Gjd3 (gap junction protein delta 3) - Rat Genome Database

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Gene: Gjd3 (gap junction protein delta 3) Ictidomys tridecemlineatus
Analyze
Symbol: Gjd3
Name: gap junction protein delta 3
RGD ID: 12438865
Description: ENCODES a protein that exhibits gap junction channel activity (ortholog); INVOLVED IN AV node cell to bundle of His cell communication by electrical coupling (ortholog); cell communication involved in cardiac conduction (ortholog); negative regulation of cell communication by electrical coupling involved in cardiac conduction (ortholog); ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); FOUND IN cell surface (inferred); connexin complex (inferred); gap junction (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,646,033 - 21,648,437 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649015,427,263 - 15,428,141 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649015,426,699 - 15,429,789 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gjd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,646,033 - 21,648,437 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649015,427,263 - 15,428,141 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649015,426,699 - 15,429,789 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GJD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381740,360,652 - 40,364,737 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1740,360,652 - 40,364,737 (-)EnsemblGRCh38hg38GRCh38
GRCh371738,516,904 - 38,520,989 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361735,770,430 - 35,774,471 (-)NCBINCBI36Build 36hg18NCBI36
Build 341735,770,432 - 35,774,471NCBI
Celera1735,177,047 - 35,181,088 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1734,310,022 - 34,314,063 (-)NCBIHuRef
CHM1_11738,752,212 - 38,756,253 (-)NCBICHM1_1
T2T-CHM13v2.01741,224,164 - 41,228,249 (-)NCBIT2T-CHM13v2.0
Gjd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391198,870,773 - 98,873,846 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1198,873,006 - 98,873,842 (-)EnsemblGRCm39 Ensembl
GRCm381198,979,947 - 98,983,020 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,982,180 - 98,983,016 (-)EnsemblGRCm38mm10GRCm38
MGSCv371198,843,494 - 98,844,330 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361198,798,270 - 98,799,106 (-)NCBIMGSCv36mm8
Celera11108,648,034 - 108,648,870 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1162.89NCBI
Gjd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81084,429,923 - 84,432,011 (-)NCBIGRCr8
mRatBN7.21083,933,694 - 83,935,759 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1083,934,135 - 83,934,971 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01086,888,982 - 86,891,915 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1086,889,421 - 86,890,257 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01086,674,192 - 86,689,734 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41087,759,290 - 87,760,126 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11087,773,659 - 87,780,168 (-)NCBI
Celera1082,675,110 - 82,678,043 (-)NCBICelera
Cytogenetic Map10q31NCBI
GJD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21924,589,866 - 24,595,303 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11726,484,724 - 26,491,760 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01716,925,395 - 16,929,683 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11717,149,538 - 17,153,031 (+)NCBIpanpan1.1PanPan1.1panPan2
GJD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,246,891 - 22,248,597 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,719,296 - 21,721,036 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0923,039,649 - 23,041,390 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1921,813,709 - 21,815,445 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0922,072,456 - 22,074,183 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0922,197,291 - 22,199,030 (+)NCBIUU_Cfam_GSD_1.0
GJD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11222,040,312 - 22,044,238 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21222,348,902 - 22,352,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GJD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11665,811,111 - 65,815,128 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1665,811,981 - 65,812,862 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607736,711,465 - 36,716,211 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gjd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247952,930,925 - 2,931,767 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247952,930,425 - 2,933,411 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000019864   ⟹   ENSSTOP00000023638
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493649015,427,263 - 15,428,141 (-)Ensembl
RefSeq Acc Id: XM_040268806   ⟹   XP_040124740
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560221,646,033 - 21,648,437 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040124740 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000023638.2
GenBank Protein KAG3269031 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040124740   ⟸   XM_040268806
- UniProtKB: I3NGZ1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000023638   ⟸   ENSSTOT00000019864
Protein Domains
Connexin N-terminal   Gap junction protein cysteine-rich


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019754 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000019864.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1440.80 UniProtKB/TrEMBL
InterPro Connexin UniProtKB/TrEMBL
  Connexin_CCC UniProtKB/TrEMBL
  Connexin_CS UniProtKB/TrEMBL
  Connexin_N UniProtKB/TrEMBL
  Connexin_N_sf UniProtKB/TrEMBL
NCBI Gene Gjd3 ENTREZGENE
PANTHER GAP JUNCTION DELTA-3 PROTEIN UniProtKB/TrEMBL
  PTHR11984 UniProtKB/TrEMBL
Pfam Connexin UniProtKB/TrEMBL
PRINTS CONNEXIN UniProtKB/TrEMBL
PROSITE CONNEXINS_1 UniProtKB/TrEMBL
  CONNEXINS_2 UniProtKB/TrEMBL
SMART CNX UniProtKB/TrEMBL
  Connexin_CCC UniProtKB/TrEMBL
UniProt I3NGZ1 ENTREZGENE, UniProtKB/TrEMBL