CHL1 (cell adhesion molecule L1 like) - Rat Genome Database

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Gene: CHL1 (cell adhesion molecule L1 like) Canis lupus familiaris
Analyze
Symbol: CHL1
Name: cell adhesion molecule L1 like
RGD ID: 12426595
Description: ENCODES a protein that exhibits cell-cell adhesion mediator activity (inferred); protease binding (inferred); INVOLVED IN adult locomotory behavior (ortholog); axon guidance (ortholog); axon regeneration (ortholog); ASSOCIATED WITH autistic disorder (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN apical part of cell (inferred); axon (inferred); dendrite (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell adhesion molecule with homology to L1CAM (close homolog of L1); neural cell adhesion molecule L1-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12016,789,697 - 17,065,861 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2016,792,960 - 16,984,613 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2016,749,264 - 16,944,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02016,813,683 - 17,008,977 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12016,507,712 - 16,702,265 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02016,846,488 - 17,041,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02016,912,922 - 17,107,895 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CHL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12016,789,697 - 17,065,861 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2016,792,960 - 16,984,613 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2016,749,264 - 16,944,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02016,813,683 - 17,008,977 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12016,507,712 - 16,702,265 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02016,846,488 - 17,041,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02016,912,922 - 17,107,895 (-)NCBIUU_Cfam_GSD_1.0
CHL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383196,763 - 409,417 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3196,763 - 409,417 (+)EnsemblGRCh38hg38GRCh38
GRCh373238,446 - 451,100 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363213,650 - 426,098 (+)NCBINCBI36Build 36hg18NCBI36
Build 343213,649 - 426,098NCBI
Celera3184,048 - 396,327 (+)NCBICelera
Cytogenetic Map3p26.3NCBI
HuRef3183,830 - 396,668 (+)NCBIHuRef
CHM1_13181,916 - 401,107 (+)NCBICHM1_1
T2T-CHM13v2.03188,582 - 401,277 (+)NCBIT2T-CHM13v2.0
Chl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396103,487,372 - 103,709,999 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6103,487,547 - 103,727,172 (+)EnsemblGRCm39 Ensembl
GRCm386103,510,584 - 103,733,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6103,510,586 - 103,750,211 (+)EnsemblGRCm38mm10GRCm38
MGSCv376103,460,870 - 103,683,029 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366103,476,776 - 103,695,601 (+)NCBIMGSCv36mm8
Celera6105,381,168 - 105,594,453 (+)NCBICelera
Cytogenetic Map6E1NCBI
cM Map647.97NCBI
Chl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84137,847,648 - 138,062,077 (+)NCBIGRCr8
mRatBN7.24136,291,504 - 136,505,830 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4136,291,463 - 136,503,265 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0470,269,414 - 70,331,313 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl470,252,366 - 70,330,803 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04134,915,211 - 135,121,060 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4125,052,335 - 125,267,922 (+)NCBICelera
Cytogenetic Map4q41NCBI
Chl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542112,763,287 - 12,958,065 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542112,763,432 - 12,957,852 (-)NCBIChiLan1.0ChiLan1.0
CHL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22199,839 - 409,103 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13204,913 - 413,859 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03146,514 - 354,334 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13262,725 - 469,720 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3262,717 - 469,715 (+)Ensemblpanpan1.1panPan2
Chl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049427,516,539 - 7,592,385 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936577474,143 - 544,022 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936577471,766 - 547,769 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1356,804,555 - 57,034,181 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11356,804,309 - 57,034,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21362,802,031 - 62,985,993 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12236,299,841 - 36,512,292 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2236,300,474 - 36,512,417 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041130,224,602 - 130,441,764 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477310,262,714 - 10,342,392 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477310,142,515 - 10,342,280 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CHL1
4384 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 5 12
Low 5 4 16 6 6 6 1 10 6
Below cutoff 1 6 8

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022406444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038427128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_533760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000010134   ⟹   ENSCAFP00000009401
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2016,792,960 - 16,984,613 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000044854   ⟹   ENSCAFP00000037207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2016,792,960 - 16,984,613 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000047619   ⟹   ENSCAFP00000036613
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2016,792,960 - 16,984,613 (-)Ensembl
RefSeq Acc Id: XM_022406444   ⟹   XP_022262152
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12016,789,697 - 16,984,783 (-)NCBI
Dog10K_Boxer_Tasha2016,749,264 - 16,944,183 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038427120   ⟹   XP_038283048
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02016,813,683 - 17,008,977 (-)NCBI
RefSeq Acc Id: XM_038427121   ⟹   XP_038283049
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02016,813,683 - 17,007,945 (-)NCBI
RefSeq Acc Id: XM_038427122   ⟹   XP_038283050
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02016,813,683 - 17,008,977 (-)NCBI
RefSeq Acc Id: XM_038427123   ⟹   XP_038283051
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02016,813,683 - 17,008,977 (-)NCBI
RefSeq Acc Id: XM_038427124   ⟹   XP_038283052
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02016,813,683 - 17,007,945 (-)NCBI
RefSeq Acc Id: XM_038427125   ⟹   XP_038283053
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02016,813,683 - 17,008,977 (-)NCBI
RefSeq Acc Id: XM_038427126   ⟹   XP_038283054
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02016,813,683 - 17,007,945 (-)NCBI
RefSeq Acc Id: XM_038427127   ⟹   XP_038283055
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02016,813,683 - 17,008,977 (-)NCBI
RefSeq Acc Id: XM_038427128   ⟹   XP_038283056
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02016,813,683 - 17,008,977 (-)NCBI
RefSeq Acc Id: XM_038455481   ⟹   XP_038311409
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2016,749,264 - 16,943,142 (-)NCBI
RefSeq Acc Id: XM_038455482   ⟹   XP_038311410
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2016,749,264 - 16,944,183 (-)NCBI
RefSeq Acc Id: XM_038455483   ⟹   XP_038311411
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2016,749,264 - 16,943,142 (-)NCBI
RefSeq Acc Id: XM_038455484   ⟹   XP_038311412
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2016,749,264 - 16,944,183 (-)NCBI
RefSeq Acc Id: XM_038455485   ⟹   XP_038311413
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2016,749,264 - 16,943,142 (-)NCBI
RefSeq Acc Id: XM_038455486   ⟹   XP_038311414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2016,749,264 - 16,944,183 (-)NCBI
RefSeq Acc Id: XM_038455487   ⟹   XP_038311415
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2016,749,264 - 16,944,183 (-)NCBI
RefSeq Acc Id: XM_038502890   ⟹   XP_038358818
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12016,507,712 - 16,702,265 (-)NCBI
RefSeq Acc Id: XM_038565827   ⟹   XP_038421755
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02016,912,922 - 17,107,895 (-)NCBI
RefSeq Acc Id: XM_038565828   ⟹   XP_038421756
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02016,912,922 - 17,106,853 (-)NCBI
RefSeq Acc Id: XM_038565829   ⟹   XP_038421757
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02016,912,922 - 17,107,895 (-)NCBI
RefSeq Acc Id: XM_038629951   ⟹   XP_038485879
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02016,846,488 - 17,041,214 (-)NCBI
RefSeq Acc Id: XM_038629952   ⟹   XP_038485880
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02016,846,488 - 17,040,171 (-)NCBI
RefSeq Acc Id: XM_038629953   ⟹   XP_038485881
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02016,846,488 - 17,041,214 (-)NCBI
RefSeq Acc Id: XM_038629954   ⟹   XP_038485882
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02016,846,488 - 17,041,214 (-)NCBI
RefSeq Acc Id: XM_038629955   ⟹   XP_038485883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02016,846,488 - 17,040,171 (-)NCBI
RefSeq Acc Id: XM_038629956   ⟹   XP_038485884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02016,846,488 - 17,041,214 (-)NCBI
RefSeq Acc Id: XM_038629957   ⟹   XP_038485885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02016,846,488 - 17,040,171 (-)NCBI
RefSeq Acc Id: XM_038629958   ⟹   XP_038485886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02016,846,488 - 17,041,214 (-)NCBI
RefSeq Acc Id: XM_038629959   ⟹   XP_038485887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02016,846,488 - 17,041,213 (-)NCBI
RefSeq Acc Id: XM_533760   ⟹   XP_533760
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12016,789,697 - 16,984,783 (-)NCBI
Dog10K_Boxer_Tasha2016,749,264 - 16,944,183 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_022262152 (Get FASTA)   NCBI Sequence Viewer  
  XP_038283048 (Get FASTA)   NCBI Sequence Viewer  
  XP_038283049 (Get FASTA)   NCBI Sequence Viewer  
  XP_038283050 (Get FASTA)   NCBI Sequence Viewer  
  XP_038283051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038283052 (Get FASTA)   NCBI Sequence Viewer  
  XP_038283053 (Get FASTA)   NCBI Sequence Viewer  
  XP_038283054 (Get FASTA)   NCBI Sequence Viewer  
  XP_038283055 (Get FASTA)   NCBI Sequence Viewer  
  XP_038283056 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311409 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311410 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311411 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311412 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311413 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311414 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311415 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358818 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421755 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421756 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421757 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485879 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485880 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485881 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485882 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485883 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485884 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485885 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485886 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485887 (Get FASTA)   NCBI Sequence Viewer  
  XP_533760 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000009401.4
  ENSCAFP00000036613.2
  ENSCAFP00000037207.2
  ENSCAFP00000067157.1
  ENSCAFP00000068543.1
  ENSCAFP00030023581.1
  ENSCAFP00030023777.1
  ENSCAFP00030023952.1
  ENSCAFP00040010926.1
  ENSCAFP00040011007.1
  ENSCAFP00845008487
  ENSCAFP00845008487.1
  ENSCAFP00845008568.1
  ENSCAFP00845008649.1
  ENSCAFP00845008697
  ENSCAFP00845008697.1
  ENSCAFP00845008754
  ENSCAFP00845008754.1
Reference Protein Sequences
RefSeq Acc Id: XP_533760   ⟸   XM_533760
- Peptide Label: isoform X1
- UniProtKB: A0A8P0TJ18 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022262152   ⟸   XM_022406444
- Peptide Label: isoform X1
- UniProtKB: A0A8P0TJ18 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000037207   ⟸   ENSCAFT00000044854
RefSeq Acc Id: ENSCAFP00000009401   ⟸   ENSCAFT00000010134
RefSeq Acc Id: ENSCAFP00000036613   ⟸   ENSCAFT00000047619
RefSeq Acc Id: XP_038358818   ⟸   XM_038502890
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038485886   ⟸   XM_038629958
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038485879   ⟸   XM_038629951
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038485882   ⟸   XM_038629954
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038485881   ⟸   XM_038629953
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038485884   ⟸   XM_038629956
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038485887   ⟸   XM_038629959
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038485885   ⟸   XM_038629957
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038485880   ⟸   XM_038629952
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038485883   ⟸   XM_038629955
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038283055   ⟸   XM_038427127
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N9R6 (UniProtKB/TrEMBL),   A0A8I3NDT9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038283056   ⟸   XM_038427128
- Peptide Label: isoform X3
- UniProtKB: A0A8I3N0U7 (UniProtKB/TrEMBL),   A0A8C0NFI1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038283048   ⟸   XM_038427120
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MYX5 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038283051   ⟸   XM_038427123
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MYX5 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038283050   ⟸   XM_038427122
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MYX5 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038283053   ⟸   XM_038427125
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MYX5 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038283054   ⟸   XM_038427126
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MYX5 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038283049   ⟸   XM_038427121
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MYX5 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038283052   ⟸   XM_038427124
- Peptide Label: isoform X1
- UniProtKB: A0A8I3MYX5 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311414   ⟸   XM_038455486
- Peptide Label: isoform X2
- UniProtKB: A0A8C0KRY3 (UniProtKB/TrEMBL),   A0A8P0SRJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311415   ⟸   XM_038455487
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KN97 (UniProtKB/TrEMBL),   A0A8P0SS56 (UniProtKB/TrEMBL),   A0A8C0NFI1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311410   ⟸   XM_038455482
- Peptide Label: isoform X1
- UniProtKB: A0A8P0TJ18 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311412   ⟸   XM_038455484
- Peptide Label: isoform X1
- UniProtKB: A0A8P0TJ18 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311413   ⟸   XM_038455485
- Peptide Label: isoform X1
- UniProtKB: A0A8P0TJ18 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311409   ⟸   XM_038455481
- Peptide Label: isoform X1
- UniProtKB: A0A8P0TJ18 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311411   ⟸   XM_038455483
- Peptide Label: isoform X1
- UniProtKB: A0A8P0TJ18 (UniProtKB/TrEMBL),   A0A8C0NJW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421755   ⟸   XM_038565827
- Peptide Label: isoform X4
- UniProtKB: A0A8C0QAH3 (UniProtKB/TrEMBL),   A0A8C0QBN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421757   ⟸   XM_038565829
- Peptide Label: isoform X4
- UniProtKB: A0A8C0QAH3 (UniProtKB/TrEMBL),   A0A8C0QBN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421756   ⟸   XM_038565828
- Peptide Label: isoform X4
- UniProtKB: A0A8C0QAH3 (UniProtKB/TrEMBL),   A0A8C0QBN1 (UniProtKB/TrEMBL)
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006248 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014597 UniProtKB/TrEMBL
  ENSCAFG00040006343 UniProtKB/TrEMBL
  ENSCAFG00845006097 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010134.5 UniProtKB/TrEMBL
  ENSCAFT00000044854.4 UniProtKB/TrEMBL
  ENSCAFT00000047619.4 UniProtKB/TrEMBL
  ENSCAFT00000097306.1 UniProtKB/TrEMBL
  ENSCAFT00000103969.1 UniProtKB/TrEMBL
  ENSCAFT00030027017.1 UniProtKB/TrEMBL
  ENSCAFT00030027244.1 UniProtKB/TrEMBL
  ENSCAFT00030027454.1 UniProtKB/TrEMBL
  ENSCAFT00040012608.1 UniProtKB/TrEMBL
  ENSCAFT00040012694.1 UniProtKB/TrEMBL
  ENSCAFT00845010874 ENTREZGENE
  ENSCAFT00845010874.1 UniProtKB/TrEMBL
  ENSCAFT00845010977.1 UniProtKB/TrEMBL
  ENSCAFT00845011086.1 UniProtKB/TrEMBL
  ENSCAFT00845011153 ENTREZGENE
  ENSCAFT00845011153.1 UniProtKB/TrEMBL
  ENSCAFT00845011222 ENTREZGENE
  ENSCAFT00845011222.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/TrEMBL
  Neurofascin/L1/NrCAM_C UniProtKB/TrEMBL
NCBI Gene CHL1 ENTREZGENE
PANTHER NEURAL CELL ADHESION MOLECULE L1-LIKE PROTEIN ISOFORM X1 UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
Pfam Bravo_FIGEY UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  PF00047 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8C0KN97 ENTREZGENE
  A0A8C0KRY3 ENTREZGENE
  A0A8C0N9R6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NFI1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NJW6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QAH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QBN1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MYX5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N0U7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NDQ3_CANLF UniProtKB/TrEMBL
  A0A8I3NDT9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RT51_CANLF UniProtKB/TrEMBL
  A0A8P0N8W8_CANLF UniProtKB/TrEMBL
  A0A8P0SRJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SS56 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TJ18 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TKX0_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:39219 ENTREZGENE