Ldb1 (LIM domain binding 1) - Rat Genome Database

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Gene: Ldb1 (LIM domain binding 1) Ictidomys tridecemlineatus
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Symbol: Ldb1
Name: LIM domain binding 1
RGD ID: 12441232
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN anterior/posterior axis specification (ortholog); cellular component assembly (ortholog); cerebellar Purkinje cell differentiation (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); cell leading edge (ortholog); chromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LIM domain-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721332,111,411 - 32,125,588 (+)NCBI
SpeTri2.0NW_0049366003,714,630 - 3,728,813 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Ldb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721332,111,411 - 32,125,588 (+)NCBI
SpeTri2.0NW_0049366003,714,630 - 3,728,813 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LDB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10102,107,560 - 102,120,453 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl10102,106,489 - 102,120,368 (-)EnsemblGRCh38hg38GRCh38
GRCh3810102,102,100 - 102,120,368 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710103,866,246 - 103,880,125 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610103,857,307 - 103,864,692 (-)NCBINCBI36hg18NCBI36
Build 3410103,857,316 - 103,864,692NCBI
Celera1097,608,243 - 97,621,137 (-)NCBI
Cytogenetic Map10q24.32NCBI
HuRef1097,499,399 - 97,512,291 (-)NCBIHuRef
CHM1_110104,149,802 - 104,163,784 (-)NCBICHM1_1
Ldb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391946,019,963 - 46,036,584 (-)NCBIGRCm39mm39
GRCm39 Ensembl1946,020,009 - 46,033,653 (-)Ensembl
GRCm381946,031,525 - 46,048,145 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1946,031,570 - 46,045,214 (-)EnsemblGRCm38mm10GRCm38
MGSCv371946,107,084 - 46,119,701 (-)NCBIGRCm37mm9NCBIm37
MGSCv361946,085,905 - 46,092,932 (-)NCBImm8
Celera1946,795,488 - 46,808,103 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.75NCBI
Ldb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21244,864,168 - 244,890,007 (-)NCBI
Rnor_6.0 Ensembl1265,785,409 - 265,798,167 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01265,772,729 - 265,798,442 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01273,215,566 - 273,228,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,253,305 - 251,260,850 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11251,513,919 - 251,527,836 (-)NCBI
Celera1240,683,703 - 240,691,248 (-)NCBICelera
Cytogenetic Map1q54NCBI
Ldb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554858,229,517 - 8,241,142 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554858,229,517 - 8,242,003 (+)NCBIChiLan1.0ChiLan1.0
LDB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110102,176,744 - 102,191,745 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10102,179,757 - 102,184,047 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01098,707,470 - 98,722,771 (-)NCBIMhudiblu_PPA_v0panPan3
LDB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12814,646,409 - 14,658,324 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2814,646,056 - 14,658,548 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2814,818,513 - 14,830,424 (-)NCBI
ROS_Cfam_1.02815,119,475 - 15,131,392 (-)NCBI
UMICH_Zoey_3.12814,664,778 - 14,676,690 (-)NCBI
UNSW_CanFamBas_1.02814,704,089 - 14,716,005 (-)NCBI
UU_Cfam_GSD_1.02814,836,486 - 14,848,625 (-)NCBI
LDB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14113,113,177 - 113,126,819 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114113,114,302 - 113,126,455 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214122,967,114 - 122,979,261 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LDB1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1995,102,312 - 95,153,029 (-)NCBI
ChlSab1.1 Ensembl995,138,424 - 95,153,179 (-)Ensembl
Ldb1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248311,573,058 - 1,584,861 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005333638   ⟹   XP_005333695
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721332,111,411 - 32,125,588 (+)NCBI
SpeTri2.0NW_0049366003,714,632 - 3,728,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013362103   ⟹   XP_013217557
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721332,111,411 - 32,125,588 (+)NCBI
SpeTri2.0NW_0049366003,714,630 - 3,728,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021731864   ⟹   XP_021587539
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721332,116,792 - 32,125,588 (+)NCBI
SpeTri2.0NW_0049366003,720,537 - 3,728,813 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040272178   ⟹   XP_040128112
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721332,111,747 - 32,125,533 (+)NCBI
RefSeq Acc Id: XM_040272179   ⟹   XP_040128113
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721332,117,368 - 32,125,533 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005333695   ⟸   XM_005333638
- Peptide Label: isoform X1
- UniProtKB: A0A287DAP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013217557   ⟸   XM_013362103
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021587539   ⟸   XM_021731864
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040128112   ⟸   XM_040272178
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040128113   ⟸   XM_040272179
- Peptide Label: isoform X4
Protein Domains
LID


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002139 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000001909 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000030613 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000031226 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002143 UniProtKB/TrEMBL
  ENSSTOT00000032573 UniProtKB/TrEMBL
  ENSSTOT00000033553 UniProtKB/TrEMBL
InterPro LDB1 UniProtKB/TrEMBL
  LID UniProtKB/TrEMBL
  LIM-bd/SEUSS UniProtKB/TrEMBL
NCBI Gene Ldb1 ENTREZGENE
PANTHER PTHR10378 UniProtKB/TrEMBL
  PTHR10378:SF7 UniProtKB/TrEMBL
Pfam LID UniProtKB/TrEMBL
  LIM_bind UniProtKB/TrEMBL
UniProt A0A287DAP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DCK5_ICTTR UniProtKB/TrEMBL
  I3LZV0_ICTTR UniProtKB/TrEMBL