Dcdc1 (doublecortin domain containing 1) - Rat Genome Database

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Gene: Dcdc1 (doublecortin domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Dcdc1
Name: doublecortin domain containing 1
RGD ID: 12444288
Description: ENCODES a protein that exhibits microtubule binding (inferred); INVOLVED IN intracellular signal transduction (inferred); regulation of mitotic cytokinesis (inferred); ASSOCIATED WITH aniridia (ortholog); aniridia 1 (ortholog); Denys-Drash syndrome (ortholog); FOUND IN Flemming body (ortholog); mitotic spindle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Dcdc5; doublecortin domain containing 5; doublecortin domain-containing protein 1; doublecortin domain-containing protein 5; LOC101976730; uncharacterized LOC101976730; uncharacterized protein LOC101976730
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494733,215,775 - 33,703,190 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365336,559,484 - 6,827,979 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dcdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494733,215,775 - 33,703,190 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365336,559,484 - 6,827,979 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381130,863,603 - 31,369,739 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1130,830,369 - 31,369,810 (-)EnsemblGRCh38hg38GRCh38
GRCh371130,885,150 - 31,391,286 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361131,240,747 - 31,347,897 (-)NCBINCBI36Build 36hg18NCBI36
Build 341131,240,747 - 31,347,897NCBI
Celera1131,431,602 - 31,538,744 (-)NCBICelera
Cytogenetic Map11p14.1-p13NCBI
HuRef1130,977,492 - 31,085,706 (-)NCBIHuRef
CHM1_11131,283,686 - 31,390,898 (-)NCBICHM1_1
T2T-CHM13v2.01130,997,893 - 31,505,576 (-)NCBIT2T-CHM13v2.0
Gm9342
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392105,833,679 - 106,236,532 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2105,868,563 - 106,234,411 (+)EnsemblGRCm39 Ensembl
GRCm382106,080,864 - 106,409,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2106,003,336 - 106,406,151 (+)EnsemblGRCm38mm10GRCm38
MGSCv372106,065,822 - 106,241,378 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362106,184,519 - 106,206,972 (+)NCBIMGSCv36mm8
Celera2107,444,081 - 107,617,831 (+)NCBICelera
Cytogenetic Map2E3NCBI
cM Map255.49NCBI
Dcdc1-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83112,940,793 - 113,351,417 (+)NCBIGRCr8
mRatBN7.2392,486,054 - 92,896,696 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl392,718,047 - 92,896,542 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0397,207,500 - 97,435,067 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl397,256,881 - 97,433,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03103,873,584 - 104,052,850 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4391,716,409 - 91,896,083 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera391,766,794 - 91,943,987 (+)NCBICelera
Cytogenetic Map3q33NCBI
DCDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2933,082,524 - 33,580,111 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11133,087,008 - 33,584,582 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01130,837,264 - 31,333,462 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11130,726,365 - 31,223,089 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,755,366 - 31,181,807 (-)Ensemblpanpan1.1panPan2
DCDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11836,024,054 - 36,484,119 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1836,024,107 - 36,480,774 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1835,672,839 - 36,155,172 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01836,667,003 - 37,146,388 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1836,667,620 - 37,126,604 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11836,240,867 - 36,723,748 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01835,822,607 - 36,306,181 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01836,457,705 - 36,940,478 (+)NCBIUU_Cfam_GSD_1.0
LOC100517025
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl229,365,195 - 29,792,979 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1229,365,181 - 29,796,389 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2231,872,562 - 32,293,072 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DCDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1133,812,925 - 34,311,269 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038130,980,259 - 131,486,665 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040284557   ⟹   XP_040140491
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494733,215,775 - 33,703,190 (+)NCBI
RefSeq Acc Id: XM_040284558   ⟹   XP_040140492
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494733,215,775 - 33,703,190 (+)NCBI
RefSeq Acc Id: XM_040284559   ⟹   XP_040140493
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494733,242,343 - 33,703,190 (+)NCBI
RefSeq Acc Id: XR_005733586
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494733,215,775 - 33,703,190 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040140491   ⟸   XM_040284557
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140492   ⟸   XM_040284558
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040140493   ⟸   XM_040284559
- Peptide Label: isoform X3
Protein Domains
Doublecortin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003155 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003151.3 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.230 UniProtKB/TrEMBL
InterPro DCDC1 UniProtKB/TrEMBL
  Doublecortin_dom UniProtKB/TrEMBL
  Doublecortin_dom_sf UniProtKB/TrEMBL
NCBI Gene Dcdc5 ENTREZGENE
PANTHER DOUBLECORTIN DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR46302 UniProtKB/TrEMBL
PROSITE PS50309 UniProtKB/TrEMBL
Superfamily-SCOP SSF89837 UniProtKB/TrEMBL
UniProt I3M1R9_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Dcdc1  doublecortin domain containing 1  LOC101976730  uncharacterized LOC101976730  Symbol and/or name change 5135510 APPROVED
2021-03-25 LOC101976730  uncharacterized LOC101976730  Dcdc1  doublecortin domain containing 1  Data merged from RGD:12738100 737654 PROVISIONAL
2017-07-13 LOC101976730  uncharacterized LOC101976730  Dcdc5  doublecortin domain containing 5  Symbol and/or name change 5135510 APPROVED