FAM32A (family with sequence similarity 32 member A) - Rat Genome Database

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Gene: FAM32A (family with sequence similarity 32 member A) Canis lupus familiaris
Analyze
Symbol: FAM32A
Name: family with sequence similarity 32 member A
RGD ID: 12427491
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: protein FAM32A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,292,497 - 46,297,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl348,154,756 - 8,155,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,292,497 - 46,298,004 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,207,010 - 46,212,504 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,780,949 - 46,786,444 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2046,780,949 - 46,786,457 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12046,015,591 - 46,021,085 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,426,052 - 46,431,544 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,703,408 - 46,708,902 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (IEA)
nucleoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:16723480   PMID:30032202  


Genomics

Comparative Map Data
FAM32A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,292,497 - 46,297,991 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl348,154,756 - 8,155,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,292,497 - 46,298,004 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,207,010 - 46,212,504 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,780,949 - 46,786,444 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2046,780,949 - 46,786,457 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12046,015,591 - 46,021,085 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,426,052 - 46,431,544 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,703,408 - 46,708,902 (-)NCBIUU_Cfam_GSD_1.0
FAM32A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381916,185,410 - 16,192,046 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1916,185,380 - 16,192,046 (+)EnsemblGRCh38hg38GRCh38
GRCh371916,296,221 - 16,302,857 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361916,157,235 - 16,163,857 (+)NCBINCBI36Build 36hg18NCBI36
Build 341916,157,234 - 16,163,855NCBI
Celera1916,198,233 - 16,204,860 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1915,867,006 - 15,873,595 (+)NCBIHuRef
CHM1_11916,295,773 - 16,302,420 (+)NCBICHM1_1
T2T-CHM13v2.01916,319,478 - 16,326,117 (+)NCBIT2T-CHM13v2.0
Fam32a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,973,589 - 72,978,878 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,973,574 - 72,978,262 (+)EnsemblGRCm39 Ensembl
GRCm38872,219,745 - 72,225,034 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl872,219,730 - 72,224,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv37874,743,629 - 74,747,674 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36875,148,719 - 75,152,764 (+)NCBIMGSCv36mm8
Celera876,576,082 - 76,580,126 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.9NCBI
Fam32a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81617,637,078 - 17,641,448 (-)NCBIGRCr8
mRatBN7.21617,603,054 - 17,607,376 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1617,603,946 - 17,607,398 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1617,669,146 - 17,673,471 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01618,801,181 - 18,805,504 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01617,722,071 - 17,726,396 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,304,522 - 19,308,842 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,304,529 - 19,308,842 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,164,833 - 19,169,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,025,468 - 18,029,788 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1617,820,419 - 17,824,739 (-)NCBICelera
Cytogenetic Map16p14NCBI
Fam32a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555241,366,531 - 1,370,400 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555241,366,503 - 1,370,404 (-)NCBIChiLan1.0ChiLan1.0
FAM32A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22021,054,686 - 21,061,450 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11920,060,537 - 20,067,239 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01915,672,703 - 15,679,404 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11916,653,456 - 16,660,106 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1916,653,456 - 16,660,106 (+)Ensemblpanpan1.1panPan2
Fam32a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,801,264 - 204,804,960 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365964,351,183 - 4,354,114 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365964,350,403 - 4,354,061 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM32A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl261,388,639 - 61,394,287 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1261,388,628 - 61,394,251 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,020,921 - 61,026,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM32A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,691,042 - 14,697,657 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl614,691,042 - 14,697,665 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660744,794,926 - 4,801,573 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam32a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,069,576 - 1,072,888 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,069,576 - 1,072,969 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM32A
53 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 1 1 1 1
Low 1 3 6 4 3 4 2 4 2 2
Below cutoff 4 2 13 2 3 2 4 2 10 4 7 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000003279   ⟹   ENSCAFP00000040756
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl348,154,756 - 8,155,645 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074914   ⟹   ENSCAFP00000060048
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2046,292,497 - 46,297,991 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000075873   ⟹   ENSCAFP00000054454
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2046,293,649 - 46,298,004 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053821   ⟹   ENSCAFP00845042301
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2046,780,949 - 46,786,444 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053833   ⟹   ENSCAFP00845042310
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2046,780,975 - 46,786,448 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053843   ⟹   ENSCAFP00845042317
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2046,782,101 - 46,786,457 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845053848   ⟹   ENSCAFP00845042322
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2046,784,114 - 46,786,457 (-)Ensembl
RefSeq Acc Id: NM_001287071   ⟹   NP_001274000
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12046,292,497 - 46,297,991 (-)NCBI
Dog10K_Boxer_Tasha2046,207,010 - 46,212,504 (-)NCBI
ROS_Cfam_1.02046,780,949 - 46,786,444 (-)NCBI
UMICH_Zoey_3.12046,015,591 - 46,021,085 (-)NCBI
UNSW_CanFamBas_1.02046,426,052 - 46,431,544 (-)NCBI
UU_Cfam_GSD_1.02046,703,408 - 46,708,902 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001287072   ⟹   NP_001274001
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12046,293,131 - 46,297,991 (-)NCBI
Dog10K_Boxer_Tasha2046,207,644 - 46,212,504 (-)NCBI
ROS_Cfam_1.02046,781,583 - 46,786,444 (-)NCBI
UMICH_Zoey_3.12046,016,225 - 46,021,085 (-)NCBI
UNSW_CanFamBas_1.02046,426,685 - 46,431,544 (-)NCBI
UU_Cfam_GSD_1.02046,704,042 - 46,708,902 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001274000   ⟸   NM_001287071
- UniProtKB: A0A8C0RR58 (UniProtKB/TrEMBL),   A0A8I3QXR1 (UniProtKB/TrEMBL),   A0A8I3Q458 (UniProtKB/TrEMBL),   A0A8P0PFW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274001   ⟸   NM_001287072
- UniProtKB: A0A8C0RR58 (UniProtKB/TrEMBL),   A0A8I3QXR1 (UniProtKB/TrEMBL),   A0A8I3Q458 (UniProtKB/TrEMBL),   A0A8P0PFW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000060048   ⟸   ENSCAFT00000074914
RefSeq Acc Id: ENSCAFP00000040756   ⟸   ENSCAFT00000003279
RefSeq Acc Id: ENSCAFP00000054454   ⟸   ENSCAFT00000075873
RefSeq Acc Id: ENSCAFP00845042310   ⟸   ENSCAFT00845053833
RefSeq Acc Id: ENSCAFP00845042322   ⟸   ENSCAFT00845053848
RefSeq Acc Id: ENSCAFP00845042301   ⟸   ENSCAFT00845053821
RefSeq Acc Id: ENSCAFP00845042317   ⟸   ENSCAFT00845053843


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002070 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00000048510 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030021973 UniProtKB/TrEMBL
  ENSCAFG00030022364 UniProtKB/TrEMBL
  ENSCAFG00040018498 UniProtKB/TrEMBL
  ENSCAFG00040024158 UniProtKB/TrEMBL
  ENSCAFG00845030334 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000003279.4 UniProtKB/TrEMBL
  ENSCAFT00000074914.2 UniProtKB/TrEMBL
  ENSCAFT00000075873.2 UniProtKB/TrEMBL
  ENSCAFT00000108331.1 UniProtKB/TrEMBL
  ENSCAFT00000108785.1 UniProtKB/TrEMBL
  ENSCAFT00030040347.1 UniProtKB/TrEMBL
  ENSCAFT00030040364.1 UniProtKB/TrEMBL
  ENSCAFT00030041087.1 UniProtKB/TrEMBL
  ENSCAFT00040034245.1 UniProtKB/TrEMBL
  ENSCAFT00040034295.1 UniProtKB/TrEMBL
  ENSCAFT00040045016.1 UniProtKB/TrEMBL
  ENSCAFT00845053821 ENTREZGENE
  ENSCAFT00845053821.1 UniProtKB/TrEMBL
  ENSCAFT00845053833 ENTREZGENE
  ENSCAFT00845053833.1 UniProtKB/TrEMBL
  ENSCAFT00845053843.1 UniProtKB/TrEMBL
  ENSCAFT00845053848.1 UniProtKB/TrEMBL
InterPro FAM32A UniProtKB/TrEMBL
KEGG Report cfa:480644 UniProtKB/TrEMBL
NCBI Gene FAM32A ENTREZGENE
PANTHER PROTEIN FAM32A UniProtKB/TrEMBL
  PTHR13282 UniProtKB/TrEMBL
Pfam DUF1754 UniProtKB/TrEMBL
UniProt A0A8C0RR58 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T3S5_CANLF UniProtKB/TrEMBL
  A0A8C0TT75_CANLF UniProtKB/TrEMBL
  A0A8I3Q458 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q465_CANLF UniProtKB/TrEMBL
  A0A8I3QMZ7_CANLF UniProtKB/TrEMBL
  A0A8I3QXR1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PFW6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PSD7_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0SUM7 UniProtKB/TrEMBL
VGNC ID VGNC:40676 ENTREZGENE