Slc25a44 (solute carrier family 25 member 44) - Rat Genome Database

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Gene: Slc25a44 (solute carrier family 25 member 44) Ictidomys tridecemlineatus
Analyze
Symbol: Slc25a44
Name: solute carrier family 25 member 44
RGD ID: 12439039
Description: ENCODES a protein that exhibits branched-chain amino acid transmembrane transporter activity (inferred); INVOLVED IN regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 25 member 44, transcript variant X1; solute carrier family 25 member 44, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,405,455 - 26,424,014 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,435,730 - 5,454,759 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,435,841 - 5,454,396 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
mitochondrion  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc25a44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,405,455 - 26,424,014 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,435,730 - 5,454,759 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,435,841 - 5,454,396 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,194,104 - 156,212,796 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,193,932 - 156,212,796 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,163,895 - 156,182,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,430,523 - 154,449,211 (+)NCBINCBI36Build 36hg18NCBI36
Celera1129,236,709 - 129,255,567 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,525,453 - 127,544,319 (+)NCBIHuRef
CHM1_11157,559,700 - 157,578,555 (+)NCBICHM1_1
T2T-CHM13v2.01155,332,555 - 155,351,250 (+)NCBIT2T-CHM13v2.0
Slc25a44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,317,801 - 88,334,303 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,317,805 - 88,332,446 (-)EnsemblGRCm39 Ensembl
GRCm38388,410,494 - 88,425,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,410,498 - 88,425,139 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,214,417 - 88,229,061 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,496,425 - 88,511,045 (-)NCBIMGSCv36mm8
Celera388,450,135 - 88,464,782 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.82NCBI
Slc25a44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,166,136 - 176,180,965 (-)NCBIGRCr8
mRatBN7.22173,868,317 - 173,883,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,868,320 - 173,883,020 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,012,522 - 181,027,209 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,034,883 - 179,049,570 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,634,938 - 173,649,639 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,772,013 - 187,786,829 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,774,062 - 187,786,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,174,512 - 207,189,328 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,512,111 - 180,526,810 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,464,533 - 180,476,814 (-)NCBI
Celera2167,813,048 - 167,827,747 (-)NCBICelera
Cytogenetic Map2q34NCBI
Slc25a44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,347,844 - 2,364,935 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,347,951 - 2,364,935 (+)NCBIChiLan1.0ChiLan1.0
SLC25A44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,631,670 - 93,653,209 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,363,568 - 93,385,182 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,535,399 - 131,556,750 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,366,043 - 135,387,643 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,366,049 - 135,387,643 (+)Ensemblpanpan1.1panPan2
SLC25A44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,630,868 - 41,665,894 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,630,098 - 41,665,791 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha741,118,651 - 41,155,784 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,495,306 - 41,532,574 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl741,496,715 - 41,532,560 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1741,276,605 - 41,313,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,329,782 - 41,366,873 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,613,895 - 41,651,236 (-)NCBIUU_Cfam_GSD_1.0
SLC25A44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,837,009 - 93,857,158 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,837,004 - 93,857,154 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,579,411 - 102,599,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,655,836 - 7,675,356 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,655,834 - 7,675,190 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,950,036 - 6,969,703 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248851,500,255 - 1,517,481 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248851,500,837 - 1,517,481 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000001758   ⟹   ENSSTOP00000001569
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365805,435,730 - 5,454,759 (+)Ensembl
RefSeq Acc Id: XM_005331378   ⟹   XP_005331435
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,405,458 - 26,424,014 (+)NCBI
SpeTri2.0NW_0049365805,435,845 - 5,454,396 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021730539   ⟹   XP_021586214
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,405,457 - 26,424,014 (+)NCBI
SpeTri2.0NW_0049365805,435,841 - 5,454,396 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040287702   ⟹   XP_040143636
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,405,455 - 26,424,014 (+)NCBI
RefSeq Acc Id: XR_005734870
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505826,405,455 - 26,421,694 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005331435 (Get FASTA)   NCBI Sequence Viewer  
  XP_021586214 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143636 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001569.3
GenBank Protein KAG3281778 (Get FASTA)   NCBI Sequence Viewer  
  KAG3281779 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005331435   ⟸   XM_005331378
- Peptide Label: isoform X1
- UniProtKB: I3LZ57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021586214   ⟸   XM_021730539
- Peptide Label: isoform X1
- UniProtKB: I3LZ57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040143636   ⟸   XM_040287702
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000001569   ⟸   ENSSTOT00000001758


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001764 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001758.3 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
  SLC25A44 UniProtKB/TrEMBL
NCBI Gene Slc25a44 ENTREZGENE
PANTHER PTHR46314 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 44 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt I3LZ57 ENTREZGENE, UniProtKB/TrEMBL