Cenpj (centromere protein J) - Rat Genome Database

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Gene: Cenpj (centromere protein J) Ictidomys tridecemlineatus
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Symbol: Cenpj
Name: centromere protein J
RGD ID: 12445665
Description: ENCODES a protein that exhibits gamma-tubulin binding (inferred); identical protein binding (inferred); protein domain specific binding (inferred); INVOLVED IN astral microtubule nucleation (ortholog); centriole assembly (ortholog); centriole replication (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); lissencephaly (ortholog); FOUND IN centriole (inferred); centrosome (inferred); ciliary basal body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: centromere protein J, transcript variant X1; centromere protein J, transcript variant X2; centromere protein J, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,601,634 - 120,654,006 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367202,149,302 - 2,204,139 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367202,149,296 - 2,201,599 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cenpj
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945120,601,634 - 120,654,006 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367202,149,302 - 2,204,139 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367202,149,296 - 2,201,599 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381324,882,279 - 24,934,000 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1324,882,279 - 24,922,889 (-)EnsemblGRCh38hg38GRCh38
GRCh371325,456,417 - 25,496,999 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361324,354,412 - 24,395,085 (-)NCBINCBI36Build 36hg18NCBI36
Build 341324,355,171 - 24,395,018NCBI
Celera136,519,974 - 6,560,638 (-)NCBICelera
Cytogenetic Map13q12.12-q12.13NCBI
HuRef136,269,821 - 6,310,405 (-)NCBIHuRef
CHM1_11325,425,035 - 25,465,641 (-)NCBICHM1_1
T2T-CHM13v2.01324,090,519 - 24,142,252 (-)NCBIT2T-CHM13v2.0
Cpap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391456,764,218 - 56,812,950 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1456,764,218 - 56,812,882 (-)EnsemblGRCm39 Ensembl
GRCm381456,526,761 - 56,575,489 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,526,761 - 56,575,425 (-)EnsemblGRCm38mm10GRCm38
MGSCv371457,145,598 - 57,190,683 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361455,480,871 - 55,525,942 (-)NCBIMGSCv36mm8
Celera1454,324,537 - 54,369,663 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.28NCBI
Cpap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81534,742,838 - 34,806,020 (-)NCBIGRCr8
mRatBN7.21530,627,206 - 30,690,384 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1530,627,224 - 30,686,791 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1532,618,561 - 32,678,144 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01533,769,217 - 33,828,800 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01532,027,309 - 32,086,891 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01536,745,672 - 36,809,228 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1536,746,088 - 36,798,814 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01540,599,733 - 40,658,983 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41535,487,198 - 35,550,034 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11535,503,314 - 35,558,495 (-)NCBI
Celera1530,339,104 - 30,398,973 (-)NCBICelera
Cytogenetic Map15p12NCBI
Cpap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955497430,461 - 477,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955497432,595 - 497,335 (-)NCBIChiLan1.0ChiLan1.0
CPAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21424,480,417 - 24,525,024 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11315,589,327 - 15,634,675 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,175,936 - 6,215,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11324,464,045 - 24,503,432 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1324,464,045 - 24,503,432 (-)Ensemblpanpan1.1panPan2
CENPJ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12518,555,182 - 18,611,133 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2518,557,084 - 18,610,983 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2518,583,170 - 18,636,532 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02518,692,566 - 18,748,546 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2518,694,838 - 18,748,405 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12518,557,406 - 18,610,759 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02518,569,509 - 18,622,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02518,626,287 - 18,679,651 (+)NCBIUU_Cfam_GSD_1.0
CENPJ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11289,653 - 355,581 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111289,660 - 357,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21187,284,454 - 87,296,300 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CENPJ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.134,319,136 - 4,360,214 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl34,319,103 - 4,360,158 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605740,088,235 - 40,130,982 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477618,182,349 - 18,244,944 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477618,163,924 - 18,245,303 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000011316   ⟹   ENSSTOP00000010153
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367202,149,302 - 2,204,139 (+)Ensembl
RefSeq Acc Id: XM_040281353   ⟹   XP_040137287
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945120,601,634 - 120,654,006 (+)NCBI
RefSeq Acc Id: XM_040281354   ⟹   XP_040137288
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945120,601,634 - 120,654,006 (+)NCBI
RefSeq Acc Id: XM_040281356   ⟹   XP_040137290
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945120,601,636 - 120,654,006 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040137287 (Get FASTA)   NCBI Sequence Viewer  
  XP_040137288 (Get FASTA)   NCBI Sequence Viewer  
  XP_040137290 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010153.3
GenBank Protein KAG3292851 (Get FASTA)   NCBI Sequence Viewer  
  KAG3292852 (Get FASTA)   NCBI Sequence Viewer  
  KAG3292853 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040137287   ⟸   XM_040281353
- Peptide Label: isoform X1
- UniProtKB: I3MH32 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040137288   ⟸   XM_040281354
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040137290   ⟸   XM_040281356
- Peptide Label: isoform X3
Ensembl Acc Id: ENSSTOP00000010153   ⟸   ENSSTOT00000011316

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011291 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011316.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.450.20 UniProtKB/TrEMBL
InterPro Tcp10_C_dom UniProtKB/TrEMBL
  Tcp10_C_sf UniProtKB/TrEMBL
  TCP10_fam UniProtKB/TrEMBL
NCBI Gene Cenpj ENTREZGENE
PANTHER PTHR10331 UniProtKB/TrEMBL
  PTHR10331:SF23 UniProtKB/TrEMBL
Pfam Tcp10_C UniProtKB/TrEMBL
UniProt I3MH32 ENTREZGENE, UniProtKB/TrEMBL