ARX (aristaless related homeobox) - Rat Genome Database

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Gene: ARX (aristaless related homeobox) Canis lupus familiaris
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Symbol: ARX
Name: aristaless related homeobox
RGD ID: 12430458
Description: ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); INVOLVED IN neuron development (ortholog); ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); Aicardi syndrome (ortholog); autistic disorder (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: homeobox protein ARX
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X20,545,346 - 20,556,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX20,545,346 - 20,556,206 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X20,498,344 - 20,511,419 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX20,499,238 - 20,510,100 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X20,538,249 - 20,549,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X20,571,748 - 20,582,617 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X20,628,835 - 20,639,715 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X20,545,346 - 20,556,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX20,545,346 - 20,556,206 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X20,498,344 - 20,511,419 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX20,499,238 - 20,510,100 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X20,538,249 - 20,549,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X20,571,748 - 20,582,617 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X20,628,835 - 20,639,715 (-)NCBIUU_Cfam_GSD_1.0
ARX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X25,003,694 - 25,015,965 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX25,003,694 - 25,016,420 (-)EnsemblGRCh38hg38GRCh38
GRCh37X25,021,811 - 25,034,082 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X24,932,213 - 24,943,775 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X24,781,948 - 24,793,511NCBI
CeleraX29,145,744 - 29,157,998 (-)NCBICelera
Cytogenetic MapXp21.3NCBI
HuRefX22,763,568 - 22,793,924 (-)NCBIHuRef
CHM1_1X25,053,346 - 25,065,599 (-)NCBICHM1_1
T2T-CHM13v2.0X24,587,932 - 24,600,202 (-)NCBIT2T-CHM13v2.0
Arx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X92,330,113 - 92,341,963 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX92,330,051 - 92,341,963 (+)EnsemblGRCm39 Ensembl
GRCm38X93,286,507 - 93,298,357 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX93,286,445 - 93,298,357 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X90,531,985 - 90,543,696 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X89,539,365 - 89,551,076 (+)NCBIMGSCv36mm8
CeleraX80,208,596 - 80,220,179 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX41.05NCBI
Arx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X62,010,097 - 62,022,009 (+)NCBIGRCr8
mRatBN7.2X58,016,233 - 58,028,149 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX58,016,233 - 58,028,142 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX59,442,698 - 59,454,605 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X62,943,813 - 62,955,718 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X60,501,842 - 60,513,757 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X62,363,757 - 62,376,139 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX62,363,757 - 62,376,143 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X62,957,562 - 62,969,944 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X80,631,375 - 80,643,989 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX58,455,664 - 58,467,636 (+)NCBICelera
Cytogenetic MapXq22NCBI
Arx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555095,326,145 - 5,338,250 (-)NCBIChiLan1.0ChiLan1.0
ARX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X26,800,416 - 26,814,128 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X26,803,792 - 26,817,510 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X17,598,858 - 17,612,544 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X24,965,203 - 24,977,939 (-)NCBIpanpan1.1PanPan1.1panPan2
Arx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X13,532,367 - 13,551,810 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936836295,664 - 306,756 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936836295,090 - 306,756 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX21,067,621 - 21,079,723 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X21,067,631 - 21,079,850 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X22,463,824 - 22,474,788 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X23,499,791 - 23,518,333 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX23,500,454 - 23,511,524 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605625,363,945 - 25,376,208 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248971,279,138 - 1,303,210 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARX
124 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 22 17 11 3 5 3 6 28 20 12 14 8

Sequence


Ensembl Acc Id: ENSCAFT00000021479   ⟹   ENSCAFP00000019946
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX20,545,346 - 20,556,206 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000048909   ⟹   ENSCAFP00000037383
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 EnsemblX20,545,346 - 20,556,206 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845054711   ⟹   ENSCAFP00845043030
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX20,499,238 - 20,510,100 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845054715   ⟹   ENSCAFP00845043034
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX20,499,238 - 20,510,100 (-)Ensembl
RefSeq Acc Id: NM_001114666   ⟹   NP_001108138
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X20,545,346 - 20,556,206 (-)NCBI
ROS_Cfam_1.0X20,499,238 - 20,510,100 (-)NCBI
UMICH_Zoey_3.1X20,538,249 - 20,549,126 (-)NCBI
UNSW_CanFamBas_1.0X20,571,748 - 20,582,617 (-)NCBI
UU_Cfam_GSD_1.0X20,628,835 - 20,639,715 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038448892   ⟹   XP_038304820
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X20,498,344 - 20,511,419 (-)NCBI
RefSeq Acc Id: NP_001108138   ⟸   NM_001114666
- UniProtKB: A0A8I3Q5H7 (UniProtKB/TrEMBL),   A0A8C0RTG2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000019946   ⟸   ENSCAFT00000021479
Ensembl Acc Id: ENSCAFP00000037383   ⟸   ENSCAFT00000048909
RefSeq Acc Id: XP_038304820   ⟸   XM_038448892
- Peptide Label: isoform X1
Ensembl Acc Id: ENSCAFP00845043030   ⟸   ENSCAFT00845054711
Ensembl Acc Id: ENSCAFP00845043034   ⟸   ENSCAFT00845054715
Protein Domains
Homeobox   OAR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013545 Ensembl
  ENSCAFG00030025366 UniProtKB/TrEMBL
  ENSCAFG00040010948 UniProtKB/TrEMBL
  ENSCAFG00845030780 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030046847.1 UniProtKB/TrEMBL
  ENSCAFT00030046876.1 UniProtKB/TrEMBL
  ENSCAFT00040020319.1 UniProtKB/TrEMBL
  ENSCAFT00040020373.1 UniProtKB/TrEMBL
  ENSCAFT00845054711 ENTREZGENE
  ENSCAFT00845054711.1 UniProtKB/TrEMBL
  ENSCAFT00845054715 ENTREZGENE
  ENSCAFT00845054715.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  OAR_dom UniProtKB/TrEMBL
  Paired_Homeobox_TFs UniProtKB/TrEMBL
NCBI Gene ARX ENTREZGENE
PANTHER ARISTALESS-RELATED HOMEOBOX PROTEIN-RELATED UniProtKB/TrEMBL
  HOMEOBOX PROTEIN ARISTALESS UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
  OAR UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  OAR UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8C0PJX9_CANLF UniProtKB/TrEMBL
  A0A8C0RTG2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0YV75_CANLF UniProtKB/TrEMBL
  A0A8C0YVE1_CANLF UniProtKB/TrEMBL
  A0A8I3Q5B9_CANLF UniProtKB/TrEMBL
  A0A8I3Q5H7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38151 ENTREZGENE