MGP (matrix Gla protein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: MGP (matrix Gla protein) Canis lupus familiaris
Analyze
Symbol: MGP
Name: matrix Gla protein
RGD ID: 12433953
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN branching morphogenesis of an epithelial tube (ortholog); lung development (ortholog); ossification (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); arteriosclerosis (ortholog); autosomal dominant intellectual developmental disorder 6 (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog); extracellular space (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100856382
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12731,735,301 - 31,738,673 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2731,734,660 - 31,738,673 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2714,710,348 - 14,713,720 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02732,041,879 - 32,045,251 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2732,041,914 - 32,045,250 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12731,931,196 - 31,934,568 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02731,889,700 - 31,893,072 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02714,442,533 - 14,445,905 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MGP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12731,735,301 - 31,738,673 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2731,734,660 - 31,738,673 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2714,710,348 - 14,713,720 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02732,041,879 - 32,045,251 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2732,041,914 - 32,045,250 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12731,931,196 - 31,934,568 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02731,889,700 - 31,893,072 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02714,442,533 - 14,445,905 (-)NCBIUU_Cfam_GSD_1.0
MGP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381214,880,864 - 14,885,854 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1214,880,864 - 14,885,857 (-)EnsemblGRCh38hg38GRCh38
GRCh371215,033,798 - 15,038,788 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,926,094 - 14,930,095 (-)NCBINCBI36Build 36hg18NCBI36
Build 341214,926,093 - 14,930,095NCBI
Celera1220,179,103 - 20,183,841 (-)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1214,803,571 - 14,808,309 (-)NCBIHuRef
CHM1_11215,000,196 - 15,004,934 (-)NCBICHM1_1
T2T-CHM13v2.01214,758,207 - 14,763,197 (-)NCBIT2T-CHM13v2.0
Mgp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,849,433 - 136,852,821 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,849,433 - 136,852,821 (-)EnsemblGRCm39 Ensembl
GRCm386136,872,435 - 136,875,823 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,872,435 - 136,875,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv376136,820,956 - 136,824,326 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366136,836,632 - 136,840,001 (-)NCBIMGSCv36mm8
Celera6139,906,448 - 139,909,847 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map666.72NCBI
Mgp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,497,472 - 171,500,888 (-)NCBIGRCr8
mRatBN7.24169,766,290 - 169,769,612 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,766,279 - 169,769,667 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4176,061,104 - 176,064,425 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,842,750 - 171,846,072 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,466,773 - 170,470,094 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,856,783 - 170,860,105 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,856,751 - 170,860,225 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04235,113,783 - 235,117,184 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44173,910,595 - 173,913,917 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14174,155,718 - 174,159,041 (-)NCBI
Celera4158,349,108 - 158,352,430 (-)NCBICelera
Cytogenetic Map4q43NCBI
Mgp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541311,615,078 - 11,618,024 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541311,614,851 - 11,618,090 (-)NCBIChiLan1.0ChiLan1.0
MGP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21020,333,390 - 20,337,473 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,330,153 - 20,334,140 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01214,887,806 - 14,891,796 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11215,284,635 - 15,288,794 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,284,883 - 15,288,523 (-)Ensemblpanpan1.1panPan2
Mgp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494592,873,783 - 92,878,213 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365872,601,312 - 2,605,870 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365872,601,419 - 2,605,848 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl557,665,248 - 57,669,764 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1557,665,272 - 57,669,360 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2561,054,230 - 61,058,317 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MGP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,776,668 - 14,780,796 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,776,209 - 14,780,947 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606920,529,753 - 20,533,788 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mgp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475223,146,166 - 23,149,048 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475223,146,025 - 23,149,266 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MGP
52 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High 1 5 1 6 1
Medium 4 5 17 6 6 6 5 6 9 4 5
Low 3 8
Below cutoff

Sequence


RefSeq Acc Id: ENSCAFT00000020575   ⟹   ENSCAFP00000019096
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2731,734,660 - 31,738,673 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845037326   ⟹   ENSCAFP00845029236
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2732,041,914 - 32,045,250 (+)Ensembl
RefSeq Acc Id: XM_003639976   ⟹   XP_003640024
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12731,735,301 - 31,738,673 (+)NCBI
Dog10K_Boxer_Tasha2714,710,348 - 14,713,720 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038437883   ⟹   XP_038293811
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02732,041,879 - 32,045,251 (+)NCBI
RefSeq Acc Id: XM_038514295   ⟹   XP_038370223
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12731,931,196 - 31,934,568 (+)NCBI
RefSeq Acc Id: XM_038576142   ⟹   XP_038432070
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02714,442,533 - 14,445,905 (-)NCBI
RefSeq Acc Id: XM_038640343   ⟹   XP_038496271
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02731,889,700 - 31,893,072 (+)NCBI
RefSeq Acc Id: XP_003640024   ⟸   XM_003639976
- UniProtKB: A0A8C0PQI6 (UniProtKB/TrEMBL),   A0A8I3PM69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000019096   ⟸   ENSCAFT00000020575
RefSeq Acc Id: XP_038370223   ⟸   XM_038514295
RefSeq Acc Id: XP_038496271   ⟸   XM_038640343
RefSeq Acc Id: XP_038293811   ⟸   XM_038437883
- UniProtKB: A0A8C0PQI6 (UniProtKB/TrEMBL),   A0A8I3PM69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038432070   ⟸   XM_038576142
- UniProtKB: A0A8C0PQI6 (UniProtKB/TrEMBL),   A0A8I3PM69 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845029236   ⟸   ENSCAFT00845037326
Protein Domains
Gla


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012963 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025794 UniProtKB/TrEMBL
  ENSCAFG00040022820 UniProtKB/TrEMBL
  ENSCAFG00845021156 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000020575.5 UniProtKB/TrEMBL
  ENSCAFT00000095511.1 UniProtKB/TrEMBL
  ENSCAFT00030047620.1 UniProtKB/TrEMBL
  ENSCAFT00040042413.1 UniProtKB/TrEMBL
  ENSCAFT00845037326 ENTREZGENE
  ENSCAFT00845037326.1 UniProtKB/TrEMBL
InterPro GLA-like_dom_SF UniProtKB/TrEMBL
  GLA_domain UniProtKB/TrEMBL
  MGP UniProtKB/TrEMBL
  Osteocalcin/MGP UniProtKB/TrEMBL
KEGG Report cfa:100856382 UniProtKB/TrEMBL
NCBI Gene MGP ENTREZGENE
PANTHER MATRIX GLA PROTEIN UniProtKB/TrEMBL
  PTHR10109 UniProtKB/TrEMBL
PRINTS GLABONE UniProtKB/TrEMBL
PROSITE GLA_1 UniProtKB/TrEMBL
  GLA_2 UniProtKB/TrEMBL
SMART GLA UniProtKB/TrEMBL
Superfamily-SCOP SSF57630 UniProtKB/TrEMBL
UniProt A0A8C0PQI6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PM69 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TPG3_CANLF UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 MGP  matrix Gla protein  LOC100856382  matrix Gla protein  Symbol and/or name change 5135510 APPROVED
2021-01-12 LOC100856382  matrix Gla protein  MGP  matrix Gla protein  Symbol and/or name change 5135510 APPROVED