Advanced Search (OLGA)

Gene: GABRA6 (gamma-aminobutyric acid type A receptor subunit alpha6) Canis lupus familiaris

Analyze

Symbol:

GABRA6

Name:

gamma-aminobutyric acid type A receptor subunit alpha6

RGD ID:

12430858

Description:

ENCODES a protein that exhibits diazepam binding (ortholog); GABA-gated chloride ion channel activity (ortholog); heterocyclic compound binding (ortholog); INVOLVED IN response to ethanol (ortholog); synaptic transmission, GABAergic (ortholog); ASSOCIATED WITH Binge Drinking (ortholog); childhood absence epilepsy (ortholog); Cushing Syndrome (ortholog); FOUND IN dendrite (ortholog); GABA-ergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

gamma-aminobutyric acid receptor subunit alpha-6; gamma-aminobutyric acid type A receptor alpha6 subunit

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	49,208,691 - 49,225,754 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	49,208,605 - 49,226,212 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	49,099,501 - 49,116,828 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	49,639,863 - 49,657,617 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	49,640,367 - 49,657,815 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	49,446,978 - 49,464,698 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	49,579,983 - 49,597,659 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	50,103,326 - 50,121,062 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Binge Drinking (ISO)

childhood absence epilepsy (ISO)

Cushing Syndrome (ISO)

Idiopathic Generalized Epilepsy (ISO)

intellectual disability (ISO)

middle cerebral artery infarction (ISO)

obesity (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chloride transmembrane transport (IBA,IEA)

chloride transport (IEA)

gamma-aminobutyric acid signaling pathway (IBA,IEA)

inhibitory synapse assembly (IBA)

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (IEA)

regulation of postsynaptic membrane potential (IEA)

response to ethanol (ISO)

synaptic transmission, GABAergic (IBA,ISO)

Cellular Component

cerebellar Golgi cell to granule cell synapse (IEA)

chloride channel complex (IEA)

dendrite (ISO)

dendrite membrane (IBA)

GABA-A receptor complex (IBA)

GABA-ergic synapse (ISO)

hippocampal mossy fiber to CA3 synapse (ISO)

membrane (IEA)

neuronal cell body membrane (ISO)

plasma membrane (IEA)

postsynapse (IBA)

postsynaptic membrane (IEA,ISO)

postsynaptic specialization membrane (ISO)

presynaptic membrane (ISO)

receptor complex (ISO)

synapse (IEA)

Molecular Function

benzodiazepine receptor activity (IBA)

chloride channel activity (IBA,IEA)

diazepam binding (ISO)

extracellular ligand-gated monoatomic ion channel activity (IEA)

GABA-A receptor activity (IBA,IEA)

GABA-gated chloride ion channel activity (IBA,ISO)

heterocyclic compound binding (ISO)

inhibitory extracellular ligand-gated monoatomic ion channel activity (ISO)

monoatomic ion channel activity (IEA)

protein-containing complex binding (ISO)

transmembrane signaling receptor activity (IEA)

transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

GABRA6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	49,208,691 - 49,225,754 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	49,208,605 - 49,226,212 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	49,099,501 - 49,116,828 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	49,639,863 - 49,657,617 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	49,640,367 - 49,657,815 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	49,446,978 - 49,464,698 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	49,579,983 - 49,597,659 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	50,103,326 - 50,121,062 (-)	NCBI		UU_Cfam_GSD_1.0

GABRA6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	161,685,721 - 161,702,592 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	161,547,063 - 161,702,593 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	161,112,727 - 161,129,598 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	161,045,236 - 161,062,176 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	161,045,547 - 161,061,697	NCBI
Celera	5	157,144,516 - 157,161,456 (+)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI
HuRef	5	156,205,057 - 156,221,975 (+)	NCBI		HuRef
CHM1_1	5	160,545,077 - 160,562,018 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	162,214,591 - 162,231,464 (+)	NCBI		T2T-CHM13v2.0

Gabra6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	42,197,264 - 42,211,977 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	42,197,264 - 42,211,899 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	42,306,437 - 42,321,072 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	42,306,437 - 42,321,072 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	42,119,939 - 42,134,553 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	42,149,861 - 42,164,431 (-)	NCBI		MGSCv36	mm8
Celera	11	46,139,046 - 46,153,582 (-)	NCBI		Celera
Cytogenetic Map	11	A5	NCBI
cM Map	11	25.03	NCBI

Gabra6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	27,311,965 - 27,327,337 (-)	NCBI		GRCr8
mRatBN7.2	10	26,810,411 - 26,825,768 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	26,810,423 - 26,825,769 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	31,546,343 - 31,560,549 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	31,034,879 - 31,049,081 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	26,521,557 - 26,535,757 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	27,847,447 - 27,862,896 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	27,847,439 - 27,862,868 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	27,691,630 - 27,706,971 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	27,474,071 - 27,489,074 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	27,475,119 - 27,490,123 (-)	NCBI
Celera	10	26,323,497 - 26,337,672 (-)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

Gabra6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	15,464,368 - 15,480,330 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	15,464,426 - 15,479,653 (+)	NCBI	ChiLan1.0	ChiLan1.0

GABRA6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	156,868,647 - 156,885,816 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	155,008,214 - 155,025,362 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	157,072,915 - 157,089,994 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	163,767,304 - 163,784,334 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	163,767,304 - 163,784,331 (+)	Ensembl	panpan1.1		panPan2

Gabra6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	103,533,076 - 103,548,851 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936515	1,980,824 - 1,998,053 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936515	1,982,415 - 1,997,740 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GABRA6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	61,855,468 - 61,872,279 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	61,855,698 - 61,872,503 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	67,083,554 - 67,100,297 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GABRA6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	64,020,770 - 64,038,419 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	64,021,842 - 64,039,563 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	13,515,669 - 13,532,119 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gabra6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	27,910,641 - 27,926,376 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	27,910,692 - 27,926,104 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in GABRA6
199 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	mesenchyme	mesoderm	nervous system	reproductive system
10	5	1	1	9	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022417729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038473759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038473760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038599140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038599141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_546263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000027311 ⟹ ENSCAFP00000025398

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	49,208,605 - 49,226,212 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000061151 ⟹ ENSCAFP00000045596

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	49,208,605 - 49,226,212 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000075528 ⟹ ENSCAFP00000048824

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	49,215,686 - 49,226,212 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845001363 ⟹ ENSCAFP00845001052

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	49,640,367 - 49,657,815 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845001376 ⟹ ENSCAFP00845001062

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	49,647,469 - 49,657,815 (-)	Ensembl

RefSeq Acc Id:

XM_022417729 ⟹ XP_022273437

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	4	49,208,691 - 49,225,754 (-)	NCBI
Dog10K_Boxer_Tasha	4	49,099,501 - 49,116,828 (-)	NCBI

Sequence:

show sequence

CCCTTTGGAACATAATCTCAATCAGCAAGATGCCACTGCTTTCCAGATTTTCTCACAGGGCCCT
GCTAATTCCATGCCAAAACTAGCTGTGGATATCTTCCTTCTAATCTCCCCTAGTGCCTTATTCG
ATTATTGTCACTGCTCTCCGACCATACACTGTCTCTTCAGACTCTCATTTCCCAATTGAGTCTA
CCAGAGGAGGCTGAGTGTCCATCAGGATGTAGTCTAAGACCACAAGCCACCTTTTTCCACACGA
GAAGACAGAAGCAAGAACAAGAGAGTAAAGGGAACCTTCAAAGTTTTGCTGGCAACCTCTTCAT
CTACAGATTACTGGCTGGATGCAAACAGGGAAAAGAGATATGAGGGGTCTGGATGATTACTCTA
GTTGATTGGCAAAGGGGAGCTTGTTAAGAGGGAGGAGAACCTAGGAGGAGGGTGAACTGGACGT
TGCAGTGCACTGCAGGATGGCGTCGCCTCTGCCCTTGTTATATATTATTCTATGGGTAGAAAAT
ACCCTAGGGAAACTTGAAGATGAAGGAAACTTCTACTCCAAAAACATCAGTCGGATCCTGGACA
ACTTGCTTGAAGGCTATGACAATCGGCTGCGGCCAGGATTTGGAGGTGCTGTTACTGAAGTCAA
AACAGACATTTATGTGACCAGTTTTGGGCCTGTGTCAGACGTGGAGATGGAGTATACAATGGAC
GTTTTCTTCCGCCAGACTTGGACTGATGAGAGGTTAAAGTTTGGGGGACCAACTGAGATTTTGA
GTTTGAATAACCTGATGGTCAGTAAAATCTGGACACCTGACACTTTTTTCAGGAATGGCAAAAA
ATCAATTGCACACAATATGACAACCCCTAATAAACTCTTCAGAATAATGCAGAATGGAACCATT
TTATATACCATGAGGCTTACCATCAATGCTGACTGTCCTATGAGGCTGGTTAACTTTCCTATGG
ATGGGCATGCTTGTCCACTCAAGTTTGGGAGTTATGCTTACCCCAAAAGTGAAATCATATATAC
ATGGAAGAAAGGACCACTTTACTCAGTCGAAGTCCCAGAAGAATCTTCAAGTCTCCTCCAGTAT
GATCTGATTGGACAAACAGTATCTAGTGAAACAATTAAATCTAACACAGGTGAATACGTAATAA
TGACAGTTTATTTCCACTTGCAAAGGAAGATGGGCTACTTCATGATACAGATATACACTCCTTG
CATTATGACAGTCATTCTTTCCCAGGTGTCCTTCTGGATTAATAAGGAGTCTGTCCCGGCAAGA
ACTGTCTTTGGGATCACCACTGTTTTAACCATGACCACATTAAGCATCAGTGCCCGGCACTCCT
TGCCAAAAGTGTCATATGCAACTGCCATGGATTGGTTTATAGCTGTTTGCTTTGCTTTCGTCTT
CTCCGCTCTTATTGAATTTGCGGCTGTCAACTATTTTACCAATCTTCAGACACAGAAGGCCAAA
AGGAGGGCACAGAATGCAGCCTCACCCCCAGTTACAATATCAAAAGCAACTGAACCCTTGGAAG
CTGAGATTGTATTGCATCCTGATTCCAAGTATCATCTGAAGAAAAGAATCACCTCTCTGACTTT
GCCAATAGTTCCATCCCCTGAGGCCAGCAAAGTCCTCACAAGAGCTCCCATCTTGCAATCAACA
CCTGTCACACCCCCACCACTCTCTCCAGCCTTTGGAGGCACCAGTAAAATAGACCAGTATTCTC
GGATTCTCTTCCCAGTTGCATTTGCAGGATTTAACCTTGTATACTGGGTAGTTTACCTTTCCAA
AGACACAATGGAAGTGAGCAGCAGTGTTGAATAGCTTGCAGCCAAGACAACTTGTATTCTATAA
AGCTAGAGAGAAGACTTTCCTTAAGTATGAAGAAATGAAGAGACTACCTCTACCCAGTGTTAGT
GTCCCTGGTGATTCTAAGAAGTAGAAGGTGCGGCACAGGCAGGATCAGTCATCTGGCTCTAAAC
AAAGCACCTGGGTGGCTCAGCAGTTGAGCATCTGCCTTCGGCTCAGGTCATGATCCCGGGTCCT
GGGATCGAGTCCCACATCAGTCTCCCTGCAGGGAGCC

hide sequence

RefSeq Acc Id:

XM_038473759 ⟹ XP_038329687

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	49,448,017 - 49,464,697 (-)	NCBI

RefSeq Acc Id:

XM_038473760 ⟹ XP_038329688

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	49,446,978 - 49,464,698 (-)	NCBI

RefSeq Acc Id:

XM_038534839 ⟹ XP_038390767

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	50,104,365 - 50,121,061 (-)	NCBI

RefSeq Acc Id:

XM_038534840 ⟹ XP_038390768

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	50,103,326 - 50,121,062 (-)	NCBI

RefSeq Acc Id:

XM_038599140 ⟹ XP_038455068

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	49,581,022 - 49,597,658 (-)	NCBI

RefSeq Acc Id:

XM_038599141 ⟹ XP_038455069

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	49,579,983 - 49,597,659 (-)	NCBI

RefSeq Acc Id:

XM_038663446 ⟹ XP_038519374

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	49,640,902 - 49,657,616 (-)	NCBI

RefSeq Acc Id:

XM_038663447 ⟹ XP_038519375

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	49,639,863 - 49,657,617 (-)	NCBI

RefSeq Acc Id:

XM_546263 ⟹ XP_546263

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	4	49,208,942 - 49,225,753 (-)	NCBI
Dog10K_Boxer_Tasha	4	49,100,540 - 49,116,827 (-)	NCBI

Sequence:

show sequence

CCTTTGGAACATAATCTCAATCAGCAAGATGCCACTGCTTTCCAGATTTTCTCACAGGGCCCTG
CTAATTCCATGCCAAAACTAGCTGTGGATATCTTCCTTCTAATCTCCCCTAGTGCCTTATTCGA
TTATTGTCACTGCTCTCCGACCATACACTGTCTCTTCAGACTCTCATTTCCCAATTGAGTCTAC
CAGAGGAGGCTGAGTGTCCATCAGGATGTAGTCTAAGACCACAAGCCACCTTTTTCCACACGAG
AAGACAGAAGCAAGAACAAGAGAGTAAAGGGAACCTTCAAAGTTTTGCTGGCAACCTCTTCATC
TACAGATTACTGGCTGGATGCAAACAGGGAAAAGAGATATGAGGGGTCTGGATGATTACTCTAG
TTGATTGGCAAAGGGGAGCTTGTTAAGAGGGAGGAGAACCTAGGAGGAGGGTGAACTGGACGTT
GCAGTGCACTGCAGGATGGCGTCGCCTCTGCCCTTGTTATATATTATTCTATGGGTAGAAAATA
CCCTAGGGAAACTTGAAGATGAAGGAAACTTCTACTCCAAAAACATCAGTCGGATCCTGGACAA
CTTGCTTGAAGGCTATGACAATCGGCTGCGGCCAGGATTTGGAGGTGCTGTTACTGAAGTCAAA
ACAGACATTTATGTGACCAGTTTTGGGCCTGTGTCAGACGTGGAGATGGAGTATACAATGGACG
TTTTCTTCCGCCAGACTTGGACTGATGAGAGGTTAAAGTTTGGGGGACCAACTGAGATTTTGAG
TTTGAATAACCTGATGGTCAGTAAAATCTGGACACCTGACACTTTTTTCAGGAATGGCAAAAAA
TCAATTGCACACAATATGACAACCCCTAATAAACTCTTCAGAATAATGCAGAATGGAACCATTT
TATATACCATGAGGCTTACCATCAATGCTGACTGTCCTATGAGGCTGGTTAACTTTCCTATGGA
TGGGCATGCTTGTCCACTCAAGTTTGGGAGTTATGCTTACCCCAAAAGTGAAATCATATATACA
TGGAAGAAAGGACCACTTTACTCAGTCGAAGTCCCAGAAGAATCTTCAAGTCTCCTCCAGTATG
ATCTGATTGGACAAACAGTATCTAGTGAAACAATTAAATCTAACACAGGTGAATACGTAATAAT
GACAGTTTATTTCCACTTGCAAAGGAAGATGGGCTACTTCATGATACAGATATACACTCCTTGC
ATTATGACAGTCATTCTTTCCCAGGTGTCCTTCTGGATTAATAAGGAGTCTGTCCCGGCAAGAA
CTGTCTTTGGGATCACCACTGTTTTAACCATGACCACATTAAGCATCAGTGCCCGGCACTCCTT
GCCAAAAGTGTCATATGCAACTGCCATGGATTGGTTTATAGCTGTTTGCTTTGCTTTCGTCTTC
TCCGCTCTTATTGAATTTGCGGCTGTCAACTATTTTACCAATCTTCAGACACAGAAGGCCAAAA
GGAGGGCACAGAATGCAGCCTCACCCCCAGTTACAATATCAAAAGCAACTGAACCCTTGGAAGC
TGAGATTGTATTGCATCCTGATTCCAAGTATCATCTGAAGAAAAGAATCACCTCTCTGACTTTG
CCAATAGTTCCATCCCCTGAGGCCAGCAAAGTCCTCACAAGAGCTCCCATCTTGCAATCAACAC
CTGTCACACCCCCACCACTCTCTCCAGCCTTTGGAGGCACCAGTAAAATAGACCAGTATTCTCG
GATTCTCTTCCCAGTTGCATTTGCAGGATTTAACCTTGTATACTGGGTAGTTTACCTTTCCAAA
GACACAATGGAAGTGAGCAGCAGTGTTGAATAGCTTGCAGCCAAGACAACTTGTATTCTGTAAG
TTCTTATTTTGTAGTATTAAGACTTGTATAGATGCTTTTCTGAAACATTGAAAATCTGTAACAC
ATAGCTTTGAGTAAGCATGTATGGGCCAAAAAGCAATAATGTTACTCCTCAGAACTAGAAGTTG
AAAGTTGTTGGAAAATATGACTTTTTTGTATGTTAGAGAAAAAATTTTAAGAGAATAAGATGTA
CTCAAGATGAATTTGCCAATCTTTGCCCTTCAGTGTTCAATATTTTAATTGTCACTGTGAATAG
CCTTTACCACAAAGAAGATAAACTAAGACATGCTGACACATCCAAAGGTGGCCTTAAAATACAT
TTATTTTGGCTTAGTTGTCAAAGAGAGCAAAATATAAATAGTCTAAATATTTATCAATAGGTTA
ATACCAGCATGTTGGAGACCTTTATGCCAGTAATATTGTTTTCAGCATCTTTGTACAGCCTGTA
TTGAGCTTAGCCATTTGTTTTTAACCTTGCTGTGCTGTTTTACCTCAATAAAAATAAATAATAA
AGTATGCATATGTACATAGCTTTAGTTGGACTGCAATACAGTGCTGTTTTATCTCATTAGGCTC
TCCTTTCAAAATAATATGCTCATCATAATTCCATGAAATTGTAGAAAAAAATAAGACTATAATG
GAGCCTTGTTATGACTGTGGCTATATCTCATATTTTTCACTTGAGTATACCACTAAATAAAACA
ATAATAAACATG

hide sequence

Protein Sequences


Protein RefSeqs	XP_022273437	(Get FASTA)	NCBI Sequence Viewer
	XP_038329687	(Get FASTA)	NCBI Sequence Viewer
	XP_038329688	(Get FASTA)	NCBI Sequence Viewer
	XP_038390767	(Get FASTA)	NCBI Sequence Viewer
	XP_038390768	(Get FASTA)	NCBI Sequence Viewer
	XP_038455068	(Get FASTA)	NCBI Sequence Viewer
	XP_038455069	(Get FASTA)	NCBI Sequence Viewer
	XP_038519374	(Get FASTA)	NCBI Sequence Viewer
	XP_038519375	(Get FASTA)	NCBI Sequence Viewer
	XP_546263	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000025398.4
	ENSCAFP00000048824.1
	ENSCAFP00030023596.1
	ENSCAFP00030023830.1
	ENSCAFP00040004666.1
	ENSCAFP00040004684.1
	ENSCAFP00845001052
	ENSCAFP00845001052.1
	ENSCAFP00845001062.1

RefSeq Acc Id:

XP_546263 ⟸ XM_546263

- UniProtKB:

A0A8C0JJC0 (UniProtKB/TrEMBL), A0A8C0PW20 (UniProtKB/TrEMBL), A0A8I3MFI4 (UniProtKB/TrEMBL), A0A8C0RKF4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASPLPLLYIILWVENTLGKLEDEGNFYSKNISRILDNLLEGYDNRLRPGFGGAVTEVKTDIYV
TSFGPVSDVEMEYTMDVFFRQTWTDERLKFGGPTEILSLNNLMVSKIWTPDTFFRNGKKSIAHN
MTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGP
LYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVI
LSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIE
FAAVNYFTNLQTQKAKRRAQNAASPPVTISKATEPLEAEIVLHPDSKYHLKKRITSLTLPIVPS
PEASKVLTRAPILQSTPVTPPPLSPAFGGTSKIDQYSRILFPVAFAGFNLVYWVVYLSKDTMEV
SSSVE

hide sequence

RefSeq Acc Id:

XP_022273437 ⟸ XM_022417729

- UniProtKB:

A0A8C0JJC0 (UniProtKB/TrEMBL), A0A8C0PW20 (UniProtKB/TrEMBL), A0A8I3MFI4 (UniProtKB/TrEMBL), A0A8C0RKF4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASPLPLLYIILWVENTLGKLEDEGNFYSKNISRILDNLLEGYDNRLRPGFGGAVTEVKTDIYV
TSFGPVSDVEMEYTMDVFFRQTWTDERLKFGGPTEILSLNNLMVSKIWTPDTFFRNGKKSIAHN
MTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKGP
LYSVEVPEESSSLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMGYFMIQIYTPCIMTVI
LSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIE
FAAVNYFTNLQTQKAKRRAQNAASPPVTISKATEPLEAEIVLHPDSKYHLKKRITSLTLPIVPS
PEASKVLTRAPILQSTPVTPPPLSPAFGGTSKIDQYSRILFPVAFAGFNLVYWVVYLSKDTMEV
SSSVE

hide sequence

Ensembl Acc Id:

ENSCAFP00000025398 ⟸ ENSCAFT00000027311

Ensembl Acc Id:

ENSCAFP00000045596 ⟸ ENSCAFT00000061151

Ensembl Acc Id:

ENSCAFP00000048824 ⟸ ENSCAFT00000075528

RefSeq Acc Id:

XP_038329688 ⟸ XM_038473760

RefSeq Acc Id:

XP_038329687 ⟸ XM_038473759

RefSeq Acc Id:

XP_038455069 ⟸ XM_038599141

RefSeq Acc Id:

XP_038455068 ⟸ XM_038599140

RefSeq Acc Id:	XP_038519375 ⟸ XM_038663447
- UniProtKB:	A0A8C0JJC0 (UniProtKB/TrEMBL), A0A8C0PW20 (UniProtKB/TrEMBL), A0A8I3MFI4 (UniProtKB/TrEMBL), A0A8C0RKF4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038519374 ⟸ XM_038663446
- UniProtKB:	A0A8C0JJC0 (UniProtKB/TrEMBL), A0A8C0PW20 (UniProtKB/TrEMBL), A0A8I3MFI4 (UniProtKB/TrEMBL), A0A8C0RKF4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038390768 ⟸ XM_038534840
- UniProtKB:	A0A8C0JJC0 (UniProtKB/TrEMBL), A0A8C0PW20 (UniProtKB/TrEMBL), A0A8C0RKF4 (UniProtKB/TrEMBL), A0A8I3MFI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038390767 ⟸ XM_038534839
- UniProtKB:	A0A8C0JJC0 (UniProtKB/TrEMBL), A0A8C0PW20 (UniProtKB/TrEMBL), A0A8C0RKF4 (UniProtKB/TrEMBL), A0A8I3MFI4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845001052 ⟸ ENSCAFT00845001363

Ensembl Acc Id:

ENSCAFP00845001062 ⟸ ENSCAFT00845001376

Protein Domains

Neurotransmitter-gated ion-channel ligand-binding Neurotransmitter-gated ion-channel transmembrane

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000017244	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030014655	UniProtKB/TrEMBL
	ENSCAFG00030014706	UniProtKB/TrEMBL
	ENSCAFG00040002850	UniProtKB/TrEMBL
	ENSCAFG00845000820	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000027311.5	UniProtKB/TrEMBL
	ENSCAFT00000075528.2	UniProtKB/TrEMBL
	ENSCAFT00030027035.1	UniProtKB/TrEMBL
	ENSCAFT00030027310.1	UniProtKB/TrEMBL
	ENSCAFT00040005432.1	UniProtKB/TrEMBL
	ENSCAFT00040005453.1	UniProtKB/TrEMBL
	ENSCAFT00845001363	ENTREZGENE
	ENSCAFT00845001363.1	UniProtKB/TrEMBL
	ENSCAFT00845001376.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.390	UniProtKB/TrEMBL
	2.70.170.10	UniProtKB/TrEMBL
InterPro	GABAA/Glycine_rcpt	UniProtKB/TrEMBL
	GABAAa_rcpt	UniProtKB/TrEMBL
	GABBAa6_rcpt	UniProtKB/TrEMBL
	Gabra-1-6_TM	UniProtKB/TrEMBL
	Neur_chan_lig-bd	UniProtKB/TrEMBL
	Neur_chan_lig-bd_sf	UniProtKB/TrEMBL
	Neur_channel	UniProtKB/TrEMBL
	Neuro-gated_channel_TM_sf	UniProtKB/TrEMBL
	Neuro_actylchol_rec	UniProtKB/TrEMBL
	Neurotrans-gated_channel_TM	UniProtKB/TrEMBL
	Neurotransmitter_ion_chnl_CS	UniProtKB/TrEMBL
NCBI Gene	GABRA6	ENTREZGENE
PANTHER	PTHR18945	UniProtKB/TrEMBL
Pfam	Neur_chan_LBD	UniProtKB/TrEMBL
	Neur_chan_memb	UniProtKB/TrEMBL
PRINTS	GABAARALPHA	UniProtKB/TrEMBL
	GABAARALPHA6	UniProtKB/TrEMBL
	GABAARECEPTR	UniProtKB/TrEMBL
	NRIONCHANNEL	UniProtKB/TrEMBL
PROSITE	NEUROTR_ION_CHANNEL	UniProtKB/TrEMBL
Superfamily-SCOP	SSF63712	UniProtKB/TrEMBL
	SSF90112	UniProtKB/TrEMBL
UniProt	A0A8C0JJC0	ENTREZGENE
	A0A8C0PW20	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Q209_CANLF	UniProtKB/TrEMBL
	A0A8C0RKF4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MFI4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MGK5_CANLF	UniProtKB/TrEMBL
	A0A8P0NYW3_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:51895	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-05-11	GABRA6	gamma-aminobutyric acid type A receptor subunit alpha6	GABRA6	gamma-aminobutyric acid type A receptor alpha6 subunit	Symbol and/or name change	19259463	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD