Dop1b (DOP1 leucine zipper like protein B) - Rat Genome Database

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Gene: Dop1b (DOP1 leucine zipper like protein B) Ictidomys tridecemlineatus
Analyze
Symbol: Dop1b
Name: DOP1 leucine zipper like protein B
RGD ID: 12439557
Description: INVOLVED IN cognition (inferred); embryonic pattern specification (inferred); Golgi to endosome transport (inferred); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); genetic disease (ortholog); FOUND IN cytosol (inferred); early endosome membrane (inferred); endosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dopey family member 2; dopey family member 2, transcript variant X1; dopey family member 2, transcript variant X2; Dopey2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497131,012,827 - 31,116,294 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365006,351,340 - 6,451,622 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365006,351,529 - 6,451,632 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Dop1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497131,012,827 - 31,116,294 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365006,351,340 - 6,451,622 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365006,351,529 - 6,451,632 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DOP1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382136,156,824 - 36,294,274 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2136,156,782 - 36,294,274 (+)EnsemblGRCh38hg38GRCh38
GRCh372137,529,122 - 37,666,572 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362136,458,709 - 36,588,442 (+)NCBINCBI36Build 36hg18NCBI36
Build 342136,458,708 - 36,588,441NCBI
Celera2122,735,540 - 22,864,978 (+)NCBICelera
Cytogenetic Map21q22.12NCBI
HuRef2123,014,356 - 23,142,359 (+)NCBIHuRef
CHM1_12137,098,621 - 37,228,277 (+)NCBICHM1_1
T2T-CHM13v2.02134,539,677 - 34,676,829 (+)NCBIT2T-CHM13v2.0
Dop1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391693,508,795 - 93,607,476 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1693,508,792 - 93,607,478 (+)EnsemblGRCm39 Ensembl
GRCm381693,711,907 - 93,810,588 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1693,711,904 - 93,810,590 (+)EnsemblGRCm38mm10GRCm38
MGSCv371693,712,152 - 93,810,833 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361693,600,447 - 93,699,128 (+)NCBIMGSCv36mm8
Celera1694,798,377 - 94,898,800 (+)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1654.63NCBI
Dop1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81146,494,058 - 46,595,601 (+)NCBIGRCr8
mRatBN7.21133,024,376 - 33,125,931 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,024,411 - 33,125,931 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,678,414 - 41,780,592 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,349,957 - 34,451,939 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01133,499,925 - 33,601,867 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01133,929,142 - 34,027,447 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1133,925,498 - 34,027,435 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01137,520,386 - 37,617,064 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41133,933,395 - 34,035,609 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11133,988,206 - 34,091,634 (+)NCBI
Celera1135,318,841 - 35,416,033 (-)NCBICelera
Cytogenetic Map11q11NCBI
Dop1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540735,437,765 - 35,517,368 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540735,437,765 - 35,517,861 (+)NCBIChiLan1.0ChiLan1.0
DOP1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22232,277,590 - 32,415,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12127,137,537 - 27,275,953 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02122,527,124 - 22,664,287 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12135,886,846 - 36,022,790 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2135,886,846 - 36,022,790 (+)Ensemblpanpan1.1panPan2
DOP1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13131,431,150 - 31,536,424 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3131,430,887 - 31,536,379 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3130,486,683 - 30,597,816 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03130,727,364 - 30,838,644 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3130,727,276 - 30,838,631 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13130,599,632 - 30,704,889 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03130,613,675 - 30,718,913 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03131,104,455 - 31,209,762 (+)NCBIUU_Cfam_GSD_1.0
DOP1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13199,848,044 - 199,982,512 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113199,848,022 - 199,982,484 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213209,860,210 - 210,009,503 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DOP1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1280,173,127 - 80,290,958 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl280,173,073 - 80,289,043 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660548,008,958 - 8,130,228 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dop1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474527,197,068 - 27,265,087 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474527,196,417 - 27,292,290 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000004004   ⟹   ENSSTOP00000003589
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365006,351,340 - 6,451,622 (-)Ensembl
RefSeq Acc Id: XM_005323496   ⟹   XP_005323553
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497131,012,828 - 31,116,294 (+)NCBI
SpeTri2.0NW_0049365006,351,529 - 6,451,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013357804   ⟹   XP_013213258
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497131,012,828 - 31,116,294 (+)NCBI
SpeTri2.0NW_0049365006,351,529 - 6,451,632 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287020   ⟹   XP_040142954
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497131,016,265 - 31,116,294 (+)NCBI
RefSeq Acc Id: XR_001229710
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440497131,012,827 - 31,113,101 (+)NCBI
SpeTri2.0NW_0049365006,354,679 - 6,451,632 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005323553 (Get FASTA)   NCBI Sequence Viewer  
  XP_013213258 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142954 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003589.3
GenBank Protein KAG3283953 (Get FASTA)   NCBI Sequence Viewer  
  KAG3283954 (Get FASTA)   NCBI Sequence Viewer  
  KAG3283955 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013213258   ⟸   XM_013357804
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005323553   ⟸   XM_005323496
- Peptide Label: isoform X2
- UniProtKB: I3M3F0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040142954   ⟸   XM_040287020
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000003589   ⟸   ENSSTOT00000004004
Protein Domains
Dopey N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003970 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004004.3 UniProtKB/TrEMBL
InterPro DOP1 UniProtKB/TrEMBL
  Dopey_N UniProtKB/TrEMBL
NCBI Gene Dopey2 ENTREZGENE
PANTHER PROTEIN DOPEY-2 UniProtKB/TrEMBL
  PTHR14042 UniProtKB/TrEMBL
Pfam Dopey_N UniProtKB/TrEMBL
UniProt I3M3F0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-19 Dop1b  DOP1 leucine zipper like protein B  Dopey2  dopey family member 2  Symbol and/or name change 5135510 APPROVED