Twsg1 (twisted gastrulation BMP signaling modulator 1) - Rat Genome Database

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Gene: Twsg1 (twisted gastrulation BMP signaling modulator 1) Ictidomys tridecemlineatus
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Symbol: Twsg1
Name: twisted gastrulation BMP signaling modulator 1
RGD ID: 12440439
Description: ENCODES a protein that exhibits transforming growth factor beta binding (ortholog); INVOLVED IN BMP signaling pathway (ortholog); camera-type eye development (ortholog); cell differentiation (ortholog); ASSOCIATED WITH holoprosencephaly (ortholog); Jaw Abnormalities (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: twisted gastrulation homolog 1; twisted gastrulation protein homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049442,673,370 - 2,720,055 (-)NCBI
SpeTri2.0NW_0049366261,901,686 - 1,946,554 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Twsg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049442,673,370 - 2,720,055 (-)NCBI
SpeTri2.0NW_0049366261,901,686 - 1,946,554 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TWSG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl189,334,767 - 9,402,420 (+)EnsemblGRCh38hg38GRCh38
GRCh38189,334,773 - 9,402,420 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37189,334,771 - 9,402,418 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36189,324,851 - 9,392,418 (+)NCBINCBI36hg18NCBI36
Build 34189,324,850 - 9,392,417NCBI
Celera189,219,304 - 9,286,615 (+)NCBI
Cytogenetic Map18p11.22NCBI
HuRef189,298,467 - 9,364,729 (+)NCBIHuRef
CHM1_1189,334,596 - 9,402,161 (+)NCBICHM1_1
Twsg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,230,060 - 66,258,198 (-)NCBIGRCm39mm39
GRCm39 Ensembl1766,228,967 - 66,258,221 (-)Ensembl
GRCm381765,923,065 - 65,951,187 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1765,921,972 - 65,951,226 (-)EnsemblGRCm38mm10GRCm38
MGSCv371766,272,405 - 66,300,527 (-)NCBIGRCm37mm9NCBIm37
MGSCv361765,822,609 - 65,850,673 (-)NCBImm8
Celera1770,231,747 - 70,259,874 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1735.26NCBI
Twsg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.29105,533,116 - 105,567,525 (-)NCBI
Rnor_6.0 Ensembl9113,699,170 - 113,732,622 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.09113,699,151 - 113,732,601 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.09113,230,657 - 113,264,099 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49104,694,731 - 104,729,090 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.19104,907,180 - 104,938,570 (-)NCBI
Celera9102,911,360 - 102,940,263 (-)NCBICelera
Cytogenetic Map9q37NCBI
Twsg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554022,652,020 - 2,686,117 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554022,652,020 - 2,685,350 (-)NCBIChiLan1.0ChiLan1.0
TWSG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1187,164,091 - 7,229,271 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl187,164,091 - 7,229,271 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0184,883,688 - 4,950,963 (-)NCBIMhudiblu_PPA_v0panPan3
TWSG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1775,337,347 - 75,397,485 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl775,335,235 - 75,398,325 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha774,725,544 - 74,790,454 (+)NCBI
ROS_Cfam_1.0775,385,087 - 75,451,743 (+)NCBI
UNSW_CanFamBas_1.0775,106,123 - 75,167,742 (+)NCBI
UU_Cfam_GSD_1.0775,411,428 - 75,477,211 (+)NCBI
TWSG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl698,623,439 - 98,678,258 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1698,629,116 - 98,678,322 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2691,965,863 - 92,015,046 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TWSG1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11868,225,350 - 68,289,458 (+)NCBI
ChlSab1.1 Ensembl1868,225,343 - 68,290,969 (+)Ensembl
Twsg1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477018,047,790 - 18,081,559 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005334869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005334869   ⟹   XP_005334926
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049442,673,370 - 2,720,055 (-)NCBI
SpeTri2.0NW_0049366261,901,686 - 1,946,554 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005334926 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005334926   ⟸   XM_005334869
- UniProtKB: I3MRL8 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016477 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000014747 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016477 UniProtKB/TrEMBL
InterPro Tsg UniProtKB/TrEMBL
NCBI Gene Twsg1 ENTREZGENE
PANTHER PTHR12312 UniProtKB/TrEMBL
Pfam Tsg UniProtKB/TrEMBL
UniProt I3MRL8 ENTREZGENE, UniProtKB/TrEMBL