SLC7A2 (solute carrier family 7 member 2) - Rat Genome Database

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Gene: SLC7A2 (solute carrier family 7 member 2) Canis lupus familiaris
Analyze
Symbol: SLC7A2
Name: solute carrier family 7 member 2
RGD ID: 12425991
Description: ENCODES a protein that exhibits high-affinity L-arginine transmembrane transporter activity (ortholog); high-affinity L-ornithine transmembrane transporter activity (ortholog); high-affinity lysine transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); L-alpha-amino acid transmembrane transport (ortholog); L-amino acid transport (ortholog); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; glutaric aciduria type I pathway; hyperlysinemia pathway; FOUND IN cell junction (inferred); integral component of membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cationic amino acid transporter 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11640,855,270 - 40,879,956 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1640,745,458 - 40,875,106 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1641,312,676 - 41,387,063 (+)NCBI
ROS_Cfam_1.01642,867,670 - 42,935,808 (+)NCBI
ROS_Cfam_1.0 Ensembl1642,867,675 - 42,935,804 (+)Ensembl
UMICH_Zoey_3.11640,961,049 - 41,029,086 (+)NCBI
UNSW_CanFamBas_1.01641,504,575 - 41,572,831 (+)NCBI
UU_Cfam_GSD_1.01641,699,102 - 41,767,417 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SLC7A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11640,855,270 - 40,879,956 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1640,745,458 - 40,875,106 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1641,312,676 - 41,387,063 (+)NCBI
ROS_Cfam_1.01642,867,670 - 42,935,808 (+)NCBI
ROS_Cfam_1.0 Ensembl1642,867,675 - 42,935,804 (+)Ensembl
UMICH_Zoey_3.11640,961,049 - 41,029,086 (+)NCBI
UNSW_CanFamBas_1.01641,504,575 - 41,572,831 (+)NCBI
UU_Cfam_GSD_1.01641,699,102 - 41,767,417 (+)NCBI
SLC7A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl817,497,088 - 17,570,573 (+)EnsemblGRCh38hg38GRCh38
GRCh38817,494,349 - 17,570,566 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37817,354,597 - 17,428,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36817,440,665 - 17,472,352 (+)NCBINCBI36hg18NCBI36
Build 34817,440,684 - 17,472,296NCBI
Celera816,320,372 - 16,393,730 (+)NCBI
Cytogenetic Map8p22NCBI
HuRef815,899,173 - 15,972,649 (+)NCBIHuRef
CHM1_1817,556,088 - 17,629,545 (+)NCBICHM1_1
Slc7a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39841,315,404 - 41,375,107 (+)NCBIGRCm39mm39
GRCm39 Ensembl841,315,433 - 41,375,345 (+)Ensembl
GRCm38840,862,341 - 40,922,070 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl840,862,396 - 40,922,308 (+)EnsemblGRCm38mm10GRCm38
MGSCv37841,947,721 - 42,007,424 (+)NCBIGRCm37mm9NCBIm37
MGSCv36842,361,229 - 42,421,125 (+)NCBImm8
Celera843,496,255 - 43,555,499 (+)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
Slc7a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21651,417,478 - 51,470,784 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1651,417,493 - 51,470,784 (-)Ensembl
Rnor_6.01654,459,409 - 54,513,349 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1654,460,067 - 54,513,349 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01654,171,102 - 54,224,384 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41654,752,119 - 54,805,406 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1649,310,502 - 49,363,790 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
Slc7a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555522,117,755 - 2,141,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555522,117,972 - 2,141,144 (-)NCBIChiLan1.0ChiLan1.0
SLC7A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1813,671,571 - 13,741,007 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl813,671,571 - 13,735,645 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0816,723,227 - 16,788,745 (+)NCBIMhudiblu_PPA_v0panPan3
Slc7a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494338,425,216 - 38,494,926 (-)NCBI
SpeTri2.0NW_004936614111,625 - 184,571 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC7A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl175,122,265 - 5,271,849 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1175,191,973 - 5,271,849 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2175,704,846 - 5,725,732 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC7A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1815,591,795 - 15,665,837 (+)NCBIChlSab1.1chlSab2
ChlSab1.1815,591,795 - 15,665,837 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl815,638,113 - 15,660,487 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605226,611,997 - 26,686,779 (-)NCBIVero_WHO_p1.0
Slc7a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476921,678,084 - 21,757,168 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 10 6 1 6 6 2 5
Low 2 5 12 5 6 10 8 10 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005629941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022404140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038497793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038560265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038624312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038624313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038624314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038690066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000011153   ⟹   ENSCAFP00000010331
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1640,826,761 - 40,875,106 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078705   ⟹   ENSCAFP00000044402
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1640,745,458 - 40,875,106 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000085703   ⟹   ENSCAFP00000061408
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1640,745,458 - 40,875,106 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845026456   ⟹   ENSCAFP00845020849
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1642,867,675 - 42,932,166 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845026493   ⟹   ENSCAFP00845020880
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1642,867,699 - 42,932,166 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845026535   ⟹   ENSCAFP00845020917
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1642,911,114 - 42,935,804 (+)Ensembl
RefSeq Acc Id: XM_038452504   ⟹   XP_038308432
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1641,312,676 - 41,387,063 (+)NCBI
RefSeq Acc Id: XM_038452505   ⟹   XP_038308433
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1641,313,210 - 41,381,995 (+)NCBI
RefSeq Acc Id: XM_038452506   ⟹   XP_038308434
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1641,312,676 - 41,387,063 (+)NCBI
RefSeq Acc Id: XM_038497791   ⟹   XP_038353719
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11640,961,049 - 41,029,086 (+)NCBI
RefSeq Acc Id: XM_038497792   ⟹   XP_038353720
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11640,961,569 - 41,024,018 (+)NCBI
RefSeq Acc Id: XM_038497793   ⟹   XP_038353721
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11640,961,049 - 41,029,086 (+)NCBI
RefSeq Acc Id: XM_038560263   ⟹   XP_038416191
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01641,699,102 - 41,767,417 (+)NCBI
RefSeq Acc Id: XM_038560264   ⟹   XP_038416192
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01641,699,635 - 41,762,348 (+)NCBI
RefSeq Acc Id: XM_038560265   ⟹   XP_038416193
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01641,699,102 - 41,767,417 (+)NCBI
RefSeq Acc Id: XM_038624312   ⟹   XP_038480240
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01641,504,575 - 41,572,831 (+)NCBI
RefSeq Acc Id: XM_038624313   ⟹   XP_038480241
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01641,505,103 - 41,567,759 (+)NCBI
RefSeq Acc Id: XM_038624314   ⟹   XP_038480242
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01641,504,575 - 41,572,831 (+)NCBI
RefSeq Acc Id: XM_038690064   ⟹   XP_038545992
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01642,867,670 - 42,935,808 (+)NCBI
RefSeq Acc Id: XM_038690065   ⟹   XP_038545993
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01642,868,201 - 42,930,736 (+)NCBI
RefSeq Acc Id: XM_038690066   ⟹   XP_038545994
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01642,867,670 - 42,935,808 (+)NCBI
Reference Sequences
RefSeq Acc Id: ENSCAFP00000044402   ⟸   ENSCAFT00000078705
RefSeq Acc Id: ENSCAFP00000010331   ⟸   ENSCAFT00000011153
RefSeq Acc Id: ENSCAFP00000061408   ⟸   ENSCAFT00000085703
RefSeq Acc Id: XP_038353719   ⟸   XM_038497791
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038353721   ⟸   XM_038497793
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038353720   ⟸   XM_038497792
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038480240   ⟸   XM_038624312
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038480242   ⟸   XM_038624314
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038480241   ⟸   XM_038624313
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038545992   ⟸   XM_038690064
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038545994   ⟸   XM_038690066
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038545993   ⟸   XM_038690065
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038308432   ⟸   XM_038452504
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038308434   ⟸   XM_038452506
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038308433   ⟸   XM_038452505
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038416191   ⟸   XM_038560263
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038416193   ⟸   XM_038560265
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038416192   ⟸   XM_038560264
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCAFP00845020917   ⟸   ENSCAFT00845026535
RefSeq Acc Id: ENSCAFP00845020880   ⟸   ENSCAFT00845026493
RefSeq Acc Id: ENSCAFP00845020849   ⟸   ENSCAFT00845026456
Protein Domains
AA_permease_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006944 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845014791 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000010331 UniProtKB/TrEMBL
  ENSCAFP00000044402 UniProtKB/TrEMBL
  ENSCAFP00000061408 UniProtKB/TrEMBL
  ENSCAFP00845020849 ENTREZGENE
  ENSCAFP00845020880 ENTREZGENE
Ensembl Transcript ENSCAFT00000011153 UniProtKB/TrEMBL
  ENSCAFT00000078705 UniProtKB/TrEMBL
  ENSCAFT00000085703 UniProtKB/TrEMBL
  ENSCAFT00845026456 ENTREZGENE
  ENSCAFT00845026493 ENTREZGENE
InterPro AA/rel_permease1 UniProtKB/TrEMBL
  Cat_AA_permease UniProtKB/TrEMBL
  CAT_C UniProtKB/TrEMBL
KEGG Report cfa:475614 UniProtKB/TrEMBL
NCBI Gene SLC7A2 ENTREZGENE
Pfam AA_permease_2 UniProtKB/TrEMBL
  AA_permease_C UniProtKB/TrEMBL
TIGRFAMs 2A0303 UniProtKB/TrEMBL
UniProt A0A5F4BU20_CANLF UniProtKB/TrEMBL
  A0A5F4D4M0_CANLF UniProtKB/TrEMBL
  E2RI01_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:46474 ENTREZGENE