Golga2 (golgin A2) - Rat Genome Database

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Gene: Golga2 (golgin A2) Ictidomys tridecemlineatus
Analyze
Symbol: Golga2
Name: golgin A2
RGD ID: 12447083
Description: ENCODES a protein that exhibits identical protein binding (ortholog); importin-alpha family protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN asymmetric cell division (ortholog); axonogenesis (ortholog); centrosome cycle (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); primary coenzyme Q10 deficiency 7 (ortholog); FOUND IN cis-Golgi network (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: golgin A2, transcript variant X1; golgin A2, transcript variant X2; golgin A2, transcript variant X3; golgin A2, transcript variant X4; golgin A2, transcript variant X5; golgin A2, transcript variant X6; golgin subfamily A member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,030,098 - 196,045,856 (-)NCBI
SpeTri2.0NW_00493648715,798,623 - 15,814,360 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Golga2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,030,098 - 196,045,856 (-)NCBI
SpeTri2.0NW_00493648715,798,623 - 15,814,360 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLGA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,255,829 - 128,276,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9128,255,829 - 128,276,026 (-)EnsemblGRCh38hg38GRCh38
GRCh379131,018,108 - 131,038,286 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,057,929 - 130,078,089 (-)NCBINCBI36hg18NCBI36
Build 349128,097,662 - 128,117,822NCBI
Celera9101,669,012 - 101,689,172 (-)NCBI
Cytogenetic Map9q34.11NCBI
HuRef9100,631,562 - 100,651,722 (-)NCBIHuRef
CHM1_19131,169,131 - 131,189,291 (-)NCBICHM1_1
T2T-CHM13v2.09140,462,943 - 140,483,121 (-)NCBI
Golga2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,178,299 - 32,197,925 (+)NCBIGRCm39mm39
GRCm39 Ensembl232,177,396 - 32,197,933 (+)Ensembl
GRCm38232,288,287 - 32,307,913 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,287,384 - 32,307,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,143,773 - 32,163,441 (+)NCBIGRCm37mm9NCBIm37
MGSCv36232,109,393 - 32,129,930 (+)NCBImm8
Celera231,992,729 - 32,012,412 (+)NCBICelera
Cytogenetic Map2BNCBI
Golga2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2315,583,862 - 15,604,279 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl315,584,039 - 15,604,279 (+)Ensembl
Rnor_6.0311,317,328 - 11,337,569 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,317,183 - 11,336,458 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,666,198 - 16,686,439 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,412,088 - 11,434,260 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1311,308,459 - 11,330,632 (+)NCBI
Celera310,328,596 - 10,348,889 (+)NCBICelera
Cytogenetic Map3p12NCBI
Golga2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955570782,218 - 799,044 (-)NCBIChiLan1.0ChiLan1.0
GOLGA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19128,045,805 - 128,065,200 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,047,056 - 128,065,137 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0999,376,847 - 99,397,128 (-)NCBIMhudiblu_PPA_v0panPan3
GOLGA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,234,836 - 55,251,698 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,429,688 - 54,446,610 (+)NCBI
ROS_Cfam_1.0956,156,848 - 56,173,782 (+)NCBI
ROS_Cfam_1.0 Ensembl956,156,862 - 56,173,777 (+)Ensembl
UMICH_Zoey_3.1954,916,750 - 54,933,678 (+)NCBI
UNSW_CanFamBas_1.0955,231,389 - 55,248,316 (+)NCBI
UU_Cfam_GSD_1.0955,322,893 - 55,339,826 (+)NCBI
GOLGA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11268,702,823 - 268,721,174 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,693,900 - 302,710,489 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GOLGA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,852,442 - 9,873,536 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl129,852,461 - 9,873,767 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660796,359,761 - 6,380,755 (-)NCBIVero_WHO_p1.0
Golga2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247606,588,351 - 6,605,518 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013356742   ⟹   XP_013212196
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947196,030,098 - 196,045,856 (-)NCBI
SpeTri2.0NW_00493648715,798,623 - 15,814,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013356743   ⟹   XP_013212197
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947196,030,989 - 196,045,856 (-)NCBI
SpeTri2.0NW_00493648715,798,623 - 15,814,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013356744   ⟹   XP_013212198
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947196,030,989 - 196,045,856 (-)NCBI
SpeTri2.0NW_00493648715,798,623 - 15,814,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013356745   ⟹   XP_013212199
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947196,030,989 - 196,045,856 (-)NCBI
SpeTri2.0NW_00493648715,798,623 - 15,814,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040286388   ⟹   XP_040142322
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947196,030,989 - 196,045,856 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013212198   ⟸   XM_013356744
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013212199   ⟸   XM_013356745
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013212197   ⟸   XM_013356743
- Peptide Label: isoform X2
- UniProtKB: I3MJ76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212196   ⟸   XM_013356742
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040142322   ⟸   XM_040286388
- Peptide Label: isoform X5
Protein Domains
GOLGA2L5


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012444 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000011174 ENTREZGENE
  ENSSTOP00000011174.3 UniProtKB/TrEMBL
  ENSSTOP00000026315.1 UniProtKB/TrEMBL
  ENSSTOP00000028367 ENTREZGENE
  ENSSTOP00000028367.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012468.3 UniProtKB/TrEMBL
  ENSSTOT00000035445.1 UniProtKB/TrEMBL
  ENSSTOT00000043133.1 UniProtKB/TrEMBL
InterPro GM130_C UniProtKB/TrEMBL
  GOLGA_cons_dom UniProtKB/TrEMBL
  Golgin_A UniProtKB/TrEMBL
NCBI Gene Golga2 ENTREZGENE
PANTHER PTHR10881 UniProtKB/TrEMBL
Pfam GM130_C UniProtKB/TrEMBL
  GOLGA2L5 UniProtKB/TrEMBL
UniProt A0A287CYA3_ICTTR UniProtKB/TrEMBL
  A0A287D4B9_ICTTR UniProtKB/TrEMBL
  I3MJ76 ENTREZGENE, UniProtKB/TrEMBL