Slamf6 (SLAM family member 6) - Rat Genome Database

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Gene: Slamf6 (SLAM family member 6) Ictidomys tridecemlineatus
Analyze
Symbol: Slamf6
Name: SLAM family member 6
RGD ID: 12438483
Description: INVOLVED IN natural killer cell differentiation (ortholog); natural killer cell proliferation (ortholog); positive regulation of interleukin-17 production (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,587,657 - 6,598,479 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936740155,268 - 165,536 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slamf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050586,587,657 - 6,598,479 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936740155,268 - 165,536 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLAMF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,485,036 - 160,523,255 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,485,030 - 160,523,262 (-)EnsemblGRCh38hg38GRCh38
GRCh371160,454,826 - 160,493,045 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,721,444 - 158,759,666 (-)NCBINCBI36Build 36hg18NCBI36
Build 341157,267,892 - 157,306,115NCBI
Celera1133,523,548 - 133,561,781 (-)NCBICelera
Cytogenetic Map1q23.2-q23.3NCBI
HuRef1131,811,030 - 131,849,265 (-)NCBIHuRef
CHM1_11161,850,201 - 161,888,416 (-)NCBICHM1_1
T2T-CHM13v2.01159,622,119 - 159,660,340 (-)NCBIT2T-CHM13v2.0
Slamf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,745,002 - 171,776,525 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,745,082 - 171,780,737 (+)EnsemblGRCm39 Ensembl
GRCm381171,917,458 - 171,948,958 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,917,515 - 171,953,170 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,847,668 - 173,873,999 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,754,212 - 173,780,543 (+)NCBIMGSCv36mm8
Celera1174,769,000 - 174,795,180 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map179.54NCBI
Slamf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81386,916,956 - 86,937,697 (+)NCBIGRCr8
mRatBN7.21384,384,561 - 84,405,300 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1384,383,742 - 84,405,300 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1386,887,900 - 86,908,642 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01388,288,179 - 88,308,918 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01385,473,001 - 85,493,730 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01390,300,160 - 90,321,781 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1390,301,006 - 90,322,457 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01394,823,716 - 94,844,891 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,883,459 - 87,904,207 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1383,996,895 - 84,017,638 (+)NCBICelera
Cytogenetic Map13q24NCBI
Slamf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546812,233,629 - 12,264,502 (-)NCBIChiLan1.0ChiLan1.0
SLAMF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2189,327,888 - 89,367,231 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1189,055,259 - 89,107,209 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01135,838,862 - 135,878,207 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11139,761,121 - 139,799,348 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1139,761,121 - 139,799,348 (-)Ensemblpanpan1.1panPan2
SLAMF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,742,228 - 21,769,521 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,742,301 - 21,764,494 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3821,816,924 - 21,844,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03821,859,417 - 21,886,676 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13821,746,431 - 21,774,320 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03822,160,475 - 22,187,731 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03822,570,244 - 22,597,519 (+)NCBIUU_Cfam_GSD_1.0
SLAMF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,980,786 - 90,003,645 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,980,592 - 90,004,222 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,870,913 - 97,893,024 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLAMF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1203,426,868 - 3,465,553 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl203,453,370 - 3,463,901 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660382,483,320 - 2,522,363 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slamf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624794754,530 - 796,732 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040287274   ⟹   XP_040143208
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050586,587,657 - 6,598,479 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040143208 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3281061 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040143208   ⟸   XM_040287274


Additional Information

Database Acc Id Source(s)
NCBI Gene Slamf6 ENTREZGENE