ARL6IP4 (ADP ribosylation factor like GTPase 6 interacting protein 4) - Rat Genome Database

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Gene: ARL6IP4 (ADP ribosylation factor like GTPase 6 interacting protein 4) Canis lupus familiaris
Analyze
Symbol: ARL6IP4
Name: ADP ribosylation factor like GTPase 6 interacting protein 4
RGD ID: 12432325
Description: ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nuclear speck (inferred); nucleolus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP-ribosylation factor-like protein 6-interacting protein 4; ADP-ribosylation-like factor 6 interacting protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,522,881 - 6,525,195 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,523,070 - 6,525,123 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,684,500 - 6,686,814 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,772,886 - 6,775,200 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,773,076 - 6,775,129 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,705,755 - 6,708,069 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,797,207 - 6,799,521 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,751,240 - 6,753,554 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear speck  (IEA)
nucleolus  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
ARL6IP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,522,881 - 6,525,195 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,523,070 - 6,525,123 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,684,500 - 6,686,814 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,772,886 - 6,775,200 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,773,076 - 6,775,129 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,705,755 - 6,708,069 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,797,207 - 6,799,521 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,751,240 - 6,753,554 (-)NCBIUU_Cfam_GSD_1.0
ARL6IP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812122,980,233 - 122,982,909 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12122,980,060 - 122,982,913 (+)EnsemblGRCh38hg38GRCh38
GRCh3712123,464,780 - 123,467,456 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,030,833 - 122,033,413 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412121,989,759 - 121,992,340NCBI
Celera12123,057,673 - 123,060,253 (+)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12120,425,747 - 120,428,600 (+)NCBIHuRef
CHM1_112123,432,925 - 123,435,778 (+)NCBICHM1_1
T2T-CHM13v2.012122,976,758 - 122,979,434 (+)NCBIT2T-CHM13v2.0
Arl6ip4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,254,171 - 124,256,258 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,254,152 - 124,256,259 (+)EnsemblGRCm39 Ensembl
GRCm385124,116,108 - 124,118,195 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,116,089 - 124,118,196 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,566,117 - 124,568,204 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,376,726 - 124,378,813 (+)NCBIMGSCv36mm8
Celera5121,192,330 - 121,194,510 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.39NCBI
Arl6ip4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,140,566 - 38,142,711 (-)NCBIGRCr8
mRatBN7.21232,479,623 - 32,481,768 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,479,625 - 32,481,799 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,659,779 - 33,661,924 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,271,123 - 34,273,268 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,323,021 - 33,325,166 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,904,376 - 37,906,521 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,904,379 - 37,906,521 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,776,739 - 39,778,884 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,603,784 - 33,605,929 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,467,172 - 33,469,332 (-)NCBI
Celera1234,167,882 - 34,170,027 (-)NCBICelera
Cytogenetic Map12q15NCBI
Arl6ip4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,804,531 - 5,805,517 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,804,393 - 5,807,460 (-)NCBIChiLan1.0ChiLan1.0
ARL6IP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,076,098 - 131,078,816 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,072,474 - 131,075,192 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012120,586,561 - 120,589,404 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112124,821,224 - 124,824,088 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12124,821,224 - 124,824,088 (+)Ensemblpanpan1.1panPan2
Arl6ip4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,806,251 - 157,809,241 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365581,669,934 - 1,672,550 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365581,670,185 - 1,673,156 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL6IP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,886,042 - 29,888,470 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,886,043 - 29,888,512 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,574,588 - 31,577,068 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARL6IP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,320,310 - 118,323,229 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037126,989,637 - 126,991,961 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arl6ip4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474722,980,657 - 22,982,851 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474722,980,665 - 22,982,851 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARL6IP4
16 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 19 3 6 3 6 6 12 8 10 6
Low 3 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000012269   ⟹   ENSCAFP00000011372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl266,523,070 - 6,525,123 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845034781   ⟹   ENSCAFP00845027239
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl266,773,076 - 6,775,129 (-)Ensembl
RefSeq Acc Id: XM_014107937   ⟹   XP_013963412
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1266,522,881 - 6,525,195 (-)NCBI
Dog10K_Boxer_Tasha266,684,500 - 6,686,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014107938   ⟹   XP_013963413
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1266,522,881 - 6,525,194 (-)NCBI
Dog10K_Boxer_Tasha266,684,500 - 6,686,814 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038436471   ⟹   XP_038292399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0266,772,886 - 6,775,200 (-)NCBI
RefSeq Acc Id: XM_038436472   ⟹   XP_038292400
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0266,772,886 - 6,775,200 (-)NCBI
RefSeq Acc Id: XM_038511390   ⟹   XP_038367318
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1266,705,755 - 6,708,069 (-)NCBI
RefSeq Acc Id: XM_038511391   ⟹   XP_038367319
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1266,705,755 - 6,708,069 (-)NCBI
RefSeq Acc Id: XM_038574875   ⟹   XP_038430803
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0266,751,240 - 6,753,554 (-)NCBI
RefSeq Acc Id: XM_038574877   ⟹   XP_038430805
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0266,751,240 - 6,753,554 (-)NCBI
RefSeq Acc Id: XM_038639062   ⟹   XP_038494990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,797,207 - 6,799,521 (-)NCBI
RefSeq Acc Id: XM_038639064   ⟹   XP_038494992
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0266,797,207 - 6,799,521 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013963412   ⟸   XM_014107937
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KSW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013963413   ⟸   XM_014107938
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TMQ1 (UniProtKB/TrEMBL),   A0A8I3P7E4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000011372   ⟸   ENSCAFT00000012269
RefSeq Acc Id: XP_038367319   ⟸   XM_038511391
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038367318   ⟸   XM_038511390
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038494992   ⟸   XM_038639064
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038494990   ⟸   XM_038639062
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038292400   ⟸   XM_038436472
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TMQ1 (UniProtKB/TrEMBL),   A0A8I3P7E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038292399   ⟸   XM_038436471
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KSW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430805   ⟸   XM_038574877
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TMQ1 (UniProtKB/TrEMBL),   A0A8I3P7E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038430803   ⟸   XM_038574875
- Peptide Label: isoform X1
- UniProtKB: A0A8C0KSW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845027239   ⟸   ENSCAFT00845034781

Promoters
RGD ID:13687874
Promoter ID:EPDNEW_C5942
Type:multiple initiation site
Name:ARL6IP4_1
Description:ADP ribosylation factor like GTPase 6 interacting protein 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1266,525,151 - 6,525,211EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000007665 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025898 UniProtKB/TrEMBL
  ENSCAFG00040024347 UniProtKB/TrEMBL
  ENSCAFG00845019730 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000012269.6 UniProtKB/TrEMBL
  ENSCAFT00030047821.1 UniProtKB/TrEMBL
  ENSCAFT00040045345.1 UniProtKB/TrEMBL
  ENSCAFT00845034781 ENTREZGENE
  ENSCAFT00845034781.1 UniProtKB/TrEMBL
InterPro Nucl_RNA-splicing_assoc_SR-25 UniProtKB/TrEMBL
NCBI Gene ARL6IP4 ENTREZGENE
Pfam SR-25 UniProtKB/TrEMBL
UniProt A0A8C0KSW7 ENTREZGENE
  A0A8C0TMQ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P7E4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38119 ENTREZGENE