CFDP1 (craniofacial development protein 1) - Rat Genome Database

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Gene: CFDP1 (craniofacial development protein 1) Canis lupus familiaris
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Symbol: CFDP1
Name: craniofacial development protein 1
RGD ID: 12434876
Description: INVOLVED IN cell adhesion (ortholog); fibroblast apoptotic process (ortholog); negative regulation of fibroblast apoptotic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); macular corneal dystrophy (ortholog); paraplegia (ortholog); FOUND IN chromosome (inferred); kinetochore (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: P97; p97 homologous protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1575,313,165 - 75,442,686 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl575,313,192 - 75,442,686 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha575,290,315 - 75,419,490 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0575,626,973 - 75,799,481 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl575,626,973 - 75,805,114 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1575,562,799 - 75,691,748 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0575,397,980 - 75,526,767 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0575,889,125 - 76,018,416 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
kinetochore  (IEA)
membrane  (IEA)
Swr1 complex  (IEA)

References
Additional References at PubMed
PMID:10964405  


Genomics

Comparative Map Data
CFDP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1575,313,165 - 75,442,686 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl575,313,192 - 75,442,686 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha575,290,315 - 75,419,490 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0575,626,973 - 75,799,481 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl575,626,973 - 75,805,114 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1575,562,799 - 75,691,748 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0575,397,980 - 75,526,767 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0575,889,125 - 76,018,416 (+)NCBIUU_Cfam_GSD_1.0
CFDP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381675,293,710 - 75,433,503 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1675,293,698 - 75,433,503 (-)EnsemblGRCh38hg38GRCh38
GRCh371675,327,608 - 75,467,401 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361673,885,109 - 74,024,888 (-)NCBINCBI36Build 36hg18NCBI36
Build 341673,885,108 - 74,024,888NCBI
Celera1659,621,931 - 59,761,694 (-)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1661,078,149 - 61,219,205 (-)NCBIHuRef
CHM1_11676,740,054 - 76,879,720 (-)NCBICHM1_1
T2T-CHM13v2.01681,340,442 - 81,479,377 (-)NCBIT2T-CHM13v2.0
Cfdp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398112,493,314 - 112,580,969 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8112,495,123 - 112,580,923 (-)EnsemblGRCm39 Ensembl
GRCm388111,766,682 - 111,854,337 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,768,491 - 111,854,291 (-)EnsemblGRCm38mm10GRCm38
MGSCv378114,292,373 - 114,378,210 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368114,655,146 - 114,740,983 (-)NCBIMGSCv36mm8
Celera8115,996,901 - 116,082,919 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.98NCBI
Cfdp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81956,627,596 - 56,733,099 (-)NCBIGRCr8
mRatBN7.21939,718,313 - 39,823,824 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1939,718,347 - 39,823,824 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1946,593,774 - 46,682,060 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01947,247,092 - 47,335,387 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01949,491,050 - 49,579,816 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01943,989,596 - 44,078,320 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,971,474 - 44,078,336 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,796,566 - 54,885,236 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,703,586 - 41,792,613 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11941,708,466 - 41,797,494 (-)NCBI
Celera1939,095,820 - 39,183,251 (-)NCBICelera
Cytogenetic Map19q12NCBI
Cfdp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554842,085,379 - 2,203,177 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554842,085,372 - 2,203,177 (+)NCBIChiLan1.0ChiLan1.0
CFDP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21885,012,648 - 85,155,022 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11690,934,992 - 91,075,676 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01655,864,016 - 56,003,243 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11675,214,347 - 75,351,959 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1675,214,588 - 75,351,811 (-)Ensemblpanpan1.1panPan2
Cfdp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934935,424,430 - 35,535,554 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647524,052,963 - 24,164,679 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647524,053,558 - 24,164,674 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFDP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl612,223,748 - 12,354,177 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1612,223,701 - 12,354,180 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2612,077,068 - 12,196,905 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFDP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,775,840 - 60,919,109 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,773,986 - 60,919,110 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604715,140,778 - 15,283,531 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfdp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474611,489,274 - 11,632,085 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474611,489,462 - 11,631,861 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CFDP1
1077 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000031953   ⟹   ENSCAFP00000029752
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl575,313,192 - 75,442,686 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042575   ⟹   ENSCAFP00845033380
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl575,626,973 - 75,799,481 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042663   ⟹   ENSCAFP00845033455
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl575,626,989 - 75,805,114 (+)Ensembl
RefSeq Acc Id: NM_001287118   ⟹   NP_001274047
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1575,313,192 - 75,442,686 (+)NCBI
Dog10K_Boxer_Tasha575,290,315 - 75,419,490 (+)NCBI
ROS_Cfam_1.0575,626,973 - 75,799,481 (+)NCBI
UMICH_Zoey_3.1575,562,799 - 75,691,748 (+)NCBI
UNSW_CanFamBas_1.0575,397,980 - 75,526,767 (+)NCBI
UU_Cfam_GSD_1.0575,889,125 - 76,018,416 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001274047 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAB46833 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000029752.4
  ENSCAFP00000074660.1
  ENSCAFP00030003761.1
  ENSCAFP00040019049.1
  ENSCAFP00845033380
  ENSCAFP00845033380.1
  ENSCAFP00845033455.1
RefSeq Acc Id: NP_001274047   ⟸   NM_001287118
- UniProtKB: A0A8C0JLF8 (UniProtKB/TrEMBL),   A0A8C0SC82 (UniProtKB/TrEMBL),   A0A8I3S496 (UniProtKB/TrEMBL),   A0A8I3PQV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000029752   ⟸   ENSCAFT00000031953
RefSeq Acc Id: ENSCAFP00845033380   ⟸   ENSCAFT00845042575
RefSeq Acc Id: ENSCAFP00845033455   ⟸   ENSCAFT00845042663
Protein Domains
BCNT-C

Promoters
RGD ID:13683424
Promoter ID:EPDNEW_C1494
Type:initiation region
Name:CFDP1_1
Description:craniofacial development protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1575,313,229 - 75,313,289EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000020077 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002300 UniProtKB/TrEMBL
  ENSCAFG00040011911 UniProtKB/TrEMBL
  ENSCAFG00845024118 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031953.5 UniProtKB/TrEMBL
  ENSCAFT00000101268.1 UniProtKB/TrEMBL
  ENSCAFT00030004237.1 UniProtKB/TrEMBL
  ENSCAFT00040021957.1 UniProtKB/TrEMBL
  ENSCAFT00845042575 ENTREZGENE
  ENSCAFT00845042575.1 UniProtKB/TrEMBL
  ENSCAFT00845042663.1 UniProtKB/TrEMBL
InterPro BCNT-C UniProtKB/TrEMBL
  Swc5/CFDP1/2 UniProtKB/TrEMBL
KEGG Report cfa:403675 UniProtKB/TrEMBL
NCBI Gene CFDP1 ENTREZGENE
PANTHER CRANIOFACIAL DEVELOPMENT PROTEIN 1 UniProtKB/TrEMBL
  CRANIOFACIAL DEVELOPMENT PROTEIN 1 UniProtKB/TrEMBL
Pfam BCNT UniProtKB/TrEMBL
PROSITE BCNT_C UniProtKB/TrEMBL
UniProt A0A8C0JLF8 ENTREZGENE
  A0A8C0SC82 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PQV0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S496 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SP30_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:39175 ENTREZGENE