Pgf (placental growth factor) - Rat Genome Database

Name: Pgf
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Pgf (placental growth factor) Ictidomys tridecemlineatus

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Symbol:

Pgf

Name:

placental growth factor

RGD ID:

12447048

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); branching involved in ureteric bud morphogenesis (ortholog); cellular response to hormone stimulus (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); ankylosing spondylitis (ortholog); asthma (ortholog); FOUND IN extracellular space (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

placenta growth factor; placental growth factor, transcript variant X1; placental growth factor, transcript variant X2; placental growth factor, transcript variant X3; placental growth factor, transcript variant X4

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PGF (placental growth factor)	NCBI	Ortholog
Mus musculus (house mouse):	Pgf (placental growth factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pgf (placental growth factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pgf (placental growth factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PGF (placental growth factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PGF (placental growth factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PGF (placental growth factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PGF (placental growth factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pgf (placental growth factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	27,957,791 - 27,970,740 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	4,098,225 - 4,111,142 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	4,098,187 - 4,111,108 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis (ISO)

ankylosing spondylitis (ISO)

asthma (ISO)

atherosclerosis (ISO)

bacterial pneumonia (ISO)

brain ischemia (ISO)

breast cancer (ISO)

carotid artery disease (ISO)

colitis (ISO)

congestive heart failure (ISO)

Crohn's disease (ISO)

Diabetic Nephropathies (ISO)

diabetic neuropathy (ISO)

diabetic retinopathy (ISO)

dilated cardiomyopathy (ISO)

end stage renal disease (ISO)

Endotoxemia (ISO)

epilepsy (ISO)

Experimental Arthritis (ISO)

Experimental Diabetes Mellitus (ISO)

Experimental Liver Cirrhosis (ISO)

glioblastoma (ISO)

hypertension (ISO)

Hypoxia (ISO)

Inflammation (ISO)

intellectual disability (ISO)

limited scleroderma (ISO)

liver cirrhosis (ISO)

lymphedema (ISO)

myocardial infarction (ISO)

Myocardial Ischemia (ISO)

obesity (ISO)

pancreatic ductal adenocarcinoma (ISO)

pancreatic endocrine carcinoma (ISO)

Penetrating Wounds (ISO)

pre-eclampsia (ISO)

Premature Birth (ISO)

pulmonary emphysema (ISO)

pulmonary hypertension (ISO)

pyelonephritis (ISO)

renal cell carcinoma (ISO)

rheumatoid arthritis (ISO)

Sepsis (ISO)

sickle cell anemia (ISO)

Spontaneous Abortions (ISO)

status epilepticus (ISO)

Stroke (ISO)

systemic lupus erythematosus (ISO)

temporal lobe epilepsy (ISO)

Tibial Fractures (ISO)

Wallerian Degeneration (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

animal organ regeneration (ISO)

branching involved in ureteric bud morphogenesis (ISO)

cellular response to hormone stimulus (ISO)

female pregnancy (ISO)

gene expression (ISO)

glycogen metabolic process (ISO)

induction of positive chemotaxis (IEA)

placenta development (ISO)

positive chemotaxis (IEA)

positive regulation of angiogenesis (IEA,ISO)

positive regulation of cell division (IEA)

positive regulation of cell population proliferation (IEA)

positive regulation of endothelial cell proliferation (IEA,ISO)

positive regulation of mast cell chemotaxis (IEA)

positive regulation of protein phosphorylation (IEA)

regulation of blood pressure (ISO)

regulation of morphogenesis of a branching structure (ISO)

response to hypoxia (IEA,ISO)

response to xenobiotic stimulus (ISO)

sprouting angiogenesis (IEA,ISO)

vascular endothelial growth factor receptor signaling pathway (IEA)

vascular endothelial growth factor signaling pathway (IEA)

Cellular Component

extracellular region (IEA)

extracellular space (IEA,ISO)

membrane (IEA)

Molecular Function

chemoattractant activity (IEA)

growth factor activity (IEA)

identical protein binding (ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

vascular endothelial growth factor receptor binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

vascular endothelial growth factor signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Pgf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	27,957,791 - 27,970,740 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	4,098,225 - 4,111,142 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	4,098,187 - 4,111,108 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PGF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	74,941,830 - 74,955,764 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	74,941,834 - 74,955,626 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	75,408,533 - 75,422,467 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	74,478,290 - 74,492,044 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	74,478,292 - 74,492,044	NCBI
Celera	14	55,446,919 - 55,460,674 (-)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	55,576,546 - 55,590,481 (-)	NCBI		HuRef
CHM1_1	14	75,347,700 - 75,361,635 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	69,150,944 - 69,164,879 (-)	NCBI		T2T-CHM13v2.0

Pgf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	85,213,413 - 85,224,087 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	85,213,409 - 85,224,564 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	85,166,637 - 85,177,785 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	85,166,635 - 85,177,790 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	86,507,591 - 86,518,235 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	86,055,744 - 86,066,388 (-)	NCBI		MGSCv36	mm8
Celera	12	86,623,655 - 86,634,299 (-)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	39.58	NCBI

Pgf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	110,547,165 - 110,557,747 (-)	NCBI		GRCr8
mRatBN7.2	6	104,816,102 - 104,826,685 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	104,816,104 - 104,826,685 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	104,985,728 - 104,996,309 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	105,284,901 - 105,295,482 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	104,654,265 - 104,664,846 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	108,994,016 - 109,004,598 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	108,994,018 - 109,004,598 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	116,552,660 - 116,563,242 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	109,215,540 - 109,226,122 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	109,218,997 - 109,229,578 (-)	NCBI
Celera	6	102,639,061 - 102,649,643 (-)	NCBI		Celera
RH 3.4 Map	6	731.99	RGD
Cytogenetic Map	6	q31	NCBI

Pgf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955523	616,154 - 627,713 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955523	616,196 - 627,055 (+)	NCBI	ChiLan1.0	ChiLan1.0

PGF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	76,024,811 - 76,038,594 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	75,241,311 - 75,255,228 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	55,494,152 - 55,508,066 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	74,338,976 - 74,352,964 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	74,338,976 - 74,352,964 (-)	Ensembl	panpan1.1		panPan2

PGF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	48,059,554 - 48,110,534 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	48,059,552 - 48,075,170 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	47,743,752 - 47,795,118 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	48,287,229 - 48,338,603 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	8	47,958,057 - 48,009,418 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	47,979,365 - 48,030,910 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	48,377,990 - 48,429,367 (-)	NCBI		UU_Cfam_GSD_1.0

PGF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	98,148,994 - 98,162,741 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	98,149,510 - 98,162,784 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	103,993,598 - 104,006,849 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PGF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	52,160,904 - 52,174,493 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	52,161,787 - 52,173,989 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	40,391,564 - 40,405,145 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pgf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	26,751,530 - 26,764,242 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	26,751,986 - 26,764,154 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005321332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021723785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000024309 ⟹ ENSSTOP00000020633

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936488	4,098,225 - 4,111,142 (-)	Ensembl

Ensembl Acc Id:

ENSSTOT00000041274 ⟹ ENSSTOP00000030055

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936488	4,098,225 - 4,111,142 (-)	Ensembl

RefSeq Acc Id:

XM_005321332 ⟹ XP_005321389

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	27,957,791 - 27,970,740 (+)	NCBI
SpeTri2.0	NW_004936488	4,098,187 - 4,111,108 (-)	NCBI

Sequence:

show sequence

TGAGCAGGAAACTGCATCCTCAGACTTCTTCTGCCCAGCCACGAGACGACTTGTGGTCGCATCG
TGTCCCCGAGGACCCTCCCAAGGACTTGCCTGCCCCACGCCGCCCCGACCCGCCGGGAGGCTCC
TCACCAGGTACCCAGCCACAACCTTACCTGCTGGCTCCTGACTCCCTGAGCTTCCAAAGGATGC
TCGGGCCATCAGCGGGGACCTCCGGGCAGCAGTGAGGGGGACATTCAGCCCCTCACTCAACTCT
TCTCCTGTGCCAGGAAATCCCCCAGGGGGACTAGCATGGTGATTTTCCCTTGGAGCCCCCTGGC
TCAGGACTTCTGAGAAGATGCTAGCCCTGAGGCTGCTCACTTGCTTCCTGCAGCTCCTGGCTGG
GCTGGCGCTGCCTGCTGTGCCCCCCCAGCAGCGGGCCCTGTCTGCTGAGACCAGCTCATCAGAG
GTGGAAGTGATACCCTTCCATGAGGTGTGGGGCCGCAGCTACTGCCGGGCCCTGGAGAAGCTGG
TGGACATTGTGACCGAGTACCCTAGTGAGATGGAGTACATACTGAGCCCGTCCTGTGTCTCCCT
GAAGCGCTGCACTGGCTGCTGTGGGGACGAGGACCTGCACTGTCTGCCCGTGGAGACAACCAAC
GTCACCATGCAGATCCTGAAGATCCCCCCCGAGGGTCCACCTTCCTATGTGGAGCTGCAATTCT
CTCAGCACGTGAGCTGCGAGTGCAGACCTCTGCGGGAAAAGATGAAGCCAGAAAGGAGGAGACT
CAAGGGCAGGGGGAAGAGGAAGAAAGAGAAGCAGAGATCCACAGACTGCCATCAGTGCAGTGAC
ACTGTTCCTCGGACGTAACCACCCCTCGGAGGAGCGAGACCCCGCCCCCAGCTCGTGTATTTAT
TACTGTCACACTCCTGGTGACCTCCCTGCTGGTACCTGTCCTCTATTTATTAGCCAACTGCATC
CCTGTTGAATGACTCCCTCCCTCCAGGACAAGAGGAACGGAGGGAAAGGACCCTCAGGAATTCA
GTGCCTTAAACAGAACGTGAGAGAAAGAAGGAAGCCAGACACGGACCTGTGGGAGCTTCGGCTT
GGGAAGAAGCGAGACATGTGGCCTTGCAAGGGGCAGGCCAGGCCCCAGAGGGGACCCAGAATCT
GTTCCTGGGCCCAGCGCTCTGCACAGGGAGCCCAGCTCCTGGCCGAGGGCAGGGGTACAGGCGC
GTGCTCCGGCCACCAGGGCCCAGGCTGGGTGGGAAGGAGGAGGGTGGGTGGAGGGGATCCAGAC
GGGTCCTCCTCTTCCTGACAGCGGCTCTTCACCCTGGAGACCAGGATGTTCAGTGCTGGAGAAC
GGCGCTTGCCTGGGGGCTTTTGCCACTCCTGCCCTCCCACTTTGCCACCTGCTTATTTTGGGAA
CATTGTTCTTTCTAGCCAGGGCACCACCACTCTGCCCCCCCGTCTCAGGGACTTAGGCTGAGTG
GGCCCCAGGCTAGACAGCAAGCAGGCTGGACCAGGAGGAGCCCAGCAAAATGGGGATGAGGTCA
CCGGGAGAGAGGCCCTTGTGTCTTAGCCCAGTGGCTGCGGAAAGTGGAGCAGATTCCCCGAGGG
CCCTGTGCCCCACCAGCTGCCCCGCAGGGCTGTCTGACTGCCAAGCCAGATTCTCTTGAATAAA
GCATTCTAGTCTGGAAGCAGCCTGTCCAGGGTCGTGTGTGCTGGGAGCAGTGGGCAG

hide sequence

RefSeq Acc Id:

XM_021723783 ⟹ XP_021579458

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	27,957,791 - 27,970,740 (+)	NCBI
SpeTri2.0	NW_004936488	4,098,187 - 4,111,108 (-)	NCBI

Sequence:

show sequence

TGAGCAGGAAACTGCATCCTCAGACTTCTTCTGCCCAGCCACGAGACGACTTGTGGTCGCATCG
TGTCCCCGAGGACCCTCCCAAGGACTTGCCTGCCCCACGCCGCCCCGACCCGCCGGGAGGCTCC
TCACCAGGAAATCCCCCAGGGGGACTAGCATGGTGATTTTCCCTTGGAGCCCCCTGGCTCAGGA
CTTCTGAGAAGATGCTAGCCCTGAGGCTGCTCACTTGCTTCCTGCAGCTCCTGGCTGGGCTGGC
GCTGCCTGCTGTGCCCCCCCAGCAGCGGGCCCTGTCTGCTGAGACCAGCTCATCAGAGGTGGAA
GTGATACCCTTCCATGAGGTGTGGGGCCGCAGCTACTGCCGGGCCCTGGAGAAGCTGGTGGACA
TTGTGACCGAGTACCCTAGTGAGATGGAGTACATACTGAGCCCGTCCTGTGTCTCCCTGAAGCG
CTGCACTGGCTGCTGTGGGGACGAGGACCTGCACTGTCTGCCCGTGGAGACAACCAACGTCACC
ATGCAGATCCTGAAGATCCCCCCCGAGGGTCCACCTTCCTATGTGGAGCTGCAATTCTCTCAGC
ACGTGAGCTGCGAGTGCAGACCTCTGCGGGAAAAGATGAAGCCAGAAAGGAGGAGACTCAAGGG
CAGGGGGAAGAGGAAGAAAGAGAAGCAGAGATCCACAGACTGCCATCAGTGCAGTGACACTGTT
CCTCGGACGTAACCACCCCTCGGAGGAGCGAGACCCCGCCCCCAGCTCGTGTATTTATTACTGT
CACACTCCTGGTGACCTCCCTGCTGGTACCTGTCCTCTATTTATTAGCCAACTGCATCCCTGTT
GAATGACTCCCTCCCTCCAGGACAAGAGGAACGGAGGGAAAGGACCCTCAGGAATTCAGTGCCT
TAAACAGAACGTGAGAGAAAGAAGGAAGCCAGACACGGACCTGTGGGAGCTTCGGCTTGGGAAG
AAGCGAGACATGTGGCCTTGCAAGGGGCAGGCCAGGCCCCAGAGGGGACCCAGAATCTGTTCCT
GGGCCCAGCGCTCTGCACAGGGAGCCCAGCTCCTGGCCGAGGGCAGGGGTACAGGCGCGTGCTC
CGGCCACCAGGGCCCAGGCTGGGTGGGAAGGAGGAGGGTGGGTGGAGGGGATCCAGACGGGTCC
TCCTCTTCCTGACAGCGGCTCTTCACCCTGGAGACCAGGATGTTCAGTGCTGGAGAACGGCGCT
TGCCTGGGGGCTTTTGCCACTCCTGCCCTCCCACTTTGCCACCTGCTTATTTTGGGAACATTGT
TCTTTCTAGCCAGGGCACCACCACTCTGCCCCCCCGTCTCAGGGACTTAGGCTGAGTGGGCCCC
AGGCTAGACAGCAAGCAGGCTGGACCAGGAGGAGCCCAGCAAAATGGGGATGAGGTCACCGGGA
GAGAGGCCCTTGTGTCTTAGCCCAGTGGCTGCGGAAAGTGGAGCAGATTCCCCGAGGGCCCTGT
GCCCCACCAGCTGCCCCGCAGGGCTGTCTGACTGCCAAGCCAGATTCTCTTGAATAAAGCATTC
TAGTCTGGAAGCAGCCTGTCCAGGGTCGTGTGTGCTGGGAGCAGTGGGCAG

hide sequence

RefSeq Acc Id:

XM_021723784 ⟹ XP_021579459

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	27,957,791 - 27,970,740 (+)	NCBI
SpeTri2.0	NW_004936488	4,098,187 - 4,111,108 (-)	NCBI

Sequence:

show sequence

TGAGCAGGAAACTGCATCCTCAGACTTCTTCTGCCCAGCCACGAGACGACTTGTGGTCGCATCG
TGTCCCCGAGGACCCTCCCAAGGACTTGCCTGCCCCACGCCGCCCCGACCCGCCGGGAGGCTCC
TCACCAGGTACCCAGCCACAACCTTACCTGCTGGCTCCTGACTCCCTGAGCTTCCAAAGGATGC
TCGGGCCATCAGCGGGGACCTCCGGGCAGCAGTGAGGGGGACATTCAGCCCCTCACTCAACTCT
TCTCCTGTGCCAGGAAATCCCCCAGGGGGACTAGCATGGTGATTTTCCCTTGGAGCCCCCTGGC
TCAGGACTTCTGAGAAGATGCTAGCCCTGAGGCTGCTCACTTGCTTCCTGCAGCTCCTGGCTGG
GCTGGCGCTGCCTGCTGTGCCCCCCCAGCAGCGGGCCCTGTCTGCTGAGACCAGCTCATCAGAG
GTGGAAGTGATACCCTTCCATGAGGTGTGGGGCCGCAGCTACTGCCGGGCCCTGGAGAAGCTGG
TGGACATTGTGACCGAGTACCCTAGTGAGATGGAGTACATACTGAGCCCGTCCTGTGTCTCCCT
GAAGCGCTGCACTGGCTGCTGTGGGGACGAGGACCTGCACTGTCTGCCCGTGGAGACAACCAAC
GTCACCATGCAGATCCTGAAGATCCCCCCCGAGGGTCCACCTTCCTATGTGGAGCTGCAATTCT
CTCAGCACGTGAGCTGCGAGTGCAGACCTCTGCGGGAAAAGATGAAGCCAGAAAGGAGGAGACT
CAAGGGCAGGGGGAAGAGGAAGAAAGAGAAGCAGAGATCCACAGACTGCCATCAGTGAGTGCAG
TGACACTGTTCCTCGGACGTAACCACCCCTCGGAGGAGCGAGACCCCGCCCCCAGCTCGTGTAT
TTATTACTGTCACACTCCTGGTGACCTCCCTGCTGGTACCTGTCCTCTATTTATTAGCCAACTG
CATCCCTGTTGAATGACTCCCTCCCTCCAGGACAAGAGGAACGGAGGGAAAGGACCCTCAGGAA
TTCAGTGCCTTAAACAGAACGTGAGAGAAAGAAGGAAGCCAGACACGGACCTGTGGGAGCTTCG
GCTTGGGAAGAAGCGAGACATGTGGCCTTGCAAGGGGCAGGCCAGGCCCCAGAGGGGACCCAGA
ATCTGTTCCTGGGCCCAGCGCTCTGCACAGGGAGCCCAGCTCCTGGCCGAGGGCAGGGGTACAG
GCGCGTGCTCCGGCCACCAGGGCCCAGGCTGGGTGGGAAGGAGGAGGGTGGGTGGAGGGGATCC
AGACGGGTCCTCCTCTTCCTGACAGCGGCTCTTCACCCTGGAGACCAGGATGTTCAGTGCTGGA
GAACGGCGCTTGCCTGGGGGCTTTTGCCACTCCTGCCCTCCCACTTTGCCACCTGCTTATTTTG
GGAACATTGTTCTTTCTAGCCAGGGCACCACCACTCTGCCCCCCCGTCTCAGGGACTTAGGCTG
AGTGGGCCCCAGGCTAGACAGCAAGCAGGCTGGACCAGGAGGAGCCCAGCAAAATGGGGATGAG
GTCACCGGGAGAGAGGCCCTTGTGTCTTAGCCCAGTGGCTGCGGAAAGTGGAGCAGATTCCCCG
AGGGCCCTGTGCCCCACCAGCTGCCCCGCAGGGCTGTCTGACTGCCAAGCCAGATTCTCTTGAA
TAAAGCATTCTAGTCTGGAAGCAGCCTGTCCAGGGTCGTGTGTGCTGGGAGCAGTGGGCAG

hide sequence

RefSeq Acc Id:

XM_021723785 ⟹ XP_021579460

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	27,957,791 - 27,970,740 (+)	NCBI
SpeTri2.0	NW_004936488	4,098,187 - 4,111,108 (-)	NCBI

Sequence:

show sequence

TGAGCAGGAAACTGCATCCTCAGACTTCTTCTGCCCAGCCACGAGACGACTTGTGGTCGCATCG
TGTCCCCGAGGACCCTCCCAAGGACTTGCCTGCCCCACGCCGCCCCGACCCGCCGGGAGGCTCC
TCACCAGGTACCCAGCCACAACCTTACCTGCTGGCTCCTGACTCCCTGAGCTTCCAAAGGATGC
TCGGGCCATCAGCGGGGACCTCCGGGCAGCAGTGAGGGGGACATTCAGCCCCTCACTCAACTCT
TCTCCTGTGCCAGGAAATCCCCCAGGGGGACTAGCATGGTGATTTTCCCTTGGAGCCCCCTGGC
TCAGGACTTCTGAGAAGATGCTAGCCCTGAGGCTGCTCACTTGCTTCCTGCAGCTCCTGGCTGG
GCTGGCGCTGCCTGCTGTGCCCCCCCAGCAGCGGGCCCTGTCTGCTGAGACCAGCTCATCAGAG
GTGGAAGTGATACCCTTCCATGAGGTGTGGGGCCGCAGCTACTGCCGGGCCCTGGAGAAGCTGG
TGGACATTGTGACCGAGTACCCTAGTGAGATGGAGTACATACTGAGCCCGTCCTGTGTCTCCCT
GAAGCGCTGCACTGGCTGCTGTGGGGACGAGGACCTGCACTGTCTGCCCGTGGAGACAACCAAC
GTCACCATGCAGATCCTGAAGATCCCCCCCGAGGGTCCACCTTCCTATGTGGAGCTGCAATTCT
CTCAGCACGTGAGCTGCGAGTGCAGACCTCTGCGGGAAAAGATGAAGCCAGAAAGGTGCAGTGA
CACTGTTCCTCGGACGTAACCACCCCTCGGAGGAGCGAGACCCCGCCCCCAGCTCGTGTATTTA
TTACTGTCACACTCCTGGTGACCTCCCTGCTGGTACCTGTCCTCTATTTATTAGCCAACTGCAT
CCCTGTTGAATGACTCCCTCCCTCCAGGACAAGAGGAACGGAGGGAAAGGACCCTCAGGAATTC
AGTGCCTTAAACAGAACGTGAGAGAAAGAAGGAAGCCAGACACGGACCTGTGGGAGCTTCGGCT
TGGGAAGAAGCGAGACATGTGGCCTTGCAAGGGGCAGGCCAGGCCCCAGAGGGGACCCAGAATC
TGTTCCTGGGCCCAGCGCTCTGCACAGGGAGCCCAGCTCCTGGCCGAGGGCAGGGGTACAGGCG
CGTGCTCCGGCCACCAGGGCCCAGGCTGGGTGGGAAGGAGGAGGGTGGGTGGAGGGGATCCAGA
CGGGTCCTCCTCTTCCTGACAGCGGCTCTTCACCCTGGAGACCAGGATGTTCAGTGCTGGAGAA
CGGCGCTTGCCTGGGGGCTTTTGCCACTCCTGCCCTCCCACTTTGCCACCTGCTTATTTTGGGA
ACATTGTTCTTTCTAGCCAGGGCACCACCACTCTGCCCCCCCGTCTCAGGGACTTAGGCTGAGT
GGGCCCCAGGCTAGACAGCAAGCAGGCTGGACCAGGAGGAGCCCAGCAAAATGGGGATGAGGTC
ACCGGGAGAGAGGCCCTTGTGTCTTAGCCCAGTGGCTGCGGAAAGTGGAGCAGATTCCCCGAGG
GCCCTGTGCCCCACCAGCTGCCCCGCAGGGCTGTCTGACTGCCAAGCCAGATTCTCTTGAATAA
AGCATTCTAGTCTGGAAGCAGCCTGTCCAGGGTCGTGTGTGCTGGGAGCAGTGGGCAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005321389	(Get FASTA)	NCBI Sequence Viewer
	XP_021579458	(Get FASTA)	NCBI Sequence Viewer
	XP_021579459	(Get FASTA)	NCBI Sequence Viewer
	XP_021579460	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000020633.1
	ENSSTOP00000030055.1
GenBank Protein	KAG3260681	(Get FASTA)	NCBI Sequence Viewer
	KAG3260682	(Get FASTA)	NCBI Sequence Viewer
	KAG3260683	(Get FASTA)	NCBI Sequence Viewer
	KAG3260684	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005321389 ⟸ XM_005321332
- Peptide Label:	isoform X1
- UniProtKB:	I3N8D7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLALRLLTCFLQLLAGLALPAVPPQQRALSAETSSSEVEVIPFHEVWGRSYCRALEKLVDIVTE YPSEMEYILSPSCVSLKRCTGCCGDEDLHCLPVETTNVTMQILKIPPEGPPSYVELQFSQHVSC ECRPLREKMKPERRRLKGRGKRKKEKQRSTDCHQCSDTVPRT hide sequence

RefSeq Acc Id:	XP_021579458 ⟸ XM_021723783
- Peptide Label:	isoform X1
- UniProtKB:	I3N8D7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLALRLLTCFLQLLAGLALPAVPPQQRALSAETSSSEVEVIPFHEVWGRSYCRALEKLVDIVTE YPSEMEYILSPSCVSLKRCTGCCGDEDLHCLPVETTNVTMQILKIPPEGPPSYVELQFSQHVSC ECRPLREKMKPERRRLKGRGKRKKEKQRSTDCHQCSDTVPRT hide sequence

RefSeq Acc Id:	XP_021579460 ⟸ XM_021723785
- Peptide Label:	isoform X3
- Sequence:	show sequence MLALRLLTCFLQLLAGLALPAVPPQQRALSAETSSSEVEVIPFHEVWGRSYCRALEKLVDIVTE YPSEMEYILSPSCVSLKRCTGCCGDEDLHCLPVETTNVTMQILKIPPEGPPSYVELQFSQHVSC ECRPLREKMKPERCSDTVPRT hide sequence

RefSeq Acc Id:	XP_021579459 ⟸ XM_021723784
- Peptide Label:	isoform X2
- Sequence:	show sequence MLALRLLTCFLQLLAGLALPAVPPQQRALSAETSSSEVEVIPFHEVWGRSYCRALEKLVDIVTE YPSEMEYILSPSCVSLKRCTGCCGDEDLHCLPVETTNVTMQILKIPPEGPPSYVELQFSQHVSC ECRPLREKMKPERRRLKGRGKRKKEKQRSTDCHQ hide sequence

Ensembl Acc Id:

ENSSTOP00000030055 ⟸ ENSSTOT00000041274

Ensembl Acc Id:

ENSSTOP00000020633 ⟸ ENSSTOT00000024309

Protein Domains

Platelet-derived growth factor (PDGF) family

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000023041	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024309.2	UniProtKB/TrEMBL
	ENSSTOT00000041274.1	UniProtKB/TrEMBL
Gene3D-CATH	2.10.90.10	UniProtKB/TrEMBL
InterPro	Cystine-knot_cytokine	UniProtKB/TrEMBL
	PD_growth_factor_CS	UniProtKB/TrEMBL
	PDGF/VEGF_dom	UniProtKB/TrEMBL
	PDGF/VEGF_growth_factor	UniProtKB/TrEMBL
NCBI Gene	Pgf	ENTREZGENE
PANTHER	PLACENTA GROWTH FACTOR	UniProtKB/TrEMBL
	VASCULAR ENDOTHELIAL GROWTH FACTOR	UniProtKB/TrEMBL
Pfam	PDGF	UniProtKB/TrEMBL
PROSITE	PDGF_1	UniProtKB/TrEMBL
	PDGF_2	UniProtKB/TrEMBL
SMART	PDGF	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57501	UniProtKB/TrEMBL
UniProt	I3N8D7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations