Troap (trophinin associated protein) - Rat Genome Database

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Gene: Troap (trophinin associated protein) Ictidomys tridecemlineatus
Analyze
Symbol: Troap
Name: trophinin associated protein
RGD ID: 12444727
Description: ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC101974090; tastin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,078,412 - 66,086,191 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365127,079,485 - 7,086,382 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Troap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,078,412 - 66,086,191 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365127,079,485 - 7,086,382 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TROAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381249,323,255 - 49,331,731 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1249,323,236 - 49,331,731 (+)EnsemblGRCh38hg38GRCh38
GRCh371249,717,038 - 49,725,514 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,003,238 - 48,011,781 (+)NCBINCBI36Build 36hg18NCBI36
Build 341248,003,328 - 48,011,781NCBI
Celera1248,510,276 - 48,518,819 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1246,747,401 - 46,755,945 (+)NCBIHuRef
CHM1_11249,682,668 - 49,691,211 (+)NCBICHM1_1
T2T-CHM13v2.01249,284,317 - 49,293,921 (+)NCBIT2T-CHM13v2.0
Troap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,972,854 - 98,981,290 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1598,972,456 - 98,981,290 (+)EnsemblGRCm39 Ensembl
GRCm381599,074,973 - 99,083,409 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,074,575 - 99,083,409 (+)EnsemblGRCm38mm10GRCm38
MGSCv371598,905,404 - 98,913,840 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361598,902,680 - 98,911,442 (+)NCBIMGSCv36mm8
Celera15101,229,127 - 101,237,671 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1555.8NCBI
Troap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,111,892 - 132,121,296 (+)NCBIGRCr8
mRatBN7.27130,233,534 - 130,242,369 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7130,234,544 - 130,242,365 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7132,044,775 - 132,052,569 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07134,270,349 - 134,278,143 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07134,182,856 - 134,190,650 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07140,758,576 - 140,766,423 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,758,615 - 140,766,423 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X115,263,516 - 115,271,364 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,852,698 - 137,860,157 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17137,934,261 - 137,936,594 (+)NCBI
Celera7126,719,296 - 126,727,104 (+)NCBICelera
Cytogenetic Map7q36NCBI
Troap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555008,129,874 - 8,137,263 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555008,129,031 - 8,137,235 (+)NCBIChiLan1.0ChiLan1.0
TROAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21044,853,584 - 44,863,193 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11244,850,242 - 44,859,954 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01239,420,106 - 39,428,676 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11240,305,833 - 40,314,800 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1240,305,833 - 40,314,800 (-)Ensemblpanpan1.1panPan2
TROAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,282,495 - 5,289,106 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,282,497 - 5,289,124 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2740,967,645 - 40,974,255 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,333,852 - 5,340,458 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1275,299,238 - 5,305,848 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,288,737 - 5,295,343 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02741,360,748 - 41,367,359 (+)NCBIUU_Cfam_GSD_1.0
TROAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,300,687 - 15,307,679 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,300,688 - 15,307,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2515,707,114 - 15,714,116 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TROAP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11145,552,369 - 45,560,134 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1145,553,251 - 45,560,123 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037200,568,328 - 200,576,931 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Troap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248162,853,715 - 2,861,346 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248162,853,799 - 2,861,374 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040280701   ⟹   XP_040136635
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494566,078,412 - 66,086,190 (-)NCBI
RefSeq Acc Id: XM_040280702   ⟹   XP_040136636
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494566,078,412 - 66,086,190 (-)NCBI
RefSeq Acc Id: XM_040280703   ⟹   XP_040136637
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494566,078,412 - 66,086,191 (-)NCBI
RefSeq Acc Id: XM_040280704   ⟹   XP_040136638
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494566,078,412 - 66,085,306 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040136635 (Get FASTA)   NCBI Sequence Viewer  
  XP_040136636 (Get FASTA)   NCBI Sequence Viewer  
  XP_040136637 (Get FASTA)   NCBI Sequence Viewer  
  XP_040136638 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3292038 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040136637   ⟸   XM_040280703
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040136636   ⟸   XM_040280702
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040136635   ⟸   XM_040280701
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040136638   ⟸   XM_040280704
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene Troap ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 Troap  trophinin associated protein  LOC101974090  trophinin associated protein  Symbol and/or name change 5135510 APPROVED
2021-03-26 LOC101974090  trophinin associated protein  Troap  trophinin associated protein  Symbol and/or name change 5135510 APPROVED