Spats1 (spermatogenesis associated serine rich 1) - Rat Genome Database

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Gene: Spats1 (spermatogenesis associated serine rich 1) Ictidomys tridecemlineatus
Analyze
Symbol: Spats1
Name: spermatogenesis associated serine rich 1
RGD ID: 12442773
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermatogenesis-associated serine-rich protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494648,216,705 - 48,248,809 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647615,711,722 - 15,743,284 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647615,711,630 - 15,743,541 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Spats1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494648,216,705 - 48,248,809 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647615,711,722 - 15,743,284 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647615,711,630 - 15,743,541 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38644,342,650 - 44,380,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl644,342,650 - 44,380,179 (+)EnsemblGRCh38hg38GRCh38
GRCh37644,310,387 - 44,347,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36644,418,464 - 44,452,882 (+)NCBINCBI36Build 36hg18NCBI36
Build 34644,418,463 - 44,452,881NCBI
Celera645,863,578 - 45,898,081 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef644,033,017 - 44,067,521 (+)NCBIHuRef
CHM1_1644,314,056 - 44,348,542 (+)NCBICHM1_1
T2T-CHM13v2.0644,177,430 - 44,214,924 (+)NCBIT2T-CHM13v2.0
Spats1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391745,754,156 - 45,785,864 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1745,751,504 - 45,786,341 (-)EnsemblGRCm39 Ensembl
GRCm381745,443,230 - 45,475,108 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1745,440,578 - 45,475,415 (-)EnsemblGRCm38mm10GRCm38
MGSCv371745,585,886 - 45,611,887 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361744,912,518 - 44,938,519 (-)NCBIMGSCv36mm8
Celera1748,881,249 - 48,907,505 (-)NCBICelera
Cytogenetic Map17B3NCBI
cM Map1722.44NCBI
Spats1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8923,024,129 - 23,059,734 (+)NCBIGRCr8
mRatBN7.2915,527,179 - 15,562,286 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl915,527,142 - 15,562,280 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx924,113,815 - 24,148,842 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0929,176,496 - 29,211,526 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0927,477,251 - 27,512,287 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,911,950 - 17,947,101 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,911,944 - 17,946,797 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,800,670 - 16,835,508 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4911,127,891 - 11,162,968 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1911,125,212 - 11,160,287 (+)NCBI
Celera913,270,533 - 13,305,799 (+)NCBICelera
Cytogenetic Map9q12NCBI
Spats1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,952,485 - 9,984,305 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,952,360 - 9,984,392 (+)NCBIChiLan1.0ChiLan1.0
SPATS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,846,173 - 58,884,257 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1654,716,210 - 54,754,291 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,937,856 - 43,976,087 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1645,221,421 - 45,255,509 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl645,221,708 - 45,258,557 (+)Ensemblpanpan1.1panPan2
SPATS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,749,105 - 12,773,150 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,718,842 - 12,773,886 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,777,559 - 12,801,030 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01213,235,281 - 13,259,175 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1213,235,036 - 13,261,172 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,760,837 - 12,784,708 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,848,735 - 12,872,472 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,942,610 - 12,966,508 (+)NCBIUU_Cfam_GSD_1.0
SPATS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl739,352,652 - 39,384,194 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1739,352,543 - 39,381,984 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2745,288,676 - 45,303,530 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPATS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11727,795,644 - 27,828,874 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604444,393,514 - 44,426,854 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spats1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475415,520,033 - 15,537,486 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475415,520,033 - 15,541,317 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000020155   ⟹   ENSSTOP00000018360
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647615,711,722 - 15,743,284 (-)Ensembl
RefSeq Acc Id: XM_040282735   ⟹   XP_040138669
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494648,216,705 - 48,248,578 (+)NCBI
RefSeq Acc Id: XM_040282736   ⟹   XP_040138670
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494648,216,707 - 48,248,583 (+)NCBI
RefSeq Acc Id: XM_040282737   ⟹   XP_040138671
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494648,216,709 - 48,248,578 (+)NCBI
RefSeq Acc Id: XR_005732803
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494648,216,705 - 48,248,809 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040138669 (Get FASTA)   NCBI Sequence Viewer  
  XP_040138670 (Get FASTA)   NCBI Sequence Viewer  
  XP_040138671 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018360.2
GenBank Protein KAG3289567 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040138669   ⟸   XM_040282735
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040138670   ⟸   XM_040282736
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040138671   ⟸   XM_040282737
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000018360   ⟸   ENSSTOT00000020155


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025344 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020155.2 UniProtKB/TrEMBL
InterPro SASRP1 UniProtKB/TrEMBL
NCBI Gene Spats1 ENTREZGENE
PANTHER PTHR35845 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED SERINE-RICH PROTEIN 1 UniProtKB/TrEMBL
Pfam SASRP1 UniProtKB/TrEMBL
UniProt I3N1W4_ICTTR UniProtKB/TrEMBL