LOC101969910 (E3 ubiquitin-protein ligase TRAF7-like) - Rat Genome Database

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Gene: LOC101969910 (E3 ubiquitin-protein ligase TRAF7-like) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101969910
Name: E3 ubiquitin-protein ligase TRAF7-like
RGD ID: 12440576
Description: ENCODES an pseudo that exhibits metal ion binding (inferred); FOUND IN intracellular organelle (inferred)
Type: pseudo
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase TRAF7 pseudogene
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560252,878,719 - 52,880,748 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366773,020,245 - 3,022,256 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_257980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_257980
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366773,020,247 - 3,022,256 (-)NCBI
Protein Sequences
Ensembl Protein ENSSTOP00000025972.1
Reference Protein Sequences
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000032434 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000043312.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  Znf-RING_LisH UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene LOC101969910 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRAF7 UniProtKB/TrEMBL
  WD40 REPEAT PROTEIN UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
UniProt A0A287CXE4_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101969910  E3 ubiquitin-protein ligase TRAF7-like  LOC101969910  E3 ubiquitin-protein ligase TRAF7 pseudogene  Symbol and/or name change 5135510 APPROVED