20,834,040 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,832,224 - 20,834,317 (+)NCBIChiLan1.0ChiLan1.0
PPP1R14B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,471,709 - 65,474,106 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11166,516,847 - 66,519,245 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,601,594 - 59,604,050 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11162,946,458 - 62,948,540 (-)NCBIpanpan1.1PanPan1.1panPan2
PPP1R14B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,813,829 - 52,816,365 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,814,174 - 52,816,365 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,420,839 - 51,423,198 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,859,171 - 53,861,523 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,859,339 - 53,861,523 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,962,021 - 52,964,373 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,537,571 - 52,539,930 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,321,490 - 53,323,842 (+)NCBIUU_Cfam_GSD_1.0
PPP1R14B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,862,661 - 7,867,876 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,865,445 - 7,867,878 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,932,322 - 6,934,760 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R14B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,989,540 - 9,991,940 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,989,030 - 9,992,088 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038107,327,912 - 107,330,277 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r14b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476722,060,364 - 22,062,662 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476722,060,363 - 22,062,662 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000026858   ⟹   ENSSTOP00000017260
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365994,954,839 - 4,957,644 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000037134   ⟹   ENSSTOP00000031267
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365994,955,282 - 4,957,644 (+)Ensembl
RefSeq Acc Id: XM_005333574   ⟹   XP_005333631
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049478,513,490 - 8,515,564 (+)NCBI
SpeTri2.0NW_0049365994,955,839 - 4,957,908 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333631 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017260.2
  ENSSTOP00000031267.1
GenBank Protein KAG3284783 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005333631   ⟸   XM_005333574
- Sequence:
RefSeq Acc Id: ENSSTOP00000017260   ⟸   ENSSTOT00000026858
RefSeq Acc Id: ENSSTOP00000031267   ⟸   ENSSTOT00000037134


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021959 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026858.2 UniProtKB/TrEMBL
  ENSSTOT00000037134.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.220 UniProtKB/TrEMBL
InterPro CPI-17 UniProtKB/TrEMBL
  CPI-17_sf UniProtKB/TrEMBL
NCBI Gene Ppp1r14b ENTREZGENE
PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 14B UniProtKB/TrEMBL
  PTHR16188 UniProtKB/TrEMBL
Pfam PP1_inhibitor UniProtKB/TrEMBL
Superfamily-SCOP SSF81790 UniProtKB/TrEMBL
UniProt A0A287DCH0_ICTTR UniProtKB/TrEMBL
  I3MYR4_ICTTR UniProtKB/TrEMBL