Taf8 (TATA-box binding protein associated factor 8) - Rat Genome Database

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Gene: Taf8 (TATA-box binding protein associated factor 8) Ictidomys tridecemlineatus
Analyze
Symbol: Taf8
Name: TATA-box binding protein associated factor 8
RGD ID: 12438849
Description: ENCODES a protein that exhibits protein heterodimerization activity (inferred); INVOLVED IN DNA-templated transcription open complex formation (ortholog); inner cell mass cell proliferation (ortholog); regulation of fat cell differentiation (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); microcephaly (ortholog); FOUND IN transcription factor TFIID complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TATA-box binding protein associated factor 8, transcript variant X1; TATA-box binding protein associated factor 8, transcript variant X2; transcription initiation factor TFIID subunit 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494646,161,737 - 46,188,020 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647617,779,242 - 17,798,505 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647617,779,474 - 17,798,465 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Taf8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494646,161,737 - 46,188,020 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647617,779,242 - 17,798,505 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647617,779,474 - 17,798,465 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38642,050,524 - 42,087,462 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl642,050,513 - 42,087,461 (+)EnsemblGRCh38hg38GRCh38
GRCh37642,018,262 - 42,051,010 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36642,126,229 - 42,156,622 (+)NCBINCBI36Build 36hg18NCBI36
Build 34642,126,237 - 42,163,177NCBI
Celera643,570,718 - 43,601,096 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,736,207 - 41,766,572 (+)NCBIHuRef
CHM1_1642,020,783 - 42,051,144 (+)NCBICHM1_1
T2T-CHM13v2.0641,878,783 - 41,915,706 (+)NCBIT2T-CHM13v2.0
Taf8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391747,794,289 - 47,813,216 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1747,794,289 - 47,813,217 (-)EnsemblGRCm39 Ensembl
GRCm381747,483,364 - 47,502,321 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1747,483,364 - 47,502,292 (-)EnsemblGRCm38mm10GRCm38
MGSCv371747,624,999 - 47,639,236 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361746,951,241 - 46,965,478 (-)NCBIMGSCv36mm8
Celera1750,921,899 - 50,936,194 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.33NCBI
Taf8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,989,554 - 21,009,541 (+)NCBIGRCr8
mRatBN7.2913,491,892 - 13,511,713 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl913,491,937 - 13,511,717 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx922,071,572 - 22,086,385 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0927,135,426 - 27,150,239 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0925,434,985 - 25,449,798 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0915,513,048 - 15,532,992 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,513,063 - 15,529,800 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0914,436,067 - 14,450,890 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,949,192 - 8,964,015 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.198,946,506 - 8,959,520 (+)NCBI
Celera911,242,544 - 11,257,198 (+)NCBICelera
Cytogenetic Map9q12NCBI
Taf8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,317,437 - 8,328,804 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,317,437 - 8,328,544 (+)NCBIChiLan1.0ChiLan1.0
TAF8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2556,539,070 - 56,580,844 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1652,408,981 - 52,450,771 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0641,631,483 - 41,672,988 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1642,933,107 - 42,978,368 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl642,933,107 - 42,978,271 (+)Ensemblpanpan1.1panPan2
TAF8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11210,689,268 - 10,720,945 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1210,689,289 - 10,709,532 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1210,718,181 - 10,749,723 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01211,170,497 - 11,202,056 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1211,170,501 - 11,193,220 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11210,699,619 - 10,731,165 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01210,784,014 - 10,815,576 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01210,878,036 - 10,909,579 (+)NCBIUU_Cfam_GSD_1.0
TAF8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl737,180,828 - 37,204,690 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1737,179,270 - 37,209,588 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2742,698,114 - 42,712,530 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,065,086 - 30,105,653 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604442,062,700 - 42,105,196 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475417,135,101 - 17,147,982 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475417,136,791 - 17,147,991 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000015664   ⟹   ENSSTOP00000014021
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647617,779,242 - 17,798,505 (-)Ensembl
RefSeq Acc Id: XM_005318694   ⟹   XP_005318751
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494646,161,737 - 46,180,728 (+)NCBI
SpeTri2.0NW_00493647617,779,474 - 17,798,465 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040282650   ⟹   XP_040138584
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494646,161,738 - 46,188,020 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005318751 (Get FASTA)   NCBI Sequence Viewer  
  XP_040138584 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014021.3
GenBank Protein KAG3289453 (Get FASTA)   NCBI Sequence Viewer  
  KAG3289454 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005318751   ⟸   XM_005318694
- Peptide Label: isoform X1
- UniProtKB: I3MQ46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040138584   ⟸   XM_040282650
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000014021   ⟸   ENSSTOT00000015664
Protein Domains
Bromodomain associated


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015660 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015664.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro BTP UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  TAF8 UniProtKB/TrEMBL
  TFIID_su8_C UniProtKB/TrEMBL
NCBI Gene Taf8 ENTREZGENE
PANTHER PTHR46469 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 UniProtKB/TrEMBL
Pfam Bromo_TP UniProtKB/TrEMBL
  TAF8_C UniProtKB/TrEMBL
SMART BTP UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt I3MQ46 ENTREZGENE, UniProtKB/TrEMBL