Dtx3 (deltex E3 ubiquitin ligase 3)

Gene: Dtx3 (deltex E3 ubiquitin ligase 3) Ictidomys tridecemlineatus

Analyze

Symbol:

Dtx3

Name:

deltex E3 ubiquitin ligase 3

RGD ID:

12446009

Description:

ENCODES a protein that exhibits metal ion binding (inferred); transferase activity (inferred); ubiquitin protein ligase activity (inferred); INVOLVED IN Notch signaling pathway (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); familial melanoma (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

deltex E3 ubiquitin ligase 3, transcript variant X1; deltex E3 ubiquitin ligase 3, transcript variant X2; deltex E3 ubiquitin ligase 3, transcript variant X4; deltex homolog 3; probable E3 ubiquitin-protein ligase DTX3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	57,115,836 - 57,121,204 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936646	1,751,387 - 1,754,353 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936646	1,749,061 - 1,754,399 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

familial melanoma (ISO)

genetic disease (ISO)

paraplegia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Notch signaling pathway (IEA,ISO)

protein ubiquitination (IEA)

Cellular Component

cytoplasm (IEA)

nucleoplasm (IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Dtx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	57,115,836 - 57,121,204 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936646	1,751,387 - 1,754,353 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936646	1,749,061 - 1,754,399 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DTX3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	57,604,824 - 57,609,802 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	57,604,622 - 57,609,804 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	57,998,607 - 58,003,585 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	56,284,871 - 56,289,850 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	56,284,870 - 56,289,850	NCBI
Celera	12	57,654,419 - 57,659,398 (+)	NCBI		Celera
Cytogenetic Map	12	q13.3	NCBI
HuRef	12	55,036,290 - 55,041,268 (+)	NCBI		HuRef
CHM1_1	12	57,966,420 - 57,971,399 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	57,572,308 - 57,578,021 (+)	NCBI		T2T-CHM13v2.0

Dtx3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	127,026,242 - 127,032,367 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	127,026,247 - 127,031,597 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	127,190,373 - 127,196,498 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	127,190,378 - 127,195,728 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	126,627,434 - 126,632,765 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	126,593,327 - 126,598,658 (-)	NCBI		MGSCv36	mm8
Celera	10	129,583,408 - 129,588,773 (-)	NCBI		Celera
Cytogenetic Map	10	D3	NCBI
cM Map	10	74.5	NCBI

Dtx3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	64,898,693 - 64,904,636 (-)	NCBI		GRCr8
mRatBN7.2	7	63,013,769 - 63,018,431 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	63,013,371 - 63,018,522 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	64,903,070 - 64,907,731 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	67,105,474 - 67,110,135 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	66,906,542 - 66,911,203 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	70,476,737 - 70,482,852 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	70,476,729 - 70,481,796 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	70,654,378 - 70,660,222 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	67,145,276 - 67,149,937 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	60,155,333 - 60,160,117 (-)	NCBI		Celera
Cytogenetic Map	7	q22	NCBI

Dtx3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	5,328,725 - 5,334,092 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	5,328,723 - 5,334,092 (+)	NCBI	ChiLan1.0	ChiLan1.0

DTX3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	36,731,185 - 36,734,797 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	36,727,956 - 36,731,568 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	31,316,968 - 31,322,340 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	31,576,351 - 31,581,819 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	31,577,001 - 31,579,669 (-)	Ensembl	panpan1.1		panPan2

DTX3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	1,684,394 - 1,687,244 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	1,683,410 - 1,686,814 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	1,745,460 - 1,750,402 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	1,691,642 - 1,696,581 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	1,691,625 - 1,696,579 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	1,669,425 - 1,674,360 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	1,911,185 - 1,916,104 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	2,036,415 - 2,041,352 (+)	NCBI		UU_Cfam_GSD_1.0

DTX3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	22,867,711 - 22,873,393 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	22,867,691 - 22,873,413 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	24,734,097 - 24,820,351 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DTX3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	53,512,657 - 53,517,978 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	53,515,043 - 53,517,330 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	192,444,161 - 192,449,230 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dtx3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624802	10,354,077 - 10,359,769 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624802	10,353,488 - 10,359,690 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005335686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013363099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021733530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002485115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000024559 ⟹ ENSSTOP00000019912

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936646	1,751,387 - 1,754,353 (+)	Ensembl

RefSeq Acc Id:

XM_005335686 ⟹ XP_005335743

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	57,115,836 - 57,121,202 (-)	NCBI
SpeTri2.0	NW_004936646	1,749,063 - 1,754,399 (+)	NCBI

Sequence:

show sequence

TCCAGGAGGGGCAAGCGAGAAGGGTGGCGTCTCTAAGGGATTTAACCTCCTACCCTTGGTTCCG
TGACACCACCCCCTCCCTCCAAAGACTGGGACTGAGCCTCCATTTTTGTTTTGGGGCGGAAGGG
CAGGGGCTCCCGGGTAGAAGGGGTCAAAGGAAACGGTTATTATCACCTGGGAAGGGAAAGGGGG
TGCTGTCTTCCCTCCCTCCCTTTCCTTCAGTCTGCACCCCCTGCGCCCACTTCTACCTTCTCGG
GGTCTCCCCCCCCCCGCCCTTGTTGCTAAGGCCCGGACCGTCATCCCAGCAACAGCCTCAGTCA
TGTGACCGGCAATGGCGGCGCTGACGAGAGCCCTGGTCAGCTGAGTGTAGAAACAGGGATTTTT
GCTGCCATCATCTTCCATGGGCTTTCCAGGTCACACAACCTACAAGTAGGGAGCAGGGGAAGAG
AGAGTGAGCCTGCATGCCAATTTTAAGCTCTTCAGGATCAAATGTCGTTCGTCCTGTCCAGAAT
GGCAGCCTGTGGAGGCACCTGCAAGAACAAAGTGACTGTCTCCAAGCCTGTGTGGGACTTCCTG
AGCAAAGAGACCCCAGCCCGGCTGGCCCGGCTTCGGGAGGAGCACCGAGTGTCCATCCTCATAG
ATGGCGAGACTTCTGACATCTATGTTCTCCAGCTTTCCCCACAGGGTCCTCCCCCAGCCCCTCC
CAATGGGCTCTACCTGGCCCGGAAGGCCCTTAAAGGGCTGCTGAAAGAGGCAGAGAAAGAGCTG
AAGAAAGCTCAGAGGCAGGGGGAGCTTATGGGCTGCCTGGCTTTGGGGGGTGGTGGGGAACACC
CTGAGCTGCACCGCCCAGGCCCACCCCCTCTTCGAGCAGCCCCACTCCTGCCCCCAGGGGCACG
GGGGCTCCCCCCTCCTCCCCCTCCCCTGCCTCCTCCTCTTCCTCCCCGTCTTCGGGAGGAGGCA
GAAGAGCAGGAGAGCACCTGCCCCATCTGTCTCGGGGAGATTCAGAACGCCAAGACGTTGGAGA
AGTGCCGGCACTCATTCTGCGAGGGCTGCATCACCCGGGCACTGCAGGTGAAAAAGGCCTGCCC
CATGTGTGGCCGCTTCTATGGGCAGCTGGTGGGCAACCAGCCTCAGAATGGGAGGATGCTGGTT
TCCAAGGACGCCACCCTCCTACTGCCCAGCTATGAGAAGTATGGCACCATTGTCATCCAGTACG
TCTTCCCGCCCGGTGTCCAGGGGGCTGAACACCCAAACCCAGGAGTTCGGTATCCTGGCACCAC
ACGGGTGGCCTACCTCCCGGATTGCCCGGAGGGCAACAAGGTGCTGACCCTGTTCCGCAAGGCG
TTTGACCAGCGTCTCACCTTCACTATTGGCACGTCCATGACCACAGGGAGACCAAATGTCATCA
CCTGGAACGACATCCACCACAAGACCAGCTGCACAGGGGGACCCCAGCTGTTTGGGTACCCGGA
CCCCACCTACTTGACCCGGGTTCAAGAGGAACTGAGAGCCAAGGGTATCACAGATGACTGAAGG
ACAGCCCCCATGCCAAGGCCCCGCCATCCTCCTCTTCTAGGACCCAGCGGAAGCCTCTGTTCTC
CTCCCTCCCCCTGCCCCCACACCACACTAGTAGGGGACCTGTCTGACCGGGGAGGGAGTTCAGA
GGGGAAAGGGGCAATCCCCTCCCCATCCCCCAATGGCCAAGTGCTTCAGTGCCCTGTGAGCCAC
TCCCTTCTGTCAGAGGCTGGTCTCCAAGGCTCTGCTCTCTGCTCCCCGTGTACATACTCCTAGT
TCCCCTGCCCCTCCATTGCTCTTGGCTTCTGGTATGTGCTGTGCTCCAGTGACCAAGCTGAGAA
AGGACCTGGGTGGGTCACTTGAACCCCCGCTCCCACATACTGCTCCACTTTGGGCTAATGTGAG
TCCCCCACCCCCATGGAGCCAGCTGTGTGTTCATAAGATACAGTTCTCCTACTTTAACTTTGTC
CTTTCTCTCCTGTGTCTCTGTCTGTCAGTCTGTCTTTCTCTCGCTCTTCTCTGCCCCCTATAAG
GAGCCTCCTTACCCTGTTCTGGAATCGCCGCCAGACTGTAGCTTTTAATTTAATAAAAATAAAG
TAAAATATGCAACTCTC

hide sequence

RefSeq Acc Id:

XM_013363099 ⟹ XP_013218553

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	57,115,836 - 57,121,203 (-)	NCBI
SpeTri2.0	NW_004936646	1,749,061 - 1,754,399 (+)	NCBI

Sequence:

show sequence

CCTCCAGGAGGGGCAAGCGAGAAGGGTGGCGTCTCTAAGGGATTTAACCTCCTACCCTTGGTTC
CGTGACACCACCCCCTCCCTCCAAAGACTGGGACTGAGCCTCCATTTTTGTTTTGGGGCGGAAG
GGCAGGGGCTCCCGGGTAGAAGGGGTCAAAGGAAACGGTTATTATCACCTGGGAAGGGAAAGGG
GGTGCTGTCTTCCCTCCCTCCCTTTCCTTCAGTCTGCACCCCCTGCGCCCACTTCTACCTTCTC
GGGGTCTCCCCCCCCCCGCCCTTGTTGCTAAGGCCCGGACCGTCATCCCAGCAACAGCCTCAGT
CATGTGACCGGCAATGGCGGCGCTGACGAGAGCCCTGGTCAGCTGAGTGTAGAAACAGGGATTT
TTGCTGCCATCATCTTCCATGGGCTTTCCAGGTCACACAACCTACAAGTAGGGAGCAGGGGAAG
AGAGAGTGAGCCTGCATGCCAATTTTAAGCTCTTCAGGATCAAAAATGGCAGCCTGTGGAGGCA
CCTGCAAGAACAAAGTGACTGTCTCCAAGCCTGTGTGGGACTTCCTGAGCAAAGAGACCCCAGC
CCGGCTGGCCCGGCTTCGGGAGGAGCACCGAGTGTCCATCCTCATAGATGGCGAGACTTCTGAC
ATCTATGTTCTCCAGCTTTCCCCACAGGGTCCTCCCCCAGCCCCTCCCAATGGGCTCTACCTGG
CCCGGAAGGCCCTTAAAGGGCTGCTGAAAGAGGCAGAGAAAGAGCTGAAGAAAGCTCAGAGGCA
GGGGGAGCTTATGGGCTGCCTGGCTTTGGGGGGTGGTGGGGAACACCCTGAGCTGCACCGCCCA
GGCCCACCCCCTCTTCGAGCAGCCCCACTCCTGCCCCCAGGGGCACGGGGGCTCCCCCCTCCTC
CCCCTCCCCTGCCTCCTCCTCTTCCTCCCCGTCTTCGGGAGGAGGCAGAAGAGCAGGAGAGCAC
CTGCCCCATCTGTCTCGGGGAGATTCAGAACGCCAAGACGTTGGAGAAGTGCCGGCACTCATTC
TGCGAGGGCTGCATCACCCGGGCACTGCAGGTGAAAAAGGCCTGCCCCATGTGTGGCCGCTTCT
ATGGGCAGCTGGTGGGCAACCAGCCTCAGAATGGGAGGATGCTGGTTTCCAAGGACGCCACCCT
CCTACTGCCCAGCTATGAGAAGTATGGCACCATTGTCATCCAGTACGTCTTCCCGCCCGGTGTC
CAGGGGGCTGAACACCCAAACCCAGGAGTTCGGTATCCTGGCACCACACGGGTGGCCTACCTCC
CGGATTGCCCGGAGGGCAACAAGGTGCTGACCCTGTTCCGCAAGGCGTTTGACCAGCGTCTCAC
CTTCACTATTGGCACGTCCATGACCACAGGGAGACCAAATGTCATCACCTGGAACGACATCCAC
CACAAGACCAGCTGCACAGGGGGACCCCAGCTGTTTGGGTACCCGGACCCCACCTACTTGACCC
GGGTTCAAGAGGAACTGAGAGCCAAGGGTATCACAGATGACTGAAGGACAGCCCCCATGCCAAG
GCCCCGCCATCCTCCTCTTCTAGGACCCAGCGGAAGCCTCTGTTCTCCTCCCTCCCCCTGCCCC
CACACCACACTAGTAGGGGACCTGTCTGACCGGGGAGGGAGTTCAGAGGGGAAAGGGGCAATCC
CCTCCCCATCCCCCAATGGCCAAGTGCTTCAGTGCCCTGTGAGCCACTCCCTTCTGTCAGAGGC
TGGTCTCCAAGGCTCTGCTCTCTGCTCCCCGTGTACATACTCCTAGTTCCCCTGCCCCTCCATT
GCTCTTGGCTTCTGGTATGTGCTGTGCTCCAGTGACCAAGCTGAGAAAGGACCTGGGTGGGTCA
CTTGAACCCCCGCTCCCACATACTGCTCCACTTTGGGCTAATGTGAGTCCCCCACCCCCATGGA
GCCAGCTGTGTGTTCATAAGATACAGTTCTCCTACTTTAACTTTGTCCTTTCTCTCCTGTGTCT
CTGTCTGTCAGTCTGTCTTTCTCTCGCTCTTCTCTGCCCCCTATAAGGAGCCTCCTTACCCTGT
TCTGGAATCGCCGCCAGACTGTAGCTTTTAATTTAATAAAAATAAAGTAAAATATGCAACTCTC

hide sequence

RefSeq Acc Id:

XM_021733530 ⟹ XP_021589205

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	57,115,836 - 57,121,204 (-)	NCBI
SpeTri2.0	NW_004936646	1,749,061 - 1,754,399 (+)	NCBI

Sequence:

show sequence

CCTCCAGGAGGGGCAAGCGAGAAGGGTGGCGTCTCTAAGGGATTTAACCTCCTACCCTTGGTTC
CGTGACACCACCCCCTCCCTCCAAAGACTGGGACTGAGCCTCCATTTTTGTTTTGGGGCGGAAG
GGCAGGGGCTCCCGGGTAGAAGGGGTCAAAGGAAACGGTTATTATCACCTGGGAAGGGAAAGGG
GGTGCTGTCTTCCCTCCCTCCCTTTCCTTCAGTCTGCACCCCCTGCGCCCACTTCTACCTTCTC
GGGGTCTCCCCCCCCCCGCCCTTGTTGCTAAGGCCCGGACCGTCATCCCAGCAACAGCCTCAGT
CATGTGACCGGCAATGGCGGCGCTGACGAGAGGTCACACAACCTACAAGTAGGGAGCAGGGGAA
GAGAGAGTGAGCCTGCATGCCAATTTTAAGCTCTTCAGGATCAAAAATGGCAGCCTGTGGAGGC
ACCTGCAAGAACAAAGTGACTGTCTCCAAGCCTGTGTGGGACTTCCTGAGCAAAGAGACCCCAG
CCCGGCTGGCCCGGCTTCGGGAGGAGCACCGAGTGTCCATCCTCATAGATGGCGAGACTTCTGA
CATCTATGTTCTCCAGCTTTCCCCACAGGGTCCTCCCCCAGCCCCTCCCAATGGGCTCTACCTG
GCCCGGAAGGCCCTTAAAGGGCTGCTGAAAGAGGCAGAGAAAGAGCTGAAGAAAGCTCAGAGGC
AGGGGGAGCTTATGGGCTGCCTGGCTTTGGGGGGTGGTGGGGAACACCCTGAGCTGCACCGCCC
AGGCCCACCCCCTCTTCGAGCAGCCCCACTCCTGCCCCCAGGGGCACGGGGGCTCCCCCCTCCT
CCCCCTCCCCTGCCTCCTCCTCTTCCTCCCCGTCTTCGGGAGGAGGCAGAAGAGCAGGAGAGCA
CCTGCCCCATCTGTCTCGGGGAGATTCAGAACGCCAAGACGTTGGAGAAGTGCCGGCACTCATT
CTGCGAGGGCTGCATCACCCGGGCACTGCAGGTGAAAAAGGCCTGCCCCATGTGTGGCCGCTTC
TATGGGCAGCTGGTGGGCAACCAGCCTCAGAATGGGAGGATGCTGGTTTCCAAGGACGCCACCC
TCCTACTGCCCAGCTATGAGAAGTATGGCACCATTGTCATCCAGTACGTCTTCCCGCCCGGTGT
CCAGGGGGCTGAACACCCAAACCCAGGAGTTCGGTATCCTGGCACCACACGGGTGGCCTACCTC
CCGGATTGCCCGGAGGGCAACAAGGTGCTGACCCTGTTCCGCAAGGCGTTTGACCAGCGTCTCA
CCTTCACTATTGGCACGTCCATGACCACAGGGAGACCAAATGTCATCACCTGGAACGACATCCA
CCACAAGACCAGCTGCACAGGGGGACCCCAGCTGTTTGGGTACCCGGACCCCACCTACTTGACC
CGGGTTCAAGAGGAACTGAGAGCCAAGGGTATCACAGATGACTGAAGGACAGCCCCCATGCCAA
GGCCCCGCCATCCTCCTCTTCTAGGACCCAGCGGAAGCCTCTGTTCTCCTCCCTCCCCCTGCCC
CCACACCACACTAGTAGGGGACCTGTCTGACCGGGGAGGGAGTTCAGAGGGGAAAGGGGCAATC
CCCTCCCCATCCCCCAATGGCCAAGTGCTTCAGTGCCCTGTGAGCCACTCCCTTCTGTCAGAGG
CTGGTCTCCAAGGCTCTGCTCTCTGCTCCCCGTGTACATACTCCTAGTTCCCCTGCCCCTCCAT
TGCTCTTGGCTTCTGGTATGTGCTGTGCTCCAGTGACCAAGCTGAGAAAGGACCTGGGTGGGTC
ACTTGAACCCCCGCTCCCACATACTGCTCCACTTTGGGCTAATGTGAGTCCCCCACCCCCATGG
AGCCAGCTGTGTGTTCATAAGATACAGTTCTCCTACTTTAACTTTGTCCTTTCTCTCCTGTGTC
TCTGTCTGTCAGTCTGTCTTTCTCTCGCTCTTCTCTGCCCCCTATAAGGAGCCTCCTTACCCTG
TTCTGGAATCGCCGCCAGACTGTAGCTTTTAATTTAATAAAAATAAAGTAAAATATGCAACTCT
C

hide sequence

RefSeq Acc Id:

XM_040280424 ⟹ XP_040136358

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	57,115,836 - 57,121,202 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005335743	(Get FASTA)	NCBI Sequence Viewer
	XP_013218553	(Get FASTA)	NCBI Sequence Viewer
	XP_021589205	(Get FASTA)	NCBI Sequence Viewer
	XP_040136358	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000019912.2
GenBank Protein	KAG3291515	(Get FASTA)	NCBI Sequence Viewer
	KAG3291516	(Get FASTA)	NCBI Sequence Viewer
	KAG3291517	(Get FASTA)	NCBI Sequence Viewer
	KAG3291518	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005335743 ⟸ XM_005335686
- Peptide Label:	isoform X2
- UniProtKB:	I3N6B6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVLQLSP QGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPELHRPGPPPLRAA PLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKCRHSFCEGCITRA LQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVIQYVFPPGVQGAEHPNP GVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTTGRPNVITWNDIHHKTSCTGG PQLFGYPDPTYLTRVQEELRAKGITDD hide sequence

RefSeq Acc Id:	XP_013218553 ⟸ XM_013363099
- Peptide Label:	isoform X1
- UniProtKB:	I3N6B6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPILSSSGSKMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVLQ LSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPELHRPGPPPL RAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKCRHSFCEGCI TRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVIQYVFPPGVQGAEH PNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTTGRPNVITWNDIHHKTSC TGGPQLFGYPDPTYLTRVQEELRAKGITDD hide sequence

RefSeq Acc Id:	XP_021589205 ⟸ XM_021733530
- Peptide Label:	isoform X1
- UniProtKB:	I3N6B6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPILSSSGSKMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVLQ LSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPELHRPGPPPL RAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKCRHSFCEGCI TRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVIQYVFPPGVQGAEH PNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTTGRPNVITWNDIHHKTSC TGGPQLFGYPDPTYLTRVQEELRAKGITDD hide sequence

RefSeq Acc Id:	XP_040136358 ⟸ XM_040280424
- Peptide Label:	isoform X2
- UniProtKB:	I3N6B6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000019912 ⟸ ENSSTOT00000024559

Protein Domains

RING-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000026285	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024559.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.390.130	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
InterPro	Deltex_C	UniProtKB/TrEMBL
	Deltex_C_sf	UniProtKB/TrEMBL
	Deltex_fam	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
NCBI Gene	Dtx3	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE DTX3-RELATED	UniProtKB/TrEMBL
	PTHR12622	UniProtKB/TrEMBL
Pfam	DTC	UniProtKB/TrEMBL
	zf-C3HC4_2	UniProtKB/TrEMBL
PROSITE	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
SMART	RING	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
UniProt	I3N6B6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD