SIVA1 (SIVA1 apoptosis inducing factor) - Rat Genome Database

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Gene: SIVA1 (SIVA1 apoptosis inducing factor) Canis lupus familiaris
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Symbol: SIVA1
Name: SIVA1 apoptosis inducing factor
RGD ID: 12429229
Description: ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN activation-induced cell death of T cells (ortholog); intrinsic apoptotic signaling pathway (ortholog); negative regulation of NF-kappaB transcription factor activity (ortholog); ASSOCIATED WITH Coxsackievirus Infections (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: apoptosis regulatory protein Siva
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,309,400 - 72,313,726 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl872,309,447 - 72,313,640 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha871,815,163 - 71,819,494 (+)NCBI
ROS_Cfam_1.0872,584,386 - 72,588,709 (+)NCBI
UMICH_Zoey_3.1872,267,010 - 72,271,332 (+)NCBI
UNSW_CanFamBas_1.0872,310,264 - 72,314,586 (+)NCBI
UU_Cfam_GSD_1.0872,709,843 - 72,714,165 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
SIVA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,309,400 - 72,313,726 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl872,309,447 - 72,313,640 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha871,815,163 - 71,819,494 (+)NCBI
ROS_Cfam_1.0872,584,386 - 72,588,709 (+)NCBI
UMICH_Zoey_3.1872,267,010 - 72,271,332 (+)NCBI
UNSW_CanFamBas_1.0872,310,264 - 72,314,586 (+)NCBI
UU_Cfam_GSD_1.0872,709,843 - 72,714,165 (+)NCBI
SIVA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl14104,753,147 - 104,768,494 (+)EnsemblGRCh38hg38GRCh38
GRCh3814104,752,420 - 104,759,659 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3714105,219,484 - 105,225,991 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614104,290,515 - 104,297,041 (+)NCBINCBI36hg18NCBI36
Celera1485,274,542 - 85,281,070 (+)NCBI
Cytogenetic Map14q32.33NCBI
HuRef1485,416,458 - 85,422,986 (+)NCBIHuRef
CHM1_114105,157,086 - 105,163,614 (+)NCBICHM1_1
Siva1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912112,611,262 - 112,615,586 (+)NCBIGRCm39mm39
GRCm39 Ensembl12112,611,113 - 112,615,583 (+)Ensembl
GRCm3812112,644,828 - 112,649,152 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12112,644,679 - 112,649,149 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712113,883,039 - 113,887,363 (+)NCBIGRCm37mm9NCBIm37
MGSCv3612113,092,716 - 113,096,953 (+)NCBImm8
Celera12113,858,455 - 113,862,779 (+)NCBICelera
Cytogenetic Map12F1NCBI
Siva1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26131,705,312 - 131,709,697 (+)NCBI
Rnor_6.0 Ensembl6137,210,052 - 137,214,388 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06137,209,999 - 137,214,379 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06146,216,931 - 146,221,556 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46137,631,408 - 137,635,724 (+)NCBIRGSC3.4rn4RGSC3.4
Celera6129,253,021 - 129,257,273 (+)NCBICelera
Cytogenetic Map6q32NCBI
Siva1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555383,197,983 - 3,202,782 (+)NCBIChiLan1.0ChiLan1.0
SIVA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.114105,196,118 - 105,202,678 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl14105,196,118 - 105,202,678 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01485,404,148 - 85,408,254 (+)NCBIMhudiblu_PPA_v0panPan3
Siva1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086401,812,507 - 1,821,101 (-)NCBI
SpeTri2.0NW_004936621641,456 - 650,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIVA1
(Sus scrofa - pig)
No map positions available.
SIVA1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12482,689,233 - 82,695,073 (+)NCBI
ChlSab1.1 Ensembl2482,689,254 - 82,695,146 (+)Ensembl
Vero_WHO_p1.0NW_02366605370,110,198 - 70,116,322 (+)NCBI
Siva1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624734530,711 - 535,281 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000059790   ⟹   ENSCAFP00000059867
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl872,309,447 - 72,313,640 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000083896   ⟹   ENSCAFP00000055139
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl872,309,447 - 72,313,640 (+)Ensembl
RefSeq Acc Id: XM_038484378   ⟹   XP_038340306
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1872,267,010 - 72,271,332 (+)NCBI
RefSeq Acc Id: XM_038545913   ⟹   XP_038401841
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0872,709,843 - 72,714,165 (+)NCBI
RefSeq Acc Id: XM_038609976   ⟹   XP_038465904
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0872,310,264 - 72,314,586 (+)NCBI
RefSeq Acc Id: XM_038674817   ⟹   XP_038530745
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0872,584,386 - 72,588,709 (+)NCBI
RefSeq Acc Id: XM_850420   ⟹   XP_855513
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1872,309,400 - 72,313,726 (+)NCBI
Dog10K_Boxer_Tasha871,815,163 - 71,819,494 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038340306 (Get FASTA)   NCBI Sequence Viewer  
  XP_038401841 (Get FASTA)   NCBI Sequence Viewer  
  XP_038465904 (Get FASTA)   NCBI Sequence Viewer  
  XP_038530745 (Get FASTA)   NCBI Sequence Viewer  
  XP_855513 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_855513   ⟸   XM_850420
- Sequence:
RefSeq Acc Id: ENSCAFP00000059867   ⟸   ENSCAFT00000059790
RefSeq Acc Id: ENSCAFP00000055139   ⟸   ENSCAFT00000083896
RefSeq Acc Id: XP_038340306   ⟸   XM_038484378
RefSeq Acc Id: XP_038465904   ⟸   XM_038609976
RefSeq Acc Id: XP_038530745   ⟸   XM_038674817
RefSeq Acc Id: XP_038401841   ⟸   XM_038545913


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000047800 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000055139 UniProtKB/TrEMBL
  ENSCAFP00000059867 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000059790 UniProtKB/TrEMBL
  ENSCAFT00000083896 UniProtKB/TrEMBL
InterPro Siva UniProtKB/TrEMBL
KEGG Report cfa:612693 UniProtKB/TrEMBL
NCBI Gene SIVA1 ENTREZGENE
PANTHER PTHR14365 UniProtKB/TrEMBL
Pfam Siva UniProtKB/TrEMBL
PIRSF Siva_cd27_bd UniProtKB/TrEMBL
UniProt A0A5F4CLJ1_CANLF UniProtKB/TrEMBL
  A0A5F4D2A5_CANLF UniProtKB/TrEMBL